Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Reverse (-)

71160456 .. 71162434

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCTCGGTAATAGCTCTCCCGGCGGTGTATTCGTAGGCTATTCCCTTGGCGGGAATAAGTACCTCGGCGGTACAATGAGCCGGAGACTTCGTCACTTGGAAAATGACAAGTGGGAAGTTCCGCTAGCGGAGTTTCGCTTAGCGGAGACTTCGTCACTTGGAACGTTTCTTCGGTGGTTATTTCCACTAGACGCTTCATCCGATGGTGGTGGGCACGTGGCCACCTCCTGGAGAGTTAGCATCCGGAGGCGTGTCTCCTTGGTCCGGCTGTCTTCTCGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.42

Weight (kDa)

11.12

Isoelectric Point (pI)

73.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	6 cut(s)	24, 51, 69, 122, 128, 143
AclI	AACGTT	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	219
AcvI	CACGTG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	62, 73
AfiI	CCNNNNNNNGG	3 cut(s)	51, 228, 264
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	3 cut(s)	79, 140, 259
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	264
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	79, 140, 259
BfaI	CTAG	2 cut(s)	125, 188
BlpI	GCTNAGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	21, 229
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmrFI	CCNGG	2 cut(s)	21, 229
BmsI	GCATC	1 cut(s)	249
BmtI	GCTAGC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	250
Bpu1102I	GCTNAGC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	46, 64, 258
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 228, 264
BseAI	TCCGGA	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	3 cut(s)	46, 64, 258
BseGI	GGATG	2 cut(s)	197, 240
BseLI	CCNNNNNNNGG	3 cut(s)	51, 228, 264
BseSI	GKGCMC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	4 cut(s)	21, 82, 244, 265
BslI	CCNNNNNNNGG	3 cut(s)	51, 228, 264
BsmAI	GTCTC	3 cut(s)	79, 140, 259
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp13I	TCCGGA	1 cut(s)	243
Bsp1720I	GCTNAGC	1 cut(s)	139
BspACI	CCGC	6 cut(s)	24, 51, 69, 122, 128, 143
BspANI	GGCC	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	46, 64, 258
BssT1I	CCWWGG	2 cut(s)	46, 258
Bst2UI	CCWGG	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	197, 240
BstMAI	GTCTC	3 cut(s)	79, 140, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	19, 227
BstSLI	GKGCMC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	197, 240
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	61, 72
CviJI	RGCY	5 cut(s)	15, 39, 81, 221, 268
CviKI_1	RGCY	5 cut(s)	15, 39, 81, 221, 268
CviQI	GTAC	2 cut(s)	61, 72
DdeI	CTNAG	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	46, 258
Eco47I	GGWCC	1 cut(s)	262
Eco72I	CACGTG	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	2 cut(s)	46, 258
ErhI	CCWWGG	2 cut(s)	46, 258
FauI	CCCGC	1 cut(s)	44
FokI	GGATG	2 cut(s)	184, 227
FspBI	CTAG	2 cut(s)	125, 188
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	4 cut(s)	21, 82, 244, 265
HgaI	GACGC	1 cut(s)	200
HpaII	CCGG	4 cut(s)	21, 82, 244, 265
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	164, 216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	139
HpySE526I	ACGT	2 cut(s)	164, 216
Kpn2I	TCCGGA	1 cut(s)	243
LpnPI	CCDG	6 cut(s)	34, 95, 214, 241, 257, 278
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	2 cut(s)	125, 188
MaeII	ACGT	2 cut(s)	164, 216
MaeIII	GTNAC	2 cut(s)	92, 153
MboII	GAAGA	2 cut(s)	161, 264
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
MnlI	CCTC	3 cut(s)	74, 235, 240
Mox20I	TGGCCA	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	283
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	4 cut(s)	21, 82, 244, 265
MspR9I	CCNGG	2 cut(s)	21, 229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	21
NheI	GCTAGC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	92, 153
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PflFI	GACNNNGTC	2 cut(s)	90, 151
PflMI	CCANNNNNTGG	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	227
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	217
Psp1406I	AACGTT	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	262
PsyI	GACNNNGTC	2 cut(s)	90, 151
RsaI	GTAC	2 cut(s)	62, 73
RsaNI	GTAC	2 cut(s)	61, 72
SaqAI	TTAA	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	21, 229
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	5 cut(s)	17, 66, 167, 219, 227
SfaNI	GCATC	1 cut(s)	249
SinI	GGWCC	1 cut(s)	262
SsiI	CCGC	6 cut(s)	24, 51, 69, 122, 128, 143
SspMI	CTAG	2 cut(s)	125, 188
StyD4I	CCNGG	2 cut(s)	19, 227
StyI	CCWWGG	2 cut(s)	46, 258
TaiI	ACGT	2 cut(s)	167, 219
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	92, 153
Tsp45I	GTSAC	2 cut(s)	92, 153
TspDTI	ATGAA	1 cut(s)	186
Tth111I	GACNNNGTC	2 cut(s)	90, 151
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	262
XspI	CTAG	2 cut(s)	125, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.