Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

22112092 .. 22112571

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAACTCCCCTCAACCTGCTGATCATCATACTAGGAGGATTGCACATAGAGTGACCGGTTTCACGTTCGTCGGAGCTCGAAGGAATCGAGGATTGAAAATGAATTTTTTACGTCGAAAATTGAGCTCGCCGGTTTCTGGAAATTTTCCGGCCACCTTCATACTGTTCAAGGTAATTTTCGACCCCTTCCGGTCATTTTCAGACTTCGTGCTAGTTATGAAAATTATTGGGCTTGATGAGAGGAAGAGGAGCAGCCAGGCCCCGACACCATTGGCGGTGGTCGGCGGCGGCTCTGCCTCTTTTCCGGCGGCCATTTTCCGGCCACCTCCGGGGGTCAAAAATGTGATTTCTTTACAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

12.0

Isoelectric Point (pI)

67.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AciI	CCGC	4 cut(s)	275, 285, 288, 308
AcoI	YGGCCR	3 cut(s)	150, 309, 320
AcsI	RAATTY	2 cut(s)	103, 142
AfiI	CCNNNNNNNGG	3 cut(s)	137, 318, 329
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	97, 169
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	77, 126
AluI	AGCT	2 cut(s)	77, 126
Alw21I	GWGCWC	2 cut(s)	79, 128
AoxI	GGCC	4 cut(s)	150, 258, 309, 320
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	103, 142
AsiGI	ACCGGT	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	330
BanII	GRGCYC	2 cut(s)	79, 128
Bbv12I	GWGCWC	2 cut(s)	79, 128
BbvI	GCAGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	330
BfaI	CTAG	2 cut(s)	33, 212
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	4 cut(s)	253, 286, 289, 309
BlsI	GCNGC	4 cut(s)	254, 287, 290, 310
Bme1390I	CCNGG	2 cut(s)	257, 330
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	257, 330
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	329
BsaWI	WCCGGW	2 cut(s)	56, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 318, 329
Bse118I	RCCGGY	2 cut(s)	56, 130
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	329
BseLI	CCNNNNNNNGG	3 cut(s)	137, 318, 329
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	264
BshFI	GGCC	4 cut(s)	152, 260, 311, 322
BshTI	ACCGGT	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	79, 128
BsiSI	CCGG	7 cut(s)	57, 131, 149, 190, 305, 319, 329
BslI	CCNNNNNNNGG	3 cut(s)	137, 318, 329
BsnI	GGCC	4 cut(s)	152, 260, 311, 322
Bsp1286I	GDGCHC	2 cut(s)	79, 128
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	4 cut(s)	275, 285, 288, 308
BspANI	GGCC	4 cut(s)	152, 260, 311, 322
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	56, 130
BssAI	RCCGGY	2 cut(s)	56, 130
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	165, 357
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	255, 328
BstV1I	GCAGC	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	152, 260, 311, 322
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	128
Cfr10I	RCCGGY	2 cut(s)	56, 130
Cfr13I	GGNCC	1 cut(s)	259
CspAI	ACCGGT	1 cut(s)	56
CviJI	RGCY	9 cut(s)	77, 126, 152, 232, 255, 260, 291, 311, 322
CviKI_1	RGCY	9 cut(s)	77, 126, 152, 232, 255, 260, 291, 311, 322
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	3 cut(s)	150, 309, 320
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Ecl136II	GAGCTC	2 cut(s)	77, 126
Eco24I	GRGCYC	2 cut(s)	79, 128
Eco53kI	GAGCTC	2 cut(s)	77, 126
EcoICRI	GAGCTC	2 cut(s)	77, 126
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	255
EcoT38I	GRGCYC	2 cut(s)	79, 128
FaiI	YATR	4 cut(s)	30, 48, 161, 218
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	253, 286, 289, 309
FriOI	GRGCYC	2 cut(s)	79, 128
Fsp4HI	GCNGC	4 cut(s)	253, 286, 289, 309
FspBI	CTAG	2 cut(s)	33, 212
GluI	GCNGC	4 cut(s)	253, 286, 289, 309
HaeIII	GGCC	4 cut(s)	152, 260, 311, 322
HapII	CCGG	7 cut(s)	57, 131, 149, 190, 305, 319, 329
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	7 cut(s)	57, 131, 149, 190, 305, 319, 329
Hpy188I	TCNGA	2 cut(s)	74, 202
Hpy188III	TCNNGA	1 cut(s)	138
Hpy99I	CGWCG	2 cut(s)	74, 117
HpyAV	CCTTC	3 cut(s)	75, 166, 196
HpyCH4III	ACNGT	2 cut(s)	165, 357
HpyCH4IV	ACGT	2 cut(s)	65, 112
HpyCH4V	TGCA	1 cut(s)	44
HpySE526I	ACGT	2 cut(s)	65, 112
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	74, 249
Lsp1109I	GCAGC	1 cut(s)	264
MaeI	CTAG	2 cut(s)	33, 212
MaeII	ACGT	2 cut(s)	65, 112
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	79, 128
MluCI	AATT	5 cut(s)	103, 119, 142, 174, 222
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	7 cut(s)	21, 30, 83, 234, 240, 307, 336
MspI	CCGG	7 cut(s)	57, 131, 149, 190, 305, 319, 329
MspR9I	CCNGG	2 cut(s)	257, 330
MvaI	CCWGG	1 cut(s)	257
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	85
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	4 cut(s)	254, 287, 290, 310
Psp124BI	GAGCTC	2 cut(s)	79, 128
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	259
SacI	GAGCTC	2 cut(s)	79, 128
SatI	GCNGC	4 cut(s)	253, 286, 289, 309
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	257, 330
SduI	GDGCHC	2 cut(s)	79, 128
SetI	ASST	8 cut(s)	19, 68, 79, 115, 128, 158, 174, 328
Sse9I	AATT	5 cut(s)	103, 119, 142, 174, 222
SsiI	CCGC	4 cut(s)	275, 285, 288, 308
SspMI	CTAG	2 cut(s)	33, 212
SstI	GAGCTC	2 cut(s)	79, 128
StyD4I	CCNGG	2 cut(s)	255, 328
TaaI	ACNGT	2 cut(s)	165, 357
TaiI	ACGT	2 cut(s)	68, 115
TaqI	TCGA	4 cut(s)	79, 88, 115, 180
TasI	AATT	5 cut(s)	103, 119, 142, 174, 222
TauI	GCSGC	3 cut(s)	288, 291, 311
TfiI	GAWTC	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	4 cut(s)	17, 116, 148, 233
XapI	RAATTY	2 cut(s)	103, 142
XspI	CTAG	2 cut(s)	33, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.