Inner membrane component of T3SS, cytoplasmic domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531 |
| rosa_multiflora | Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110 |
| rosa_rugosa | Rorug01G0234300 Rorug02G0508600 Rorug02G0508900 |
| rosa_samantha | Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300 |
| rosa_wichuraiana | Rw7G019870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 261 |
| AciI | CCGC | 1 cut(s) | 302 |
| AcyI | GRCGYC | 1 cut(s) | 258 |
| AgsI | TTSAA | 3 cut(s) | 38, 53, 344 |
| AluBI | AGCT | 4 cut(s) | 56, 113, 160, 340 |
| AluI | AGCT | 4 cut(s) | 56, 113, 160, 340 |
| Alw26I | GTCTC | 1 cut(s) | 265 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 331 |
| AsuHPI | GGTGA | 1 cut(s) | 137 |
| BbvCI | CCTCAGC | 1 cut(s) | 114 |
| BccI | CCATC | 2 cut(s) | 62, 116 |
| BcoDI | GTCTC | 1 cut(s) | 265 |
| BmsI | GCATC | 4 cut(s) | 38, 81, 85, 229 |
| Bpu10I | CCTNAGC | 1 cut(s) | 114 |
| BpuEI | CTTGAG | 2 cut(s) | 249, 264 |
| BsaHI | GRCGYC | 1 cut(s) | 258 |
| BseGI | GGATG | 2 cut(s) | 100, 124 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BsmAI | GTCTC | 1 cut(s) | 265 |
| BsmBI | CGTCTC | 1 cut(s) | 265 |
| Bsp143I | GATC | 1 cut(s) | 19 |
| BspACI | CCGC | 1 cut(s) | 302 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspQI | GCTCTTC | 1 cut(s) | 330 |
| BssMI | GATC | 1 cut(s) | 19 |
| BssNI | GRCGYC | 1 cut(s) | 258 |
| Bst6I | CTCTTC | 1 cut(s) | 330 |
| BstACI | GRCGYC | 1 cut(s) | 258 |
| BstC8I | GCNNGC | 1 cut(s) | 27 |
| BstDEI | CTNAG | 1 cut(s) | 114 |
| BstF5I | GGATG | 2 cut(s) | 100, 124 |
| BstKTI | GATC | 1 cut(s) | 22 |
| BstMAI | GTCTC | 1 cut(s) | 265 |
| BstMBI | GATC | 1 cut(s) | 19 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 62, 248 |
| BtsCI | GGATG | 2 cut(s) | 100, 124 |
| Cac8I | GCNNGC | 1 cut(s) | 27 |
| CaiI | CAGNNNCTG | 1 cut(s) | 331 |
| CviJI | RGCY | 4 cut(s) | 56, 113, 160, 340 |
| CviKI_1 | RGCY | 4 cut(s) | 56, 113, 160, 340 |
| DdeI | CTNAG | 1 cut(s) | 114 |
| DpnI | GATC | 1 cut(s) | 21 |
| DpnII | GATC | 1 cut(s) | 19 |
| Eam1104I | CTCTTC | 1 cut(s) | 330 |
| EarI | CTCTTC | 1 cut(s) | 330 |
| Esp3I | CGTCTC | 1 cut(s) | 265 |
| FaiI | YATR | 7 cut(s) | 86, 104, 148, 164, 222, 224, 297 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 144, 176 |
| FauI | CCCGC | 1 cut(s) | 295 |
| FauNDI | CATATG | 1 cut(s) | 222 |
| FokI | GGATG | 2 cut(s) | 107, 131 |
| Hin1I | GRCGYC | 1 cut(s) | 258 |
| HindIII | AAGCTT | 1 cut(s) | 54 |
| HinfI | GANTC | 2 cut(s) | 277, 328 |
| HphI | GGTGA | 1 cut(s) | 137 |
| Hpy188III | TCNNGA | 1 cut(s) | 332 |
| HpyCH4IV | ACGT | 1 cut(s) | 258 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 62, 248 |
| HpyF3I | CTNAG | 1 cut(s) | 114 |
| HpySE526I | ACGT | 1 cut(s) | 258 |
| Hsp92I | GRCGYC | 1 cut(s) | 258 |
| Kzo9I | GATC | 1 cut(s) | 19 |
| LguI | GCTCTTC | 1 cut(s) | 330 |
| LpnPI | CCDG | 2 cut(s) | 11, 317 |
| LweI | GCATC | 4 cut(s) | 38, 81, 85, 229 |
| MaeII | ACGT | 1 cut(s) | 258 |
| MalI | GATC | 1 cut(s) | 21 |
| MboI | GATC | 1 cut(s) | 19 |
| MboII | GAAGA | 4 cut(s) | 20, 119, 238, 347 |
| MluCI | AATT | 2 cut(s) | 131, 346 |
| MlyI | GAGTC | 1 cut(s) | 271 |
| MnlI | CCTC | 3 cut(s) | 85, 109, 121 |
| MseI | TTAA | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 62, 248 |
| NdeI | CATATG | 1 cut(s) | 222 |
| NdeII | GATC | 1 cut(s) | 19 |
| PciSI | GCTCTTC | 1 cut(s) | 330 |
| PfeI | GAWTC | 1 cut(s) | 328 |
| PleI | GAGTC | 1 cut(s) | 271 |
| PpsI | GAGTC | 1 cut(s) | 271 |
| PstNI | CAGNNNCTG | 1 cut(s) | 331 |
| SapI | GCTCTTC | 1 cut(s) | 330 |
| SaqAI | TTAA | 1 cut(s) | 134 |
| Sau3AI | GATC | 1 cut(s) | 19 |
| SchI | GAGTC | 1 cut(s) | 271 |
| SetI | ASST | 6 cut(s) | 58, 115, 162, 261, 271, 342 |
| SfaNI | GCATC | 4 cut(s) | 38, 81, 85, 229 |
| SmlI | CTYRAG | 2 cut(s) | 264, 279 |
| SmoI | CTYRAG | 2 cut(s) | 264, 279 |
| Sse9I | AATT | 2 cut(s) | 131, 346 |
| SsiI | CCGC | 1 cut(s) | 302 |
| TaiI | ACGT | 1 cut(s) | 261 |
| TasI | AATT | 2 cut(s) | 131, 346 |
| TfiI | GAWTC | 1 cut(s) | 328 |
| Tru1I | TTAA | 1 cut(s) | 134 |
| Tru9I | TTAA | 1 cut(s) | 134 |
| TspDTI | ATGAA | 2 cut(s) | 239, 324 |
| ZraI | GACGTC | 1 cut(s) | 259 |