Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

26361000 .. 26390742

Gene Structure 29743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCACGGCTAGAACTTGCAAGAAGCGAAAACCTGAAACTCAAGAGCAAACCAGTGAGAAACGAAATTGTGGAGAATAATGTGTCACCCCTGAAACGTCTAATACACAAGAGCCAAGTAGTAGAGGAACAATTTTGGCGGAGCTCAGCTCACTTGATTAGCAGGGGACGAGACCCTTTGCTAGCACTTCTTGTATCCAATCAACCTAGACACTCTGCATTACTAAGAAGGAATCGAGGCCTGAAATTGAAGTTTTTACGTCGAAAATTGAGCTCACCGGTTTCTGCAAATTTCCGCCGGATTCTGGAAAATTCCGGCCACCTTCATACTGTTCAAGGCCTGAAATTGAAGTTTTTACGTCGAAAATTGAGCTCACCGGTTTCTGCAAATTTCGCCGGATTACGGAAAATTCGGCCACCTTCATACTTGTTCAAGAGTTTTGATTGGTTGGATGACACACCAGGGCTTACATGGCGCTACCAGCTTCGTTGGAGCTGTGGCTCCACAGGGCTCACCTGCCTTCGATCTCAGGATTCTGTCAAGGAAGCTGCACACGCTCAACACGCTGCAAAGGCCTTTGCCGGTGATCTGTGTCCTGGTGGCAGCGTTACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

23.23

Weight (kDa)

11.08

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	524
AciI	CCGC	2 cut(s)	139, 295
AcoI	YGGCCR	2 cut(s)	316, 413
AcsI	RAATTY	4 cut(s)	289, 310, 388, 408
AfiI	CCNNNNNNNGG	2 cut(s)	304, 402
AgeI	ACCGGT	2 cut(s)	277, 376
AgsI	TTSAA	4 cut(s)	250, 335, 349, 433
AjnI	CCWGG	2 cut(s)	460, 595
AluBI	AGCT	7 cut(s)	144, 149, 273, 372, 484, 495, 548
AluI	AGCT	7 cut(s)	144, 149, 273, 372, 484, 495, 548
Alw21I	GWGCWC	3 cut(s)	146, 275, 374
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	5 cut(s)	238, 316, 337, 413, 573
ApeKI	GCWGC	3 cut(s)	548, 566, 603
ApoI	RAATTY	4 cut(s)	289, 310, 388, 408
AsiGI	ACCGGT	2 cut(s)	277, 376
AspLEI	GCGC	1 cut(s)	477
AsuHPI	GGTGA	5 cut(s)	78, 267, 366, 505, 596
AsuNHI	GCTAGC	1 cut(s)	181
BanII	GRGCYC	4 cut(s)	146, 275, 374, 513
Bbv12I	GWGCWC	3 cut(s)	146, 275, 374
BbvI	GCAGC	2 cut(s)	535, 553
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	462, 597
BciVI	GTATCC	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	4 cut(s)	11, 182, 207, 616
BfoI	RGCGCY	1 cut(s)	478
BfuAI	ACCTGC	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	549, 567, 604
BlpI	GCTNAGC	1 cut(s)	145
BlsI	GCNGC	3 cut(s)	550, 568, 605
Bme1390I	CCNGG	2 cut(s)	462, 597
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	2 cut(s)	462, 597
BmtI	GCTAGC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
Bpu1102I	GCTNAGC	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	461
BsaWI	WCCGGW	2 cut(s)	277, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 402
Bse118I	RCCGGY	3 cut(s)	277, 376, 581
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	462, 597
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	304, 402
BseMII	CTCAG	2 cut(s)	159, 542
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	535, 553
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	5 cut(s)	240, 318, 339, 415, 575
BshTI	ACCGGT	2 cut(s)	277, 376
BsiHKAI	GWGCWC	3 cut(s)	146, 275, 374
BsiSI	CCGG	6 cut(s)	278, 298, 315, 377, 396, 582
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	304, 402
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	5 cut(s)	240, 318, 339, 415, 575
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	4 cut(s)	146, 275, 374, 513
Bsp143I	GATC	2 cut(s)	524, 586
Bsp1720I	GCTNAGC	1 cut(s)	145
BspACI	CCGC	2 cut(s)	139, 295
BspANI	GGCC	5 cut(s)	240, 318, 339, 415, 575
BspCNI	CTCAG	2 cut(s)	158, 541
BspLI	GGNNCC	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	524
BspOI	GCTAGC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	165
BsrFI	RCCGGY	3 cut(s)	277, 376, 581
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	3 cut(s)	277, 376, 581
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	2 cut(s)	524, 586
Bst2UI	CCWGG	2 cut(s)	462, 597
Bst4CI	ACNGT	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	145, 224, 528
BstF5I	GGATG	1 cut(s)	457
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	2 cut(s)	527, 589
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	524, 586
BstMWI	GCNNNNNNNGC	6 cut(s)	392, 472, 481, 554, 563, 572
BstNI	CCWGG	2 cut(s)	462, 597
BstSCI	CCNGG	2 cut(s)	460, 595
BstV1I	GCAGC	2 cut(s)	535, 553
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	5 cut(s)	240, 318, 339, 415, 575
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	477
Cfr10I	RCCGGY	3 cut(s)	277, 376, 581
CspAI	ACCGGT	2 cut(s)	277, 376
CviAII	CATG	1 cut(s)	471
DdeI	CTNAG	3 cut(s)	145, 224, 528
DpnI	GATC	2 cut(s)	526, 588
DpnII	GATC	2 cut(s)	524, 586
EaeI	YGGCCR	2 cut(s)	316, 413
EciI	GGCGGA	2 cut(s)	154, 284
Ecl136II	GAGCTC	3 cut(s)	144, 273, 372
Eco147I	AGGCCT	3 cut(s)	240, 339, 575
Eco24I	GRGCYC	4 cut(s)	146, 275, 374, 513
Eco31I	GGTCTC	1 cut(s)	165
Eco53kI	GAGCTC	3 cut(s)	144, 273, 372
EcoICRI	GAGCTC	3 cut(s)	144, 273, 372
EcoRII	CCWGG	2 cut(s)	460, 595
EcoT38I	GRGCYC	4 cut(s)	146, 275, 374, 513
FaeI	CATG	1 cut(s)	474
FaiI	YATR	3 cut(s)	327, 424, 472
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	470
Fnu4HI	GCNGC	3 cut(s)	549, 567, 604
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	4 cut(s)	146, 275, 374, 513
Fsp4HI	GCNGC	3 cut(s)	549, 567, 604
FspBI	CTAG	4 cut(s)	11, 182, 207, 616
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	3 cut(s)	549, 567, 604
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	5 cut(s)	240, 318, 339, 415, 575
HapII	CCGG	6 cut(s)	278, 298, 315, 377, 396, 582
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	1 cut(s)	474
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HinfI	GANTC	3 cut(s)	232, 301, 533
HpaII	CCGG	6 cut(s)	278, 298, 315, 377, 396, 582
HphI	GGTGA	5 cut(s)	78, 267, 366, 505, 596
Hpy188III	TCNNGA	4 cut(s)	43, 305, 433, 530
Hpy99I	CGWCG	2 cut(s)	264, 363
HpyAV	CCTTC	4 cut(s)	222, 332, 429, 530
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	3 cut(s)	97, 259, 358
HpyCH4V	TGCA	6 cut(s)	20, 218, 287, 386, 551, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	392, 472, 481, 554, 563, 572
HpyF3I	CTNAG	3 cut(s)	145, 224, 528
HpySE526I	ACGT	3 cut(s)	97, 259, 358
Hsp92II	CATG	1 cut(s)	474
HspAI	GCGC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	524, 586
LmnI	GCTCC	3 cut(s)	141, 492, 506
Lsp1109I	GCAGC	2 cut(s)	535, 553
MaeI	CTAG	4 cut(s)	11, 182, 207, 616
MaeII	ACGT	3 cut(s)	97, 259, 358
MaeIII	GTNAC	2 cut(s)	84, 607
MalI	GATC	2 cut(s)	526, 588
MboI	GATC	2 cut(s)	524, 586
MhlI	GDGCHC	4 cut(s)	146, 275, 374, 513
MmeI	TCCRAC	2 cut(s)	429, 470
MnlI	CCTC	2 cut(s)	118, 230
MspI	CCGG	6 cut(s)	278, 298, 315, 377, 396, 582
MspR9I	CCNGG	2 cut(s)	462, 597
MvaI	CCWGG	2 cut(s)	462, 597
MwoI	GCNNNNNNNGC	6 cut(s)	392, 472, 481, 554, 563, 572
NdeII	GATC	2 cut(s)	524, 586
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	474
NlaIV	GGNNCC	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	524
PceI	AGGCCT	3 cut(s)	240, 339, 575
PfeI	GAWTC	3 cut(s)	232, 301, 533
PinAI	ACCGGT	2 cut(s)	277, 376
PkrI	GCNGC	3 cut(s)	550, 568, 605
Psp124BI	GAGCTC	3 cut(s)	146, 275, 374
Psp6I	CCWGG	2 cut(s)	460, 595
PspGI	CCWGG	2 cut(s)	460, 595
PspN4I	GGNNCC	1 cut(s)	502
SacI	GAGCTC	3 cut(s)	146, 275, 374
SatI	GCNGC	3 cut(s)	549, 567, 604
Sau3AI	GATC	2 cut(s)	524, 586
ScrFI	CCNGG	2 cut(s)	462, 597
SduI	GDGCHC	4 cut(s)	146, 275, 374, 513
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SseBI	AGGCCT	3 cut(s)	240, 339, 575
SsiI	CCGC	2 cut(s)	139, 295
SspMI	CTAG	4 cut(s)	11, 182, 207, 616
SstI	GAGCTC	3 cut(s)	146, 275, 374
StuI	AGGCCT	3 cut(s)	240, 339, 575
StyD4I	CCNGG	2 cut(s)	460, 595
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	3 cut(s)	100, 262, 361
TaqI	TCGA	4 cut(s)	235, 262, 361, 523
TfiI	GAWTC	3 cut(s)	232, 301, 533
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	3 cut(s)	548, 566, 603
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	314, 411
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	1 cut(s)	60
XapI	RAATTY	4 cut(s)	289, 310, 388, 408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XspI	CTAG	4 cut(s)	11, 182, 207, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.