Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Forward (+)

83048344 .. 83050147

Gene Structure 1804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG598300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCAGCTGTTGTTCATGCTGTGCAACATATACCCAAAGGAGCTGAGAGCGAGATAGATGCTATTCGTGCTAAAGACATCCCTCAACGTGGATTGACTCAAGGGCAAGAAACTCAGATCGCTCGAAATGAACAGAGAACAGAACAGATCCTGGAAGAGCTTGACATTTTGGAAGAGACCCTGAATGAGAGAATTCGAGAAAGTTTAGGTGCACGTGTAGGGAAGCAATCTCTTGGTAAGAAGAAAGGAGCAATTGAAGAAGAAGAACTTTTGAGGTATTTTATTAATGAAAATTACCCGTGTGAAAGTTTTGCACTTTTGGGTTTGGAAGAGACACTCAAGTACTCATTTTTCCAAGGATTGAACTATATAAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

126

Amino Acids

14.38

Weight (kDa)

5.04

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	379
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	257, 364
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	8, 44, 160
AluI	AGCT	3 cut(s)	8, 44, 160
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	170, 326
Alw44I	GTGCAC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	151
ApaLI	GTGCAC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	192
AseI	ATTAAT	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	214
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	170, 326
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	49
BpuEI	CTTGAG	2 cut(s)	84, 323
BsaAI	YACGTR	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	36, 128
BseSI	GKGCMC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	170, 326
Bso31I	GGTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	117, 147
BspCNI	CTCAG	2 cut(s)	37, 127
BspPI	GGATC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	117, 147
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	152
Bst6I	CTCTTC	3 cut(s)	150, 168, 324
BstBAI	YACGTR	1 cut(s)	215
BstDEI	CTNAG	2 cut(s)	45, 114
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	120, 150
BstMAI	GTCTC	2 cut(s)	170, 326
BstMBI	GATC	2 cut(s)	117, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	3 cut(s)	8, 44, 160
CviKI_1	RGCY	3 cut(s)	8, 44, 160
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	45, 114
DpnI	GATC	2 cut(s)	119, 149
DpnII	GATC	2 cut(s)	117, 147
Eam1104I	CTCTTC	3 cut(s)	150, 168, 324
EarI	CTCTTC	3 cut(s)	150, 168, 324
Eco130I	CCWWGG	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	20
FaiI	YATR	6 cut(s)	18, 30, 32, 369, 371, 379
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	1 cut(s)	16
FokI	GGATG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	20
HinfI	GANTC	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	212
HpyCH4IV	ACGT	2 cut(s)	88, 214
HpyCH4V	TGCA	3 cut(s)	25, 212, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	45, 114
HpySE526I	ACGT	2 cut(s)	88, 214
Hsp92II	CATG	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	117, 147
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	41, 248
LpnPI	CCDG	3 cut(s)	137, 164, 194
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	2 cut(s)	88, 214
MalI	GATC	2 cut(s)	119, 149
MboI	GATC	2 cut(s)	117, 147
MboII	GAAGA	7 cut(s)	167, 185, 253, 269, 272, 275, 341
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	192, 252, 292
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	2 cut(s)	93, 267
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	2 cut(s)	117, 147
NlaIII	CATG	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	150
PfoI	TCCNGGA	1 cut(s)	150
PleI	GAGTC	1 cut(s)	91
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	150
PspCI	CACGTG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	117, 147
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	7 cut(s)	10, 46, 91, 162, 211, 217, 278
SfaNI	GCATC	1 cut(s)	49
SmlI	CTYRAG	2 cut(s)	99, 338
SmoI	CTYRAG	2 cut(s)	99, 338
Sse9I	AATT	3 cut(s)	192, 252, 292
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	355
TaiI	ACGT	2 cut(s)	91, 217
TaqI	TCGA	2 cut(s)	124, 196
TasI	AATT	3 cut(s)	192, 252, 292
TatI	WGTACW	1 cut(s)	342
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TspDTI	ATGAA	3 cut(s)	5, 144, 303
VneI	GTGCAC	1 cut(s)	210
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.