Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Forward (+)

63994990 .. 63997635

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0508900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGGAAGTTGCAAGCCCACTAAAAGATAGTTCTTCTGTATCTTCAAGCCCTTTCTCTTCTCCAAATGTTGGAGCCTTGCTCAAGATTAAGATAATTTCATGGACTCAAGAGACTGGTTTGCCTGTTTCTGTTAGTGTTCGAGTTGGCGGTAAGACCTTTAACCTTCACAAGTACCCAATATTTTCAAAAAGTGGGTATTTCAAGAAAAGGATGAATGACTCAGCTGAGGTTGAGCTACCACCAGACTTCCCTGGAGGGCCAGAGACCTTTGAGATGATTGCATTGTTTATCTATGGCTCCTCCACATTGATTGACCCTTTCAATGTGGTAGCCCTGAGATGTGCAGCTGAGTTTCTAGAAATGACAGAAGAATACTCTTCTGGCAACCTCTGCGAGCGCTTTGATCTCTACTTAAACCAAGTGGTCATGCAGAGTTGGAATGACACCTTAATAGTACTCCAAAAGTGCCAAACTTTGCTTCCATGGTCCGAAGACTTGTTGATCGTGAGCCGCTGCATTGAGTGCCTAGCATTCATGGCTTGTATGGAGATTCTTGATCCAGAGAGAAGGCGTGACACACCGGTACTCACACTGGACACATTGAGCACCAGAAATTGGAGCTGTGAAATGGGGAAGGAGATTATGAGTCAGGACCTCTGGATCAAGGATCTCATTGCTTTACCATTTGGATTCTTCAAGAGGATAATAGGGTCCTTGAGAAGACAAGGTATGAAAGAAAAGTATTTGAGCCCCATTATTGTTTTCTATGCTAACAAATGGGTACTTTCAAAGAAGACAATCCAATTTTGGGAGAACTCTGGTCACAGAATTGGGGATGATCATAAAGTTTCAGTTATCCTCCAAGGTGTTCTTGATTTGCTTCCCAAGGGGGAGAAGGCTAGTCGAGCAATCCCCGTTGGGTTTTACTTTGCAATTCTCTCTACATCCCTTGAAGTAGGTTTGAGAGGTGATAGTAAGGCAAAGTTGGAAGAGCAGATTGTATCTCAACTGCACTTTGCCCAACTGGAAGACTTTATCTTTCCAAAAAGTGGGACTGAGTCAATATCTTCTAGCATGGAGCTGGCTACAATGGAGAGCATAATTTCAACATATGTATCAGCTAATTTGGACAGGGATCATAGCCTTTCAGCAGGCAACTCAATTGTTGCAGAATTGTGGGATGCATATCTTTCTCACATAGCTACTGATCCAAACATGCAGCCTAAAAGATTCATGGAACTCATCGAAAGAGTACCGATATCCTACAGACACAATCATGACAAACTCTACAGAGCAATGAACACCTTCTTGCAGGCACACGCAACAGTCTGCCAAGAAGAGAAGTGGGCAGTGTGCAAGTACCTCAACTGCCAAAAACTGTCACAAGAGGCATGCATTGACGCTGTTCAAAATGAGTTGATGCCGCTGCGTTTGATTGTTCAAGCACTTTTCGTGCAGCAACTCAGCACCCACCAAGCTTTCAAAGAATGCTCAGATTCATTTCGATATGTGCACTGTGGAGAGTTTTCTGGGAGTCTCTCAACCACTAGATGCCCAAACTCCAAGAGCCAGAATCTAAGGGATAGTCCCAGTCCATACACAGATGGAGATGAGCCAGCTGGTAGCAGACCCTTGAGCTTTTTGCTACAGAAGGACCTGGTAAATCAGAAACCTGAGCTGTCAAGGAAAGAATATGAGTCAACAAGCTTCAGAATTCAGAATCTTGAGCAAGAGCTCGTGTCCTTGAAGAGGAGTCTCCAATGGCAGAGCATTTCAAAAGAGCCAGTTTTAACTGCAGCACCGAGCACGAAATCATATGGTAAGGATAGTAGATCACTGAGCAAAAAGGGAAACCCACTTGGACAGACAACAGGTTGCATTGGCTCTGTGAATTTTGCTTCCCAAAGAAGGTATGCCAGTCGACTACTGAAGGTCCTTTGCCGAATTTCCTTGTTTGGAAGTAGAAAGCTAAAGAGAAAACCAGGTGCCCCCAGCCCATGGACTAAGCCACAGCAGCAGAATACTCATCAGAATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009561 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0017076 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

680

Amino Acids

76.73

Weight (kDa)

8.53

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	218 - 465	4e-65	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1985
AccB7I	CCANNNNNTGG	4 cut(s)	68, 615, 1049, 1998
AccI	GTMKAC	1 cut(s)	1921
AciI	CCGC	3 cut(s)	147, 511, 1424
AclWI	GGATC	5 cut(s)	551, 668, 675, 1143, 1202
AcsI	RAATTY	3 cut(s)	1713, 1891, 1944
AcuI	CTGAAG	2 cut(s)	1693, 1949
AfaI	GTAC	6 cut(s)	173, 456, 585, 783, 1254, 1361
AfeI	AGCGCT	1 cut(s)	398
AfiI	CCNNNNNNNGG	7 cut(s)	68, 615, 808, 1049, 1749, 1908, 1998
AgeI	ACCGGT	1 cut(s)	580
AjnI	CCWGG	3 cut(s)	250, 1656, 1981
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
Alw21I	GWGCWC	4 cut(s)	608, 1515, 1737, 1808
Alw26I	GTCTC	4 cut(s)	104, 257, 1541, 1760
Alw44I	GTGCAC	1 cut(s)	1511
AlwI	GGATC	5 cut(s)	551, 668, 675, 1143, 1202
Aor51HI	AGCGCT	1 cut(s)	398
AoxI	GGCC	1 cut(s)	257
ApaLI	GTGCAC	1 cut(s)	1511
ApeKI	GCWGC	7 cut(s)	344, 513, 1219, 1426, 1456, 1796, 2014
ApoI	RAATTY	3 cut(s)	1713, 1891, 1944
AsiGI	ACCGGT	1 cut(s)	580
Asp700I	GAANNNNTTC	1 cut(s)	1304
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	6 cut(s)	257, 486, 652, 711, 1654, 1933
AsuHPI	GGTGA	1 cut(s)	980
AvaII	GGWCC	5 cut(s)	486, 652, 711, 1654, 1933
BaeGI	GKGCMC	2 cut(s)	1515, 1990
BaeI	ACNNNNGTAYC	2 cut(s)	1098, 1131
BanI	GGYRCC	1 cut(s)	1985
BanII	GRGCYC	2 cut(s)	752, 1737
BauI	CACGAG	1 cut(s)	1736
BbsI	GAAGAC	4 cut(s)	498, 727, 800, 1035
Bbv12I	GWGCWC	4 cut(s)	608, 1515, 1737, 1808
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	7 cut(s)	356, 500, 1231, 1413, 1468, 1808, 2026
BccI	CCATC	1 cut(s)	1598
BciT130I	CCWGG	3 cut(s)	252, 1658, 1983
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	4 cut(s)	104, 257, 1541, 1760
BfaI	CTAG	5 cut(s)	356, 527, 900, 1071, 1548
BfmI	CTRYAG	4 cut(s)	1264, 1288, 1646, 1794
BfoI	RGCGCY	1 cut(s)	400
BisI	GCNGC	9 cut(s)	345, 511, 514, 1220, 1424, 1427, 1457, 1797, 2015
BlsI	GCNGC	9 cut(s)	346, 512, 515, 1221, 1425, 1428, 1458, 1798, 2016
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	3 cut(s)	252, 1658, 1983
Bme18I	GGWCC	5 cut(s)	486, 652, 711, 1654, 1933
BmgT120I	GGNCC	6 cut(s)	257, 486, 652, 711, 1654, 1933
BmiI	GGNNCC	4 cut(s)	73, 298, 712, 1987
BmrFI	CCNGG	3 cut(s)	252, 1658, 1983
BmrI	ACTGGG	1 cut(s)	1584
BmsI	GCATC	3 cut(s)	1171, 1410, 1541
BmuI	ACTGGG	1 cut(s)	1584
BpiI	GAAGAC	4 cut(s)	498, 727, 800, 1035
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	2 cut(s)	225, 1674
BpuEI	CTTGAG	5 cut(s)	65, 90, 736, 1654, 1745
BsaBI	GATNNNNATC	1 cut(s)	1185
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	5 cut(s)	250, 482, 862, 885, 1997
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	7 cut(s)	68, 615, 808, 1049, 1749, 1908, 1998
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	6 cut(s)	118, 597, 1029, 1590, 1784, 1917
Bse3DI	GCAATG	2 cut(s)	672, 1302
Bse8I	GATNNNNATC	1 cut(s)	1185
BseBI	CCWGG	3 cut(s)	252, 1658, 1983
BseDI	CCNNGG	5 cut(s)	250, 482, 862, 885, 1997
BseGI	GGATG	4 cut(s)	216, 841, 944, 1186
BseJI	GATNNNNATC	1 cut(s)	1185
BseLI	CCNNNNNNNGG	7 cut(s)	68, 615, 808, 1049, 1749, 1908, 1998
BseMI	GCAATG	2 cut(s)	672, 1302
BseMII	CTCAG	9 cut(s)	216, 234, 326, 339, 1047, 1477, 1506, 1665, 1829
BseNI	ACTGG	6 cut(s)	118, 597, 1029, 1590, 1784, 1917
BseRI	GAGGAG	2 cut(s)	289, 1765
BseSI	GKGCMC	2 cut(s)	1515, 1990
BseXI	GCAGC	7 cut(s)	356, 500, 1231, 1413, 1468, 1808, 2026
BseYI	CCCAGC	1 cut(s)	1991
BsgI	GTGCAG	3 cut(s)	363, 995, 1475
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	1985
BshTI	ACCGGT	1 cut(s)	580
BsiHKAI	GWGCWC	4 cut(s)	608, 1515, 1737, 1808
BsiSI	CCGG	1 cut(s)	581
BslFI	GGGAC	2 cut(s)	1066, 1572
BslI	CCNNNNNNNGG	7 cut(s)	68, 615, 808, 1049, 1749, 1908, 1998
BsmAI	GTCTC	4 cut(s)	104, 257, 1541, 1760
BsmFI	GGGAC	2 cut(s)	1066, 1572
BsmI	GAATGC	2 cut(s)	530, 1493
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	6 cut(s)	608, 752, 1515, 1737, 1808, 1990
Bsp143I	GATC	9 cut(s)	403, 501, 556, 660, 667, 838, 1135, 1207, 1832
Bsp19I	CCATGG	2 cut(s)	482, 1997
BspACI	CCGC	3 cut(s)	147, 511, 1424
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	9 cut(s)	217, 233, 327, 340, 1048, 1476, 1505, 1666, 1830
BspHI	TCATGA	1 cut(s)	1276
BspLI	GGNNCC	4 cut(s)	73, 298, 712, 1987
BspMAI	CTGCAG	1 cut(s)	1798
BspPI	GGATC	5 cut(s)	551, 668, 675, 1143, 1202
BspQI	GCTCTTC	1 cut(s)	984
BspT107I	GGYRCC	1 cut(s)	1985
BspTNI	GGTCTC	1 cut(s)	257
BsrDI	GCAATG	2 cut(s)	672, 1302
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	6 cut(s)	118, 597, 1029, 1590, 1784, 1917
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	5 cut(s)	250, 482, 862, 885, 1997
BssMI	GATC	9 cut(s)	403, 501, 556, 660, 667, 838, 1135, 1207, 1832
BssSI	CACGAG	1 cut(s)	1736
BssT1I	CCWWGG	4 cut(s)	482, 862, 885, 1997
Bst2BI	CACGAG	1 cut(s)	1736
Bst2UI	CCWGG	3 cut(s)	252, 1658, 1983
Bst4CI	ACNGT	3 cut(s)	1327, 1380, 1517
Bst6I	CTCTTC	5 cut(s)	61, 382, 984, 1332, 1742
BstAPI	GCANNNNNTGC	2 cut(s)	390, 522
BstC8I	GCNNGC	7 cut(s)	13, 395, 1083, 1153, 1314, 1393, 1617
BstDSI	CCRYGG	2 cut(s)	482, 1997
BstENI	CCTNNNNNAGG	1 cut(s)	1747
BstF5I	GGATG	4 cut(s)	216, 841, 944, 1186
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	9 cut(s)	406, 504, 559, 663, 670, 841, 1138, 1210, 1835
BstMAI	GTCTC	4 cut(s)	104, 257, 1541, 1760
BstMBI	GATC	9 cut(s)	403, 501, 556, 660, 667, 838, 1135, 1207, 1832
BstMWI	GCNNNNNNNGC	5 cut(s)	390, 522, 536, 905, 2014
BstNI	CCWGG	3 cut(s)	252, 1658, 1983
BstNSI	RCATGY	2 cut(s)	1219, 1395
BstSCI	CCNGG	3 cut(s)	250, 1656, 1981
BstSFI	CTRYAG	4 cut(s)	1264, 1288, 1646, 1794
BstSLI	GKGCMC	2 cut(s)	1515, 1990
BstV1I	GCAGC	7 cut(s)	356, 500, 1231, 1413, 1468, 1808, 2026
BstV2I	GAAGAC	4 cut(s)	498, 727, 800, 1035
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	1 cut(s)	259
BtgI	CCRYGG	2 cut(s)	482, 1997
BtsCI	GGATG	4 cut(s)	216, 841, 944, 1186
BtsI	GCAGTG	1 cut(s)	1356
BtsIMutI	CAGTG	4 cut(s)	590, 1356, 1513, 1835
Cac8I	GCNNGC	7 cut(s)	13, 395, 1083, 1153, 1314, 1393, 1617
CciI	TCATGA	1 cut(s)	1276
CfoI	GCGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	6 cut(s)	257, 486, 652, 711, 1654, 1933
CseI	GACGC	1 cut(s)	1409
CsiI	ACCWGGT	2 cut(s)	1656, 1981
Csp6I	GTAC	6 cut(s)	172, 455, 584, 782, 1253, 1360
CspAI	ACCGGT	1 cut(s)	580
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviQI	GTAC	6 cut(s)	172, 455, 584, 782, 1253, 1360
DpnI	GATC	9 cut(s)	405, 503, 558, 662, 669, 840, 1137, 1209, 1834
DpnII	GATC	9 cut(s)	403, 501, 556, 660, 667, 838, 1135, 1207, 1832
Eam1104I	CTCTTC	5 cut(s)	61, 382, 984, 1332, 1742
EarI	CTCTTC	5 cut(s)	61, 382, 984, 1332, 1742
Ecl136II	GAGCTC	1 cut(s)	1735
Eco130I	CCWWGG	4 cut(s)	482, 862, 885, 1997
Eco24I	GRGCYC	2 cut(s)	752, 1737
Eco31I	GGTCTC	1 cut(s)	257
Eco32I	GATATC	1 cut(s)	1260
Eco47I	GGWCC	5 cut(s)	486, 652, 711, 1654, 1933
Eco47III	AGCGCT	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	1735
Eco57I	CTGAAG	2 cut(s)	1693, 1949
EcoICRI	GAGCTC	1 cut(s)	1735
EcoNI	CCTNNNNNAGG	1 cut(s)	1747
EcoO109I	RGGNCCY	4 cut(s)	652, 711, 1654, 1933
EcoRI	GAATTC	1 cut(s)	1713
EcoRII	CCWGG	3 cut(s)	250, 1656, 1981
EcoRV	GATATC	1 cut(s)	1260
EcoT14I	CCWWGG	4 cut(s)	482, 862, 885, 1997
EcoT22I	ATGCAT	2 cut(s)	1186, 1397
EcoT38I	GRGCYC	2 cut(s)	752, 1737
ErhI	CCWWGG	4 cut(s)	482, 862, 885, 1997
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FaqI	GGGAC	2 cut(s)	1066, 1572
FauNDI	CATATG	2 cut(s)	1111, 1816
FbaI	TGATCA	1 cut(s)	838
FblI	GTMKAC	1 cut(s)	1921
Fnu4HI	GCNGC	9 cut(s)	345, 511, 514, 1220, 1424, 1427, 1457, 1797, 2015
FokI	GGATG	4 cut(s)	223, 848, 931, 1193
FriOI	GRGCYC	2 cut(s)	752, 1737
Fsp4HI	GCNGC	9 cut(s)	345, 511, 514, 1220, 1424, 1427, 1457, 1797, 2015
FspBI	CTAG	5 cut(s)	356, 527, 900, 1071, 1548
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	9 cut(s)	345, 511, 514, 1220, 1424, 1427, 1457, 1797, 2015
GsaI	CCCAGC	1 cut(s)	1995
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	581
HgaI	GACGC	1 cut(s)	1409
HhaI	GCGC	1 cut(s)	399
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	2 cut(s)	1701, 1922
HindII	GTYRAC	2 cut(s)	1701, 1922
HindIII	AAGCTT	2 cut(s)	1476, 1705
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	1 cut(s)	980
Hpy166II	GTNNAC	3 cut(s)	1513, 1701, 1922
Hpy188I	TCNGA	6 cut(s)	490, 1495, 1668, 1712, 1719, 2031
Hpy8I	GTNNAC	3 cut(s)	1513, 1701, 1922
HpyAV	CCTTC	8 cut(s)	173, 561, 628, 889, 1315, 1645, 1902, 1924
HpyCH4III	ACNGT	3 cut(s)	1327, 1380, 1517
HpyF10VI	GCNNNNNNNGC	5 cut(s)	390, 522, 536, 905, 2014
HspAI	GCGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	9 cut(s)	403, 501, 556, 660, 667, 838, 1135, 1207, 1832
LguI	GCTCTTC	1 cut(s)	984
LmnI	GCTCC	4 cut(s)	71, 302, 618, 1078
Lsp1109I	GCAGC	7 cut(s)	356, 500, 1231, 1413, 1468, 1808, 2026
LweI	GCATC	3 cut(s)	1171, 1410, 1541
MabI	ACCWGGT	2 cut(s)	1656, 1981
MaeI	CTAG	5 cut(s)	356, 527, 900, 1071, 1548
MaeIII	GTNAC	3 cut(s)	572, 821, 1380
MalI	GATC	9 cut(s)	405, 503, 558, 662, 669, 840, 1137, 1209, 1834
MboI	GATC	9 cut(s)	403, 501, 556, 660, 667, 838, 1135, 1207, 1832
MfeI	CAATTG	1 cut(s)	1161
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	6 cut(s)	608, 752, 1515, 1737, 1808, 1990
MlyI	GAGTC	7 cut(s)	97, 212, 655, 1067, 1543, 1706, 1762
MmeI	TCCRAC	3 cut(s)	49, 416, 966
Mph1103I	ATGCAT	2 cut(s)	1186, 1397
MroXI	GAANNNNTTC	1 cut(s)	1304
MseI	TTAA	5 cut(s)	87, 159, 413, 449, 1790
MslI	CAYNNNNRTG	1 cut(s)	1275
MspA1I	CMGCKG	5 cut(s)	224, 347, 513, 1426, 1619
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	3 cut(s)	252, 1658, 1983
MunI	CAATTG	1 cut(s)	1161
Mva1269I	GAATGC	2 cut(s)	530, 1493
MvaI	CCWGG	3 cut(s)	252, 1658, 1983
MwoI	GCNNNNNNNGC	5 cut(s)	390, 522, 536, 905, 2014
NcoI	CCATGG	2 cut(s)	482, 1997
NdeI	CATATG	2 cut(s)	1111, 1816
NdeII	GATC	9 cut(s)	403, 501, 556, 660, 667, 838, 1135, 1207, 1832
NlaIV	GGNNCC	4 cut(s)	73, 298, 712, 1987
NmuCI	GTSAC	3 cut(s)	572, 821, 1380
NsiI	ATGCAT	2 cut(s)	1186, 1397
NspI	RCATGY	2 cut(s)	1219, 1395
PaeI	GCATGC	1 cut(s)	1395
PagI	TCATGA	1 cut(s)	1276
PciSI	GCTCTTC	1 cut(s)	984
PctI	GAATGC	2 cut(s)	530, 1493
PdmI	GAANNNNTTC	1 cut(s)	1304
PfeI	GAWTC	6 cut(s)	550, 690, 1230, 1496, 1573, 1720
PflFI	GACNNNGTC	1 cut(s)	1057
PflMI	CCANNNNNTGG	4 cut(s)	68, 615, 1049, 1998
PinAI	ACCGGT	1 cut(s)	580
PkrI	GCNGC	9 cut(s)	346, 512, 515, 1221, 1425, 1428, 1458, 1798, 2016
PleI	GAGTC	7 cut(s)	97, 212, 654, 1066, 1542, 1705, 1761
PpsI	GAGTC	7 cut(s)	97, 212, 654, 1066, 1542, 1705, 1761
PpuMI	RGGWCCY	4 cut(s)	652, 711, 1654, 1933
Psp124BI	GAGCTC	1 cut(s)	1737
Psp5II	RGGWCCY	4 cut(s)	652, 711, 1654, 1933
Psp6I	CCWGG	3 cut(s)	250, 1656, 1981
PspFI	CCCAGC	1 cut(s)	1991
PspGI	CCWGG	3 cut(s)	250, 1656, 1981
PspN4I	GGNNCC	4 cut(s)	73, 298, 712, 1987
PspPI	GGNCC	6 cut(s)	257, 486, 652, 711, 1654, 1933
PspPPI	RGGWCCY	4 cut(s)	652, 711, 1654, 1933
PstI	CTGCAG	1 cut(s)	1798
PsuI	RGATCY	1 cut(s)	667
PsyI	GACNNNGTC	1 cut(s)	1057
PvuII	CAGCTG	3 cut(s)	224, 347, 1619
RsaI	GTAC	6 cut(s)	173, 456, 585, 783, 1254, 1361
RsaNI	GTAC	6 cut(s)	172, 455, 584, 782, 1253, 1360
RseI	CAYNNNNRTG	1 cut(s)	1275
SacI	GAGCTC	1 cut(s)	1737
SalI	GTCGAC	1 cut(s)	1920
SapI	GCTCTTC	1 cut(s)	984
SaqAI	TTAA	5 cut(s)	87, 159, 413, 449, 1790
SatI	GCNGC	9 cut(s)	345, 511, 514, 1220, 1424, 1427, 1457, 1797, 2015
Sau3AI	GATC	9 cut(s)	403, 501, 556, 660, 667, 838, 1135, 1207, 1832
Sau96I	GGNCC	6 cut(s)	257, 486, 652, 711, 1654, 1933
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	7 cut(s)	97, 212, 655, 1067, 1543, 1706, 1762
ScrFI	CCNGG	3 cut(s)	252, 1658, 1983
SduI	GDGCHC	6 cut(s)	608, 752, 1515, 1737, 1808, 1990
SexAI	ACCWGGT	2 cut(s)	1656, 1981
SfaNI	GCATC	3 cut(s)	1171, 1410, 1541
SfcI	CTRYAG	4 cut(s)	1264, 1288, 1646, 1794
SinI	GGWCC	5 cut(s)	486, 652, 711, 1654, 1933
SmiMI	CAYNNNNRTG	1 cut(s)	1275
SmlI	CTYRAG	5 cut(s)	80, 105, 715, 1633, 1724
SmoI	CTYRAG	5 cut(s)	80, 105, 715, 1633, 1724
SphI	GCATGC	1 cut(s)	1395
SsiI	CCGC	3 cut(s)	147, 511, 1424
SspI	AATATT	1 cut(s)	180
SspMI	CTAG	5 cut(s)	356, 527, 900, 1071, 1548
SstI	GAGCTC	1 cut(s)	1737
StyD4I	CCNGG	3 cut(s)	250, 1656, 1981
StyI	CCWWGG	4 cut(s)	482, 862, 885, 1997
TaaI	ACNGT	3 cut(s)	1327, 1380, 1517
TaqI	TCGA	5 cut(s)	139, 904, 1245, 1504, 1921
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	2 cut(s)	513, 1426
TfiI	GAWTC	6 cut(s)	550, 690, 1230, 1496, 1573, 1720
Tru1I	TTAA	5 cut(s)	87, 159, 413, 449, 1790
Tru9I	TTAA	5 cut(s)	87, 159, 413, 449, 1790
TscAI	CASTG	4 cut(s)	597, 1356, 1520, 1842
TseFI	GTSAC	3 cut(s)	572, 821, 1380
TseI	GCWGC	7 cut(s)	344, 513, 1219, 1426, 1456, 1796, 2014
Tsp45I	GTSAC	3 cut(s)	572, 821, 1380
TspDTI	ATGAA	7 cut(s)	87, 227, 523, 746, 1222, 1313, 1488
TspRI	CASTG	4 cut(s)	597, 1356, 1520, 1842
Tth111I	GACNNNGTC	1 cut(s)	1057
Van91I	CCANNNNNTGG	4 cut(s)	68, 615, 1049, 1998
VneI	GTGCAC	1 cut(s)	1511
VpaK11BI	GGWCC	5 cut(s)	486, 652, 711, 1654, 1933
XagI	CCTNNNNNAGG	1 cut(s)	1747
XapI	RAATTY	3 cut(s)	1713, 1891, 1944
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	2 cut(s)	1219, 1395
XmiI	GTMKAC	1 cut(s)	1921
XmnI	GAANNNNTTC	1 cut(s)	1304
XspI	CTAG	5 cut(s)	356, 527, 900, 1071, 1548
ZrmI	AGTACT	1 cut(s)	456
Zsp2I	ATGCAT	2 cut(s)	1186, 1397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.