Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

11049327 .. 11052297

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGTTCCGGGTTTTGGGCAAGGAAATGTGGGGAGGATCTCATGATTGCACCAGACCATAAACAGAAACAAAACGGAAACAAAATGGGTGGGAGGATCTCTCTCTCTCGGCCGAAACAAAACCAAAAACAGAGCCAACTTCTTCAACTCATCTCTCCCACCTCAGGCCACCTCAAGGCACCAGACCACATCCCACGCTCTCGCCTCGTCCTTGCACAGCTTCCAGTGGCTACCTTGCACCGCAACACGGCCGGCAGCGGCGGTGGAGGACACGATTCCATACATGGCGAAACAATTCGACGCCAGTCAAGATTACAGGATAAGGCAAGCAAACTCCTATACGTTCAATGCAACACATGGCAAAGAGTAGATAAAATGTTTCAAAGTGCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

131

Amino Acids

14.58

Weight (kDa)

10.77

Isoelectric Point (pI)

65.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AciI	CCGC	3 cut(s)	241, 258, 261
AclWI	GGATC	2 cut(s)	45, 104
AcoI	YGGCCR	2 cut(s)	110, 249
AcyI	GRCGYC	1 cut(s)	301
AfiI	CCNNNNNNNGG	4 cut(s)	15, 164, 175, 247
AgsI	TTSAA	3 cut(s)	146, 347, 383
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
AlwI	GGATC	2 cut(s)	45, 104
AoxI	GGCC	3 cut(s)	110, 166, 249
ApeKI	GCWGC	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	294
AsuC2I	CCSGG	1 cut(s)	10
AxyI	CCTNAGG	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	10
BisI	GCNGC	2 cut(s)	256, 259
BlsI	GCNGC	2 cut(s)	257, 260
Bme1390I	CCNGG	2 cut(s)	10, 391
BmiI	GGNNCC	2 cut(s)	7, 180
BmrFI	CCNGG	2 cut(s)	10, 391
BoxI	GACNNNNGTC	1 cut(s)	304
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 164, 175, 247
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	224, 304
Bse21I	CCTNAGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	15, 164, 175, 247
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	224, 304
BseX3I	CGGCCG	2 cut(s)	110, 249
BseXI	GCAGC	1 cut(s)	267
Bsh1285I	CGRYCG	2 cut(s)	113, 252
BshFI	GGCC	3 cut(s)	112, 168, 251
BshNI	GGYRCC	1 cut(s)	178
BsiEI	CGRYCG	2 cut(s)	113, 252
BsiSI	CCGG	2 cut(s)	9, 252
BslI	CCNNNNNNNGG	4 cut(s)	15, 164, 175, 247
BsnI	GGCC	3 cut(s)	112, 168, 251
Bsp143I	GATC	2 cut(s)	37, 96
BspACI	CCGC	3 cut(s)	241, 258, 261
BspANI	GGCC	3 cut(s)	112, 168, 251
BspCNI	CTCAG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	7, 180
BspPI	GGATC	2 cut(s)	45, 104
BspT107I	GGYRCC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	224, 304
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	2 cut(s)	37, 96
BssNI	GRCGYC	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	253, 328
BstDEI	CTNAG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	40, 99
BstMBI	GATC	2 cut(s)	37, 96
BstMCI	CGRYCG	2 cut(s)	113, 252
BstNI	CCWGG	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	8, 389
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	37, 96
BstYI	RGATCY	2 cut(s)	37, 96
BstZI	CGGCCG	2 cut(s)	110, 249
Bsu36I	CCTNAGG	1 cut(s)	163
BsuRI	GGCC	3 cut(s)	112, 168, 251
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	253, 328
CciI	TCATGA	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	251
CseI	GACGC	1 cut(s)	309
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	3 cut(s)	43, 284, 357
CviJI	RGCY	6 cut(s)	112, 135, 168, 220, 230, 251
CviKI_1	RGCY	6 cut(s)	112, 135, 168, 220, 230, 251
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	2 cut(s)	39, 98
DpnII	GATC	2 cut(s)	37, 96
EaeI	YGGCCR	2 cut(s)	110, 249
EagI	CGGCCG	2 cut(s)	110, 249
EclXI	CGGCCG	2 cut(s)	110, 249
Eco52I	CGGCCG	2 cut(s)	110, 249
Eco81I	CCTNAGG	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	389
FaeI	CATG	3 cut(s)	46, 287, 360
FaiI	YATR	6 cut(s)	44, 60, 281, 285, 340, 358
FatI	CATG	3 cut(s)	42, 283, 356
Fnu4HI	GCNGC	2 cut(s)	256, 259
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	256, 259
GluI	GCNGC	2 cut(s)	256, 259
HaeIII	GGCC	3 cut(s)	112, 168, 251
HapII	CCGG	2 cut(s)	9, 252
HgaI	GACGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	46, 287, 360
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	9, 252
Hpy188III	TCNNGA	2 cut(s)	43, 309
Hpy99I	CGWCG	1 cut(s)	303
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	50, 215, 238, 351
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	46, 287, 360
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	37, 96
LpnPI	CCDG	9 cut(s)	22, 66, 150, 195, 237, 265, 302, 317, 376
Lsp1109I	GCAGC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	342
MalI	GATC	2 cut(s)	39, 98
MboI	GATC	2 cut(s)	37, 96
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	2 cut(s)	37, 96
MluCI	AATT	1 cut(s)	294
MnlI	CCTC	6 cut(s)	28, 87, 172, 182, 215, 260
MroNI	GCCGGC	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	2 cut(s)	9, 252
MspR9I	CCNGG	2 cut(s)	10, 391
MvaI	CCWGG	1 cut(s)	391
NaeI	GCCGGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	2 cut(s)	37, 96
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	3 cut(s)	46, 287, 360
NlaIV	GGNNCC	2 cut(s)	7, 180
NmeAIII	GCCGAG	1 cut(s)	88
PagI	TCATGA	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	257, 260
PshAI	GACNNNNGTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	7, 180
PsuI	RGATCY	2 cut(s)	37, 96
SatI	GCNGC	2 cut(s)	256, 259
Sau3AI	GATC	2 cut(s)	37, 96
ScrFI	CCNGG	2 cut(s)	10, 391
SetI	ASST	6 cut(s)	164, 174, 222, 236, 345, 395
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	3 cut(s)	241, 258, 261
StyD4I	CCNGG	2 cut(s)	8, 389
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	298
TasI	AATT	1 cut(s)	294
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	275
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.