Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8235471.1

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 725

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8235471.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggtagtgacctttctggttaacacgttatttttaattttcttacagattctggaagagcttgaaaatttggaagagacactgaatgagagtattcgagaaagtttaggtgcacgtgttgggaagctatctcatggtaagaagaaaggagcaattgaagaagaagaagaacttttgagtgatgatgatgaattttatgatcggacaaagaagccttctagcaaaaaggctagtgaaaacccctcaattgaaaccgctgatactcttcttgataagagagatgcaatcacaaaagaaatggagaacaagaaggagctgctttcaattgagaaaaacagactggcatcagaaactacagaagacaccgatgctggagacgcactggatgcatacatgtctgggctttcatctaagctaggtgtggaattctgctctaatgaacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

148

Amino Acids

16.56

Weight (kDa)

4.49

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	255
AcsI	RAATTY	3 cut(s)	67, 191, 425
AcvI	CACGTG	1 cut(s)	116
AflIII	ACRYGT	3 cut(s)	24, 115, 393
AgsI	TTSAA	4 cut(s)	65, 158, 251, 324
AluBI	AGCT	4 cut(s)	61, 127, 316, 415
AluI	AGCT	4 cut(s)	61, 127, 316, 415
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	71, 369
Alw44I	GTGCAC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	52
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	3 cut(s)	67, 191, 425
BaeGI	GKGCMC	1 cut(s)	115
BbrPI	CACGTG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	71, 369
BfaI	CTAG	3 cut(s)	219, 231, 416
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
BmsI	GCATC	4 cut(s)	271, 353, 358, 376
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	345, 387
BseGI	GGATG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	345, 387
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	71, 369
BsmBI	CGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	345, 387
BssMI	GATC	1 cut(s)	199
Bst6I	CTCTTC	3 cut(s)	51, 69, 270
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	71, 369
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 386
BstNSI	RCATGY	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	80, 380
CaiI	CAGNNNCTG	1 cut(s)	52
CseI	GACGC	1 cut(s)	386
CviAII	CATG	2 cut(s)	134, 394
CviJI	RGCY	7 cut(s)	61, 127, 214, 230, 316, 403, 415
CviKI_1	RGCY	7 cut(s)	61, 127, 214, 230, 316, 403, 415
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	51, 69, 270
EarI	CTCTTC	3 cut(s)	51, 69, 270
Eco72I	CACGTG	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	425
EcoT22I	ATGCAT	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	2 cut(s)	137, 397
FaiI	YATR	4 cut(s)	135, 198, 391, 395
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	2 cut(s)	133, 393
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	3 cut(s)	219, 231, 416
GluI	GCNGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	2 cut(s)	137, 397
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	1 cut(s)	49
HpaI	GTTAAC	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	22, 113
Hpy188I	TCNGA	2 cut(s)	204, 349
Hpy188III	TCNNGA	3 cut(s)	53, 98, 269
Hpy8I	GTNNAC	2 cut(s)	22, 113
HpyAV	CCTTC	2 cut(s)	225, 304
HpyCH4IV	ACGT	2 cut(s)	26, 115
HpyCH4V	TGCA	3 cut(s)	113, 284, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 386
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	2 cut(s)	26, 115
Hsp92II	CATG	2 cut(s)	137, 397
KspAI	GTTAAC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	149, 313
LpnPI	CCDG	6 cut(s)	2, 38, 326, 357, 368, 384
Lsp1109I	GCAGC	1 cut(s)	303
LweI	GCATC	4 cut(s)	271, 353, 358, 376
MaeI	CTAG	3 cut(s)	219, 231, 416
MaeII	ACGT	2 cut(s)	26, 115
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	9 cut(s)	68, 86, 154, 170, 173, 176, 179, 257, 371
MfeI	CAATTG	3 cut(s)	153, 246, 324
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	7 cut(s)	36, 67, 153, 191, 246, 324, 425
MnlI	CCTC	1 cut(s)	253
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	2 cut(s)	21, 35
MspA1I	CMGCKG	1 cut(s)	257
MunI	CAATTG	3 cut(s)	153, 246, 324
MwoI	GCNNNNNNNGC	2 cut(s)	377, 386
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	137, 397
NmuCI	GTSAC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	1 cut(s)	397
PciI	ACATGT	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	318
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	116
PscI	ACATGT	1 cut(s)	393
PspCI	CACGTG	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	21, 35
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	9 cut(s)	14, 29, 63, 112, 118, 129, 318, 417, 421
SfaNI	GCATC	4 cut(s)	271, 353, 358, 376
SfcI	CTRYAG	1 cut(s)	354
Sse9I	AATT	7 cut(s)	36, 67, 153, 191, 246, 324, 425
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	3 cut(s)	219, 231, 416
TaiI	ACGT	2 cut(s)	29, 118
TaqI	TCGA	1 cut(s)	97
TasI	AATT	7 cut(s)	36, 67, 153, 191, 246, 324, 425
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	21, 35
Tru9I	TTAA	2 cut(s)	21, 35
TscAI	CASTG	2 cut(s)	87, 387
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	204, 396
TspRI	CASTG	2 cut(s)	87, 387
VneI	GTGCAC	1 cut(s)	111
XapI	RAATTY	3 cut(s)	67, 191, 425
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	3 cut(s)	219, 231, 416
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.