Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015958.1

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

16470 .. 17887

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015958.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggaagctcaagtaatccgaattctggagatgagattgattggaatgttatcagtgctgaaattggatttacatgtgggtttggaattgccgtctggtcacttttgttttgcaagagatggaggaaatggtattacagagctatgtttaacatcctgttcaagatattgcctcagctggaacacagattcgattgctcatatgaagaaagagatagatgctattcgttctaaagacgtctctcaaggtggattgactcaagggcaacaaactcagatctcgcgaaatgaacaaagaacagaacagattctggaagagcttgaaaatttggaagagacgctgaatgagagtacgtattcaagaaagtttagatgcacgtgttgggaagctatctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

132

Amino Acids

15.0

Weight (kDa)

5.2

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AccII	CGCG	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	21, 325
AcvI	CACGTG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	25
AflIII	ACRYGT	2 cut(s)	73, 377
AgsI	TTSAA	3 cut(s)	162, 323, 360
AluBI	AGCT	5 cut(s)	8, 142, 177, 319, 389
AluI	AGCT	5 cut(s)	8, 142, 177, 319, 389
Alw26I	GTCTC	2 cut(s)	244, 329
AlwNI	CAGNNNCTG	1 cut(s)	310
ApoI	RAATTY	2 cut(s)	21, 325
Asp700I	GAANNNNTTC	1 cut(s)	306
BbrPI	CACGTG	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	244, 329
BglII	AGATCT	1 cut(s)	276
BmsI	GCATC	2 cut(s)	208, 362
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	228, 243
BsaAI	YACGTR	2 cut(s)	354, 378
BsaHI	GRCGYC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	187, 287
Bsh1236I	CGCG	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	244, 329
BsmBI	CGTCTC	2 cut(s)	244, 329
Bsp143I	GATC	1 cut(s)	276
Bsp68I	TCGCGA	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	186, 286
BspFNI	CGCG	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	309
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	237
Bst6I	CTCTTC	2 cut(s)	309, 327
BstACI	GRCGYC	1 cut(s)	237
BstBAI	YACGTR	2 cut(s)	354, 378
BstDEI	CTNAG	2 cut(s)	173, 273
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	2 cut(s)	244, 329
BstMBI	GATC	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	77
BstSNI	TACGTA	1 cut(s)	354
BstUI	CGCG	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	60
BtuMI	TCGCGA	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	310
CciI	TCATGA	1 cut(s)	395
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	2 cut(s)	74, 396
CviJI	RGCY	5 cut(s)	8, 142, 177, 319, 389
CviKI_1	RGCY	5 cut(s)	8, 142, 177, 319, 389
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	173, 273
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	309, 327
EarI	CTCTTC	2 cut(s)	309, 327
Eco105I	TACGTA	1 cut(s)	354
Eco72I	CACGTG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	21
Esp3I	CGTCTC	2 cut(s)	244, 329
FaeI	CATG	2 cut(s)	77, 399
FaiI	YATR	5 cut(s)	75, 145, 201, 203, 397
FatI	CATG	2 cut(s)	73, 395
FauNDI	CATATG	1 cut(s)	201
FokI	GGATG	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	77, 399
HinfI	GANTC	3 cut(s)	188, 256, 307
Hpy188I	TCNGA	2 cut(s)	20, 276
Hpy188III	TCNNGA	6 cut(s)	26, 162, 282, 311, 360, 396
HpyCH4IV	ACGT	3 cut(s)	237, 353, 377
HpyCH4V	TGCA	2 cut(s)	113, 375
HpyF3I	CTNAG	2 cut(s)	173, 273
HpySE526I	ACGT	3 cut(s)	237, 353, 377
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	77, 399
Kzo9I	GATC	1 cut(s)	276
LguI	GCTCTTC	1 cut(s)	309
LpnPI	CCDG	5 cut(s)	11, 81, 163, 169, 296
LweI	GCATC	2 cut(s)	208, 362
MaeII	ACGT	3 cut(s)	237, 353, 377
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	3 cut(s)	217, 326, 344
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	4 cut(s)	21, 62, 86, 325
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	2 cut(s)	116, 182
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	201
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	2 cut(s)	77, 399
NmuCI	GTSAC	1 cut(s)	98
NruI	TCGCGA	1 cut(s)	283
NspI	RCATGY	1 cut(s)	77
PagI	TCATGA	1 cut(s)	395
PciI	ACATGT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	188, 307
PleI	GAGTC	1 cut(s)	250
PmaCI	CACGTG	1 cut(s)	378
PmlI	CACGTG	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	2 cut(s)	354, 378
PscI	ACATGT	1 cut(s)	73
PspCI	CACGTG	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	177
RruI	TCGCGA	1 cut(s)	283
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	250
SetI	ASST	9 cut(s)	10, 144, 179, 240, 250, 321, 356, 380, 391
SfaNI	GCATC	2 cut(s)	208, 362
SmlI	CTYRAG	3 cut(s)	9, 243, 258
SmoI	CTYRAG	3 cut(s)	9, 243, 258
SnaBI	TACGTA	1 cut(s)	354
Sse9I	AATT	4 cut(s)	21, 62, 86, 325
TaiI	ACGT	3 cut(s)	240, 356, 380
TaqI	TCGA	1 cut(s)	191
TasI	AATT	4 cut(s)	21, 62, 86, 325
TfiI	GAWTC	2 cut(s)	188, 307
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	218, 303
TspRI	CASTG	1 cut(s)	60
XapI	RAATTY	2 cut(s)	21, 325
XceI	RCATGY	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	306
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.