Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002269.1

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

32099 .. 33992

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002269.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atggctggaattgaaggtcatgcaatcggaattgatctcggcacaaagtactcatgtgtgggagtttggaagcatgataacaataatgtggaaatcatagtcaacgatcagggaaacaggaccacgccgtcatgtgttgccttcactgatactgagcttttggtaggagaagcagcgtttaatcaggtcgtaagaaaccctgacaactccatcttcgatgcaaagcggttaattggccggaaattcagtgatgcatctgttcaaagtgacaagaagctctggccattcaaggtggaatgcttcccagtttcagaagcttctgatgccatcttggtgcggcgcgtggcggcgcgtcggtggcgacctggagggagtcccccactccccggcgaagatagacctccggattggtcggcaaattgtttgatgagggggagctgcacggagcagaggggacggtctgacggtaacgccgcgtgccggtcgttgtcagtgaggcgtggcctcgggattttccatttggcggacatccccccgccggatgcggcaggaaacagcgtccggatagcaagggaggagttccgctggcggggtttcgctcagcggagacttcgtcacttggaaaatgacaagggagaagttccgctagcgggagaagttccgctggcggtgttcgctcagcggagacttcgttacttggaaaatgacaagggagaagttccgttggcggtgtttcgctcagcggagacctcgtcacttggaaaatgccaagggagaagttccgttggcggtgtttcgctcagcggagacttcgtcacttggaaaatgacaagggagacgttccgctggcggtgtttcgctcagcggagacttcgttacttggaaaatgacaagggagaagttccgctagcggtgtttcactcagcggagacctcgtcacttggaaaatgccaagggagaagttccgttggcggtgtttcgctcagcggagacttcgtcacttggaaaagacaagggagaagttccgctggcggtgtttcgctcagcggagacttcgttacttggaaaatgacaagggagaagttccgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

363

Amino Acids

40.15

Weight (kDa)

9.62

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AccII	CGCG	3 cut(s)	342, 352, 476
AccIII	TCCGGA	2 cut(s)	403, 561
AcoI	YGGCCR	2 cut(s)	235, 281
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	6 cut(s)	386, 480, 523, 538, 589, 650
AgsI	TTSAA	3 cut(s)	14, 263, 289
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	4 cut(s)	157, 277, 317, 438
AluI	AGCT	4 cut(s)	157, 277, 317, 438
Alw26I	GTCTC	9 cut(s)	601, 679, 740, 801, 830, 862, 923, 984, 1044
Ama87I	CYCGRG	1 cut(s)	506
Aor13HI	TCCGGA	2 cut(s)	403, 561
AoxI	GGCC	3 cut(s)	235, 281, 502
ApeKI	GCWGC	2 cut(s)	173, 438
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	342, 352
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	387
AsuNHI	GCTAGC	2 cut(s)	646, 907
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	185, 425
BccI	CCATC	2 cut(s)	218, 335
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	9 cut(s)	601, 679, 740, 801, 830, 862, 923, 984, 1044
BfaI	CTAG	3 cut(s)	647, 908, 1090
BisI	GCNGC	6 cut(s)	174, 338, 348, 439, 474, 546
BlpI	GCTNAGC	7 cut(s)	600, 678, 739, 800, 861, 983, 1043
BlsI	GCNGC	6 cut(s)	175, 339, 349, 440, 475, 547
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	366, 387
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	366, 387
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	5 cut(s)	208, 241, 263, 313, 532
BmtI	GCTAGC	2 cut(s)	650, 911
BmuI	ACTGGG	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	387
Bpu1102I	GCTNAGC	7 cut(s)	600, 678, 739, 800, 861, 983, 1043
BpuMI	CCSGG	1 cut(s)	387
BsaI	GGTCTC	2 cut(s)	740, 923
BsaJI	CCNNGG	4 cut(s)	385, 505, 769, 952
BsaWI	WCCGGW	2 cut(s)	403, 561
Bsc4I	CCNNNNNNNGG	6 cut(s)	386, 480, 523, 538, 589, 650
Bse118I	RCCGGY	1 cut(s)	480
Bse1I	ACTGG	1 cut(s)	305
BseAI	TCCGGA	2 cut(s)	403, 561
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	4 cut(s)	385, 505, 769, 952
BseGI	GGATG	2 cut(s)	528, 547
BseLI	CCNNNNNNNGG	6 cut(s)	386, 480, 523, 538, 589, 650
BseMII	CTCAG	9 cut(s)	144, 614, 692, 753, 814, 875, 936, 997, 1057
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	185, 425
BsgI	GTGCAG	1 cut(s)	424
Bsh1236I	CGCG	3 cut(s)	342, 352, 476
Bsh1285I	CGRYCG	1 cut(s)	485
BshFI	GGCC	3 cut(s)	237, 283, 504
BsiEI	CGRYCG	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	6 cut(s)	238, 387, 404, 481, 539, 562
BslFI	GGGAC	2 cut(s)	360, 468
BslI	CCNNNNNNNGG	6 cut(s)	386, 480, 523, 538, 589, 650
BsmAI	GTCTC	9 cut(s)	601, 679, 740, 801, 830, 862, 923, 984, 1044
BsmBI	CGTCTC	1 cut(s)	830
BsmFI	GGGAC	2 cut(s)	360, 468
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	237, 283, 504
Bso31I	GGTCTC	2 cut(s)	740, 923
BsoBI	CYCGRG	1 cut(s)	506
Bsp13I	TCCGGA	2 cut(s)	403, 561
Bsp143I	GATC	2 cut(s)	34, 106
Bsp1720I	GCTNAGC	7 cut(s)	600, 678, 739, 800, 861, 983, 1043
BspANI	GGCC	3 cut(s)	237, 283, 504
BspCNI	CTCAG	9 cut(s)	145, 613, 691, 752, 813, 874, 935, 996, 1056
BspEI	TCCGGA	2 cut(s)	403, 561
BspFNI	CGCG	3 cut(s)	342, 352, 476
BspOI	GCTAGC	2 cut(s)	650, 911
BspTNI	GGTCTC	2 cut(s)	740, 923
BsrFI	RCCGGY	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	480
BssECI	CCNNGG	4 cut(s)	385, 505, 769, 952
BssMI	GATC	2 cut(s)	34, 106
BssT1I	CCWWGG	2 cut(s)	769, 952
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	459, 467
BstC8I	GCNNGC	7 cut(s)	478, 587, 648, 666, 848, 909, 1030
BstDEI	CTNAG	9 cut(s)	153, 600, 678, 739, 800, 861, 922, 983, 1043
BstF5I	GGATG	2 cut(s)	528, 547
BstFNI	CGCG	3 cut(s)	342, 352, 476
BstHHI	GCGC	2 cut(s)	342, 352
BstKTI	GATC	2 cut(s)	37, 109
BstMAI	GTCTC	9 cut(s)	601, 679, 740, 801, 830, 862, 923, 984, 1044
BstMBI	GATC	2 cut(s)	34, 106
BstMCI	CGRYCG	1 cut(s)	485
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 358, 674
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	364, 385
BstUI	CGCG	3 cut(s)	342, 352, 476
BstV1I	GCAGC	2 cut(s)	185, 425
BsuRI	GGCC	3 cut(s)	237, 283, 504
BtsCI	GGATG	2 cut(s)	528, 547
BtsIMutI	CAGTG	3 cut(s)	144, 253, 498
Cac8I	GCNNGC	7 cut(s)	478, 587, 648, 666, 848, 909, 1030
CfoI	GCGC	2 cut(s)	342, 352
Cfr10I	RCCGGY	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	2 cut(s)	341, 547
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	4 cut(s)	20, 54, 74, 132
CviJI	RGCY	8 cut(s)	5, 157, 237, 277, 283, 317, 438, 504
CviKI_1	RGCY	8 cut(s)	5, 157, 237, 277, 283, 317, 438, 504
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	9 cut(s)	153, 600, 678, 739, 800, 861, 922, 983, 1043
DpnI	GATC	2 cut(s)	36, 108
DpnII	GATC	2 cut(s)	34, 106
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	2 cut(s)	235, 281
EciI	GGCGGA	1 cut(s)	539
Eco130I	CCWWGG	2 cut(s)	769, 952
Eco31I	GGTCTC	2 cut(s)	740, 923
Eco47I	GGWCC	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	769, 952
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	769, 952
Esp3I	CGTCTC	1 cut(s)	830
FaeI	CATG	4 cut(s)	23, 57, 77, 135
FaiI	YATR	5 cut(s)	21, 55, 75, 98, 133
FaqI	GGGAC	2 cut(s)	360, 468
FatI	CATG	4 cut(s)	19, 53, 73, 131
FauI	CCCGC	3 cut(s)	543, 582, 643
Fnu4HI	GCNGC	6 cut(s)	174, 338, 348, 439, 474, 546
FokI	GGATG	2 cut(s)	515, 554
Fsp4HI	GCNGC	6 cut(s)	174, 338, 348, 439, 474, 546
FspBI	CTAG	3 cut(s)	647, 908, 1090
GlaI	GCGC	2 cut(s)	341, 351
GluI	GCNGC	6 cut(s)	174, 338, 348, 439, 474, 546
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	237, 283, 504
HapII	CCGG	6 cut(s)	238, 387, 404, 481, 539, 562
HgaI	GACGC	2 cut(s)	341, 547
HhaI	GCGC	2 cut(s)	342, 352
Hin1II	CATG	4 cut(s)	23, 57, 77, 135
Hin6I	GCGC	2 cut(s)	340, 350
HinP1I	GCGC	2 cut(s)	340, 350
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	6 cut(s)	238, 387, 404, 481, 539, 562
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	4 cut(s)	29, 313, 322, 463
Hpy188III	TCNNGA	3 cut(s)	404, 508, 562
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	2 cut(s)	8, 151
HpyCH4III	ACNGT	2 cut(s)	459, 467
HpyCH4IV	ACGT	1 cut(s)	839
HpyCH4V	TGCA	4 cut(s)	23, 221, 254, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 358, 674
HpyF3I	CTNAG	9 cut(s)	153, 600, 678, 739, 800, 861, 922, 983, 1043
HpySE526I	ACGT	1 cut(s)	839
Hsp92II	CATG	4 cut(s)	23, 57, 77, 135
HspAI	GCGC	2 cut(s)	340, 350
Kpn2I	TCCGGA	2 cut(s)	403, 561
Kzo9I	GATC	2 cut(s)	34, 106
LmnI	GCTCC	2 cut(s)	435, 445
Lsp1109I	GCAGC	2 cut(s)	185, 425
LweI	GCATC	5 cut(s)	208, 241, 263, 313, 532
MaeI	CTAG	3 cut(s)	647, 908, 1090
MaeII	ACGT	1 cut(s)	839
MalI	GATC	2 cut(s)	36, 108
MboI	GATC	2 cut(s)	34, 106
MboII	GAAGA	2 cut(s)	205, 404
MlsI	TGGCCA	1 cut(s)	283
MluCI	AATT	5 cut(s)	9, 30, 231, 242, 418
MluNI	TGGCCA	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	9 cut(s)	362, 411, 423, 444, 489, 515, 568, 760, 943
Mox20I	TGGCCA	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	256
MroI	TCCGGA	2 cut(s)	403, 561
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	2 cut(s)	180, 230
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	283
MspI	CCGG	6 cut(s)	238, 387, 404, 481, 539, 562
MspR9I	CCNGG	2 cut(s)	366, 387
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	3 cut(s)	342, 352, 476
MwoI	GCNNNNNNNGC	3 cut(s)	323, 358, 674
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	34, 106
NheI	GCTAGC	2 cut(s)	646, 907
NlaIII	CATG	4 cut(s)	23, 57, 77, 135
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	6 cut(s)	266, 614, 753, 814, 936, 997
NsiI	ATGCAT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	302
PflFI	GACNNNGTC	5 cut(s)	612, 751, 812, 934, 995
PkrI	GCNGC	6 cut(s)	175, 339, 349, 440, 475, 547
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	120
PsyI	GACNNNGTC	5 cut(s)	612, 751, 812, 934, 995
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	180, 230
SatI	GCNGC	6 cut(s)	174, 338, 348, 439, 474, 546
Sau3AI	GATC	2 cut(s)	34, 106
Sau96I	GGNCC	1 cut(s)	120
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	2 cut(s)	366, 387
SfaNI	GCATC	5 cut(s)	208, 241, 263, 313, 532
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	5 cut(s)	9, 30, 231, 242, 418
SspMI	CTAG	3 cut(s)	647, 908, 1090
StyD4I	CCNGG	2 cut(s)	364, 385
StyI	CCWWGG	2 cut(s)	769, 952
TaaI	ACNGT	2 cut(s)	459, 467
TaiI	ACGT	1 cut(s)	842
TaqI	TCGA	1 cut(s)	216
TasI	AATT	5 cut(s)	9, 30, 231, 242, 418
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	4 cut(s)	340, 350, 476, 548
Tru1I	TTAA	2 cut(s)	180, 230
Tru9I	TTAA	2 cut(s)	180, 230
TscAI	CASTG	3 cut(s)	151, 253, 498
TseFI	GTSAC	6 cut(s)	266, 614, 753, 814, 936, 997
TseI	GCWGC	2 cut(s)	173, 438
Tsp45I	GTSAC	6 cut(s)	266, 614, 753, 814, 936, 997
TspGWI	ACGGA	4 cut(s)	458, 711, 772, 955
TspRI	CASTG	3 cut(s)	151, 253, 498
Tth111I	GACNNNGTC	5 cut(s)	612, 751, 812, 934, 995
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	242
XspI	CTAG	3 cut(s)	647, 908, 1090
ZrmI	AGTACT	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.