Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

8669417 .. 8676125

Gene Structure 6709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCACCGTTCAAATCCTGCCACCTCAATCTTTGAAGGCTACTTGAAGGCTGAGGGTTTGTGTGGAATGGATGCGGATGCTGAATGGAAAATAATAGATCAAATCATAAAGGCTGAAGTCACTTGTGGAACTGAAACTGATTGGGTACAGGACTCTATCCTGTCATATCAATCATTAACCACAGCTGCTTGCCGAATTCTGTTCTACTATTTGAGGGAATGTCAGCTGTTGTTCTGTGCTGTGCAACATATACCCAAAGGAGCTGAGATCCTGGAAGAGCTTGACATTTTGGAAGAGACCCTGAATGAGAGAATTCGAGAAAGTTTAGGTGCACGTGTAGGGAAGCAATCTCTTGGTAAGAAGAAAGGAGCAATTGAAGAAGAAGAACTTTTGAGTGATGATGATGAATTTTATGATCGAGCAAAGAAGCCTTCTAGCACAATGGCAAGTGAAAACCAATCAATTGAAACCGCTGATACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

161

Amino Acids

18.09

Weight (kDa)

4.52

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 471
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	3 cut(s)	195, 312, 407
AcuI	CTGAAG	1 cut(s)	135
AcvI	CACGTG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	12, 35, 46, 377, 467
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	4 cut(s)	185, 226, 263, 280
AluI	AGCT	4 cut(s)	185, 226, 263, 280
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	262
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	3 cut(s)	195, 312, 407
BaeGI	GKGCMC	1 cut(s)	334
BbrPI	CACGTG	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	435
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	61, 67
Bpu10I	CCTNAGC	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	76, 82
BseMII	CTCAG	2 cut(s)	42, 255
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	97, 267, 415
BspACI	CCGC	2 cut(s)	74, 471
BspCNI	CTCAG	2 cut(s)	43, 256
BspPI	GGATC	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	290
BssMI	GATC	3 cut(s)	97, 267, 415
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	2 cut(s)	270, 288
BstBAI	YACGTR	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	51, 264
BstF5I	GGATG	2 cut(s)	76, 82
BstKTI	GATC	3 cut(s)	100, 270, 418
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	97, 267, 415
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	76, 82
Cac8I	GCNNGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	146
CviJI	RGCY	8 cut(s)	39, 50, 113, 185, 226, 263, 280, 430
CviKI_1	RGCY	8 cut(s)	39, 50, 113, 185, 226, 263, 280, 430
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	51, 264
DpnI	GATC	3 cut(s)	99, 269, 417
DpnII	GATC	3 cut(s)	97, 267, 415
Eam1104I	CTCTTC	2 cut(s)	270, 288
EarI	CTCTTC	2 cut(s)	270, 288
Eco31I	GGTCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	135
Eco72I	CACGTG	1 cut(s)	335
EcoRI	GAATTC	2 cut(s)	195, 312
EcoRII	CCWGG	1 cut(s)	270
FaiI	YATR	5 cut(s)	107, 166, 249, 251, 414
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	2 cut(s)	83, 89
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	3 cut(s)	29, 40, 441
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	3 cut(s)	4, 244, 332
HpyF3I	CTNAG	2 cut(s)	51, 264
HpySE526I	ACGT	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	97, 267, 415
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	260, 368
LpnPI	CCDG	6 cut(s)	30, 134, 173, 257, 284, 314
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	61, 67
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	99, 269, 417
MboI	GATC	3 cut(s)	97, 267, 415
MboII	GAAGA	6 cut(s)	287, 305, 373, 389, 392, 395
MfeI	CAATTG	2 cut(s)	372, 462
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	5 cut(s)	195, 312, 372, 407, 462
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	34, 46, 207
MseI	TTAA	1 cut(s)	176
MspA1I	CMGCKG	3 cut(s)	185, 226, 473
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	2 cut(s)	372, 462
MvaI	CCWGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	97, 267, 415
NmuCI	GTSAC	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	270
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	146
PmaCI	CACGTG	1 cut(s)	335
PmlI	CACGTG	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	270
PspCI	CACGTG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	267
PvuII	CAGCTG	2 cut(s)	185, 226
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	97, 267, 415
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	7 cut(s)	26, 187, 228, 265, 282, 331, 337
SfaNI	GCATC	2 cut(s)	61, 67
Sse9I	AATT	5 cut(s)	195, 312, 372, 407, 462
SsiI	CCGC	2 cut(s)	74, 471
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	316, 418
TasI	AATT	5 cut(s)	195, 312, 372, 407, 462
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	420
VneI	GTGCAC	1 cut(s)	330
XapI	RAATTY	3 cut(s)	195, 312, 407
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.