Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Forward (+)

73694189 .. 73696981

Gene Structure 2793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG558600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTTTTTTGCTTCGCGACTCTGATTGCTCATATGAAGACAGAGATAGATGCTAGTCGTGGTAAAGACATCTCTCAAGGTGAATTGACCCAAGGGCAACAAACTCAGATCGCTCGAAATGAACAAAGAACAGAACAGATTCTGGAAGAGCTTGAAAATTTGGAAGAGACACTGAAAACATGGAATGAGAGTAGCCGAGAAAGTTTAGGTGCACGTGGGAAGAAGATACATTATAAACATAAAAGCGGCATGGTCGCAGTGAAAGCTGTATGCGCACTCAGCCGCAAGGCTTTCCATACTTCACAAGAATCTAAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

106

Amino Acids

11.99

Weight (kDa)

8.62

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc16I	TGCGCA	1 cut(s)	274
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	246, 283
AcsI	RAATTY	1 cut(s)	157
AcvI	CACGTG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	2 cut(s)	151, 266
AluI	AGCT	2 cut(s)	151, 266
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	161
Alw44I	GTGCAC	1 cut(s)	210
AlwNI	CAGNNNCTG	1 cut(s)	142
ApaLI	GTGCAC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	157
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	247, 283
BlsI	GCNGC	2 cut(s)	248, 284
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	119, 292
BseSI	GKGCMC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	108
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	2 cut(s)	246, 283
BspCNI	CTCAG	2 cut(s)	118, 291
BspFNI	CGCG	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	91
Bst6I	CTCTTC	2 cut(s)	141, 159
BstBAI	YACGTR	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	105, 278, 312
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 272, 279
BstSLI	GKGCMC	1 cut(s)	214
BstUI	CGCG	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	170, 264
BtuMI	TCGCGA	1 cut(s)	17
CaiI	CAGNNNCTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	275
CviAII	CATG	2 cut(s)	180, 250
CviJI	RGCY	5 cut(s)	151, 195, 266, 282, 290
CviKI_1	RGCY	5 cut(s)	151, 195, 266, 282, 290
DdeI	CTNAG	3 cut(s)	105, 278, 312
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	141, 159
EarI	CTCTTC	2 cut(s)	141, 159
Eco130I	CCWWGG	1 cut(s)	91
Eco72I	CACGTG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	183, 253
FaiI	YATR	9 cut(s)	33, 35, 181, 234, 240, 251, 271, 297, 319
FatI	CATG	2 cut(s)	179, 249
FauNDI	CATATG	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	247, 283
Fsp4HI	GCNGC	2 cut(s)	247, 283
FspAI	RTGCGCAY	1 cut(s)	274
FspBI	CTAG	1 cut(s)	54
FspI	TGCGCA	1 cut(s)	274
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	247, 283
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	183, 253
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	19, 139, 308
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	24, 108
Hpy188III	TCNNGA	2 cut(s)	16, 143
Hpy8I	GTNNAC	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 272, 279
HpyF3I	CTNAG	3 cut(s)	105, 278, 312
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	183, 253
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	108
LguI	GCTCTTC	1 cut(s)	141
LpnPI	CCDG	1 cut(s)	128
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	214
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	5 cut(s)	49, 158, 176, 232, 235
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	2 cut(s)	83, 157
MlyI	GAGTC	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	138
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	263, 272, 279
NdeI	CATATG	1 cut(s)	33
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	183, 253
NmeAIII	GCCGAG	1 cut(s)	221
NruI	TCGCGA	1 cut(s)	17
NsbI	TGCGCA	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	139, 308
PkrI	GCNGC	2 cut(s)	248, 284
PleI	GAGTC	1 cut(s)	13
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	141
SatI	GCNGC	2 cut(s)	247, 283
Sau3AI	GATC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	5 cut(s)	82, 153, 211, 217, 268
SfaNI	GCATC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	83, 157
SsiI	CCGC	2 cut(s)	246, 283
SspMI	CTAG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	83, 157
TauI	GCSGC	2 cut(s)	249, 285
TfiI	GAWTC	2 cut(s)	139, 308
TscAI	CASTG	2 cut(s)	177, 264
TspDTI	ATGAA	2 cut(s)	50, 135
TspRI	CASTG	2 cut(s)	177, 264
VneI	GTGCAC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.