Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Forward (+)

23739287 .. 23746218

Gene Structure 6932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG249200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGTGATTGTTTTCAAATACCCTACCATCCGTACAAGGTTAGTGCCAATTCTAGTGAAAACACTGGAAAGCAGCAGGCCCAAAAGGCCCGTCGTTGTACATAAGAAATACCACTCAGCAATTGCTAATCGACATAAGAAATCAACCCTCTCTCTGCACTTGCTCTCTCATCTTGGTTCCGTATCTCTAGAAAAAGGCTTGAAAAGTTTTTTAAGAGAGTACAAGATGCGTGAAGATATTTTAGATCAGCAGGCATCACTTCAGCGAGCTAGACTTGAAGCTTCTCTTGCTGATGGCATCTCTTGGGGTATGGCAGAGGATGCCATTATAGAAGAAGCTGAGCTTGCTGATATTCTTGTGGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATGTTCAAGAACTTGCATCATCTTCTGAACTCATTGCGGCCCCATCAGGCTAGGGCAACACTAGTTCACATTCTAGAACTTCATATAAAACGACGTAAACAAGCTGTGGAGGATGTAAAGAGGAGGAGAGAAGAAGCACAGGCACTTCTGAAGGAGTCCCTTGAATCGTTGGAGGACACTAGTCCATCTCTTATGTTGAAATTGGGAGGGCTCATATATGTTCCTATTCAATTATCAGAGCCCCTCAGACAGTTTCATCTAATACCTTTAGGGAGGGTCATGGAATCCCACTGGTCAAAGTTTCTCGGACAGACAGTTGTATCTAGTACCGTCATGCTTTTATATCAGAAACTTCTGGTTTTACCTTTCTATACTAGTGTTGAGAGGAAAGTAGTCCATCTAGCTGTTATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

273

Amino Acids

31.4

Weight (kDa)

9.79

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	113 - 185	1.1e-19	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	442
AcuI	CTGAAG	2 cut(s)	245, 575
AfaI	GTAC	4 cut(s)	34, 99, 221, 733
AgsI	TTSAA	8 cut(s)	16, 202, 278, 412, 569, 604, 635, 818
AhlI	ACTAGT	3 cut(s)	466, 584, 779
AluBI	AGCT	6 cut(s)	269, 281, 338, 343, 509, 809
AluI	AGCT	6 cut(s)	269, 281, 338, 343, 509, 809
Alw26I	GTCTC	1 cut(s)	358
AoxI	GGCC	3 cut(s)	77, 86, 443
ApeKI	GCWGC	1 cut(s)	72
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
AspS9I	GGNCC	3 cut(s)	78, 87, 444
AsuHPI	GGTGA	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BanII	GRGCYC	2 cut(s)	618, 648
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	6 cut(s)	35, 287, 376, 456, 598, 810
BcoDI	GTCTC	1 cut(s)	358
BcuI	ACTAGT	3 cut(s)	466, 584, 779
BglI	GCCNNNNNGGC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	73, 443
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	2 cut(s)	74, 444
BmgT120I	GGNCC	3 cut(s)	78, 87, 444
BmiI	GGNNCC	2 cut(s)	178, 446
BmsI	GCATC	5 cut(s)	216, 263, 306, 310, 430
BoxI	GACNNNNGTC	1 cut(s)	585
Bpu1102I	GCTNAGC	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	358
Bse1I	ACTGG	2 cut(s)	69, 701
Bse3DI	GCAATG	1 cut(s)	437
BseGI	GGATG	3 cut(s)	27, 325, 523
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	3 cut(s)	129, 330, 664
BseNI	ACTGG	2 cut(s)	69, 701
BseRI	GAGGAG	2 cut(s)	541, 544
BseXI	GCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	79, 88, 445
BslFI	GGGAC	1 cut(s)	547
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	3 cut(s)	79, 88, 445
Bso31I	GGTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	618, 648
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	339
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	3 cut(s)	79, 88, 445
BspCNI	CTCAG	3 cut(s)	128, 331, 663
BspLI	GGNNCC	2 cut(s)	178, 446
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	69, 701
BssMI	GATC	1 cut(s)	244
Bst4CI	ACNGT	3 cut(s)	657, 721, 736
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	77, 252, 267, 345
BstDEI	CTNAG	3 cut(s)	115, 339, 650
BstF5I	GGATG	3 cut(s)	27, 325, 523
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 287, 320, 344
BstPAI	GACNNNNGTC	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	79, 88, 445
BtsCI	GGATG	3 cut(s)	27, 325, 523
BtsIMutI	CAGTG	2 cut(s)	62, 694
Cac8I	GCNNGC	4 cut(s)	77, 252, 267, 345
Cfr13I	GGNCC	3 cut(s)	78, 87, 444
Csp6I	GTAC	4 cut(s)	33, 98, 220, 732
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	2 cut(s)	685, 739
CviQI	GTAC	4 cut(s)	33, 98, 220, 732
DdeI	CTNAG	3 cut(s)	115, 339, 650
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	618, 648
Eco31I	GGTCTC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	245, 575
EcoT38I	GRGCYC	2 cut(s)	618, 648
FaeI	CATG	2 cut(s)	688, 742
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 327, 359
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	2 cut(s)	684, 738
Fnu4HI	GCNGC	2 cut(s)	73, 443
FokI	GGATG	3 cut(s)	14, 332, 530
FriOI	GRGCYC	2 cut(s)	618, 648
Fsp4HI	GCNGC	2 cut(s)	73, 443
GluI	GCNGC	2 cut(s)	73, 443
HaeIII	GGCC	3 cut(s)	79, 88, 445
Hin1II	CATG	2 cut(s)	688, 742
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	3 cut(s)	560, 569, 689
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	472, 503
Hpy188I	TCNGA	6 cut(s)	432, 555, 643, 653, 713, 753
Hpy188III	TCNNGA	3 cut(s)	188, 412, 479
Hpy8I	GTNNAC	2 cut(s)	472, 503
Hpy99I	CGWCG	2 cut(s)	95, 501
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	3 cut(s)	657, 721, 736
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	3 cut(s)	157, 380, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 287, 320, 344
HpyF3I	CTNAG	3 cut(s)	115, 339, 650
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	688, 742
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	7 cut(s)	50, 61, 236, 437, 530, 682, 746
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	5 cut(s)	216, 263, 306, 310, 430
MaeII	ACGT	1 cut(s)	499
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	5 cut(s)	245, 344, 404, 419, 548
MfeI	CAATTG	1 cut(s)	120
MhlI	GDGCHC	2 cut(s)	618, 648
MluCI	AATT	4 cut(s)	48, 120, 605, 635
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	555
MseI	TTAA	1 cut(s)	212
MunI	CAATTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	4 cut(s)	85, 287, 320, 344
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	688, 742
NlaIV	GGNNCC	2 cut(s)	178, 446
PfeI	GAWTC	2 cut(s)	569, 689
PkrI	GCNGC	2 cut(s)	74, 444
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PshAI	GACNNNNGTC	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	178, 446
PspPI	GGNCC	3 cut(s)	78, 87, 444
RsaI	GTAC	4 cut(s)	34, 99, 221, 733
RsaNI	GTAC	4 cut(s)	33, 98, 220, 732
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	2 cut(s)	73, 443
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	3 cut(s)	78, 87, 444
SchI	GAGTC	1 cut(s)	569
SduI	GDGCHC	2 cut(s)	618, 648
SfaNI	GCATC	5 cut(s)	216, 263, 306, 310, 430
SfiI	GGCCNNNNNGGCC	1 cut(s)	85
SpeI	ACTAGT	3 cut(s)	466, 584, 779
Sse9I	AATT	4 cut(s)	48, 120, 605, 635
SsiI	CCGC	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	657, 721, 736
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	130
TasI	AATT	4 cut(s)	48, 120, 605, 635
TatI	WGTACW	2 cut(s)	97, 219
TauI	GCSGC	1 cut(s)	445
TfiI	GAWTC	2 cut(s)	569, 689
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	2 cut(s)	69, 701
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	476, 650
TspGWI	ACGGA	2 cut(s)	20, 169
TspRI	CASTG	2 cut(s)	69, 701
XbaI	TCTAGA	2 cut(s)	187, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.