Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005767.1

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

104690 .. 108409

Gene Structure 3720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005767.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgcgtgaagatattttagatcagcaggcatcacttcagcgagctagacttgaagcttctcttgctgatggcatctcttggggtatgggagaggatgccattatagaagaagctgaggatgatggtgaggaagtaacttggcaaacatacaaaggacagctttcggaaaagcagataaaaacccgtgataaaataacgaaaagaatggaaaagattgctcatatgaagaaagagatagatgctatttgtgctaaagacgtctctcaatgtggactgactcaagggcaacaaactcagatcgcgcgaaatgaacaaagaacagaacagattctggaagagcttgaaaatttggaagagactctgaatgagagtattcaagaaagtttacgtgcacatgttgggaagctatctcatggtaagaacaaaggagcaattgaagaagaagaagaagaacttttgagagaattgcagcagcacattttggaacttgctgatattcttgtggagagaccatcacaatatgcaaggagagtggaagaaatatctcttatgttcaagaacttgcatcatcttctgaactcattgcagccccatcaggctagggcaacactagttcacattctagaacttcatatcaaacgacgtaaacaagctgtggaggatgtaaagagaactttgcttattgatctcaaggtgtcatttgagttggtgccaacaggttgcatgtttctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

244

Amino Acids

28.12

Weight (kDa)

5.25

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	709
AccII	CGCG	2 cut(s)	302, 304
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	258
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	5 cut(s)	53, 344, 377, 437, 556
AhlI	ACTAGT	1 cut(s)	610
AluBI	AGCT	7 cut(s)	44, 56, 113, 160, 340, 406, 653
AluI	AGCT	7 cut(s)	44, 56, 113, 160, 340, 406, 653
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	3 cut(s)	265, 350, 502
Alw44I	GTGCAC	1 cut(s)	390
AlwNI	CAGNNNCTG	1 cut(s)	331
ApaLI	GTGCAC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	469, 472, 586
ApoI	RAATTY	1 cut(s)	346
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	481, 484, 598
BccI	CCATC	4 cut(s)	62, 116, 520, 600
BcoDI	GTCTC	3 cut(s)	265, 350, 502
BcuI	ACTAGT	1 cut(s)	610
BfaI	CTAG	4 cut(s)	45, 600, 611, 623
BisI	GCNGC	3 cut(s)	470, 473, 587
BlsI	GCNGC	3 cut(s)	471, 474, 588
BmiI	GGNNCC	1 cut(s)	711
BmsI	GCATC	5 cut(s)	38, 81, 85, 229, 574
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	264, 674
BsaAI	YACGTR	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	581
BseGI	GGATG	3 cut(s)	100, 124, 667
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	2 cut(s)	105, 308
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	3 cut(s)	481, 484, 598
Bsh1236I	CGCG	2 cut(s)	302, 304
BshNI	GGYRCC	1 cut(s)	709
BsiHKAI	GWGCWC	1 cut(s)	394
BsmAI	GTCTC	3 cut(s)	265, 350, 502
BsmBI	CGTCTC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	19, 297, 685
BspCNI	CTCAG	2 cut(s)	106, 307
BspFNI	CGCG	2 cut(s)	302, 304
BspLI	GGNNCC	1 cut(s)	711
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	709
BspTNI	GGTCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	581
BssMI	GATC	3 cut(s)	19, 297, 685
BssNI	GRCGYC	1 cut(s)	258
Bst6I	CTCTTC	2 cut(s)	330, 348
BstACI	GRCGYC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	27, 42
BstDEI	CTNAG	2 cut(s)	114, 294
BstF5I	GGATG	3 cut(s)	100, 124, 667
BstFNI	CGCG	2 cut(s)	302, 304
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	22, 300, 688
BstMAI	GTCTC	3 cut(s)	265, 350, 502
BstMBI	GATC	3 cut(s)	19, 297, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 248
BstNSI	RCATGY	2 cut(s)	398, 727
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	2 cut(s)	302, 304
BstV1I	GCAGC	3 cut(s)	481, 484, 598
BtsCI	GGATG	3 cut(s)	100, 124, 667
Cac8I	GCNNGC	2 cut(s)	27, 42
CaiI	CAGNNNCTG	1 cut(s)	331
CfoI	GCGC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviAII	CATG	3 cut(s)	395, 413, 724
CviJI	RGCY	9 cut(s)	44, 56, 113, 160, 340, 406, 589, 599, 653
CviKI_1	RGCY	9 cut(s)	44, 56, 113, 160, 340, 406, 589, 599, 653
DdeI	CTNAG	2 cut(s)	114, 294
DpnI	GATC	3 cut(s)	21, 299, 687
DpnII	GATC	3 cut(s)	19, 297, 685
Eam1104I	CTCTTC	2 cut(s)	330, 348
EarI	CTCTTC	2 cut(s)	330, 348
Eco31I	GGTCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	3 cut(s)	398, 416, 727
FalI	AAGNNNNNCTT	6 cut(s)	45, 77, 144, 176, 438, 470
FatI	CATG	3 cut(s)	394, 412, 723
FauNDI	CATATG	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	470, 473, 587
FokI	GGATG	3 cut(s)	107, 131, 674
Fsp4HI	GCNGC	3 cut(s)	470, 473, 587
FspBI	CTAG	4 cut(s)	45, 600, 611, 623
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	470, 473, 587
HhaI	GCGC	1 cut(s)	304
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	398, 416, 727
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	3 cut(s)	277, 328, 358
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	5 cut(s)	272, 386, 392, 616, 647
Hpy188I	TCNGA	4 cut(s)	166, 297, 363, 576
Hpy188III	TCNNGA	4 cut(s)	332, 377, 556, 623
Hpy8I	GTNNAC	5 cut(s)	272, 386, 392, 616, 647
Hpy99I	CGWCG	1 cut(s)	645
HpyCH4IV	ACGT	3 cut(s)	258, 388, 643
HpyCH4V	TGCA	6 cut(s)	392, 469, 524, 565, 586, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 248
HpyF3I	CTNAG	2 cut(s)	114, 294
HpySE526I	ACGT	3 cut(s)	258, 388, 643
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	398, 416, 727
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	3 cut(s)	19, 297, 685
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	4 cut(s)	11, 317, 581, 702
Lsp1109I	GCAGC	3 cut(s)	481, 484, 598
LweI	GCATC	5 cut(s)	38, 81, 85, 229, 574
MaeI	CTAG	4 cut(s)	45, 600, 611, 623
MaeII	ACGT	3 cut(s)	258, 388, 643
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	21, 299, 687
MboI	GATC	3 cut(s)	19, 297, 685
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	3 cut(s)	346, 432, 464
MlyI	GAGTC	2 cut(s)	271, 352
MnlI	CCTC	4 cut(s)	85, 109, 121, 652
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	1 cut(s)	733
MunI	CAATTG	1 cut(s)	432
MvnI	CGCG	2 cut(s)	302, 304
MwoI	GCNNNNNNNGC	2 cut(s)	62, 248
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	3 cut(s)	19, 297, 685
NlaIII	CATG	3 cut(s)	398, 416, 727
NlaIV	GGNNCC	1 cut(s)	711
NspI	RCATGY	2 cut(s)	398, 727
PciI	ACATGT	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	3 cut(s)	471, 474, 588
PleI	GAGTC	2 cut(s)	271, 352
PpsI	GAGTC	2 cut(s)	271, 352
Ppu21I	YACGTR	1 cut(s)	389
PscI	ACATGT	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	711
PstNI	CAGNNNCTG	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	733
SatI	GCNGC	3 cut(s)	470, 473, 587
Sau3AI	GATC	3 cut(s)	19, 297, 685
SchI	GAGTC	2 cut(s)	271, 352
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	5 cut(s)	38, 81, 85, 229, 574
SmlI	CTYRAG	2 cut(s)	279, 689
SmoI	CTYRAG	2 cut(s)	279, 689
SpeI	ACTAGT	1 cut(s)	610
Sse9I	AATT	3 cut(s)	346, 432, 464
SspMI	CTAG	4 cut(s)	45, 600, 611, 623
TaiI	ACGT	3 cut(s)	261, 391, 646
TasI	AATT	3 cut(s)	346, 432, 464
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	733
Tru9I	TTAA	1 cut(s)	733
TseI	GCWGC	3 cut(s)	469, 472, 586
TspDTI	ATGAA	3 cut(s)	239, 324, 620
VneI	GTGCAC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	346
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	2 cut(s)	398, 727
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	4 cut(s)	45, 600, 611, 623
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.