Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Forward (+)

22188074 .. 22192108

Gene Structure 4035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTGCAGTTCATCTCGTCTATACATTTTCCAAGGACCGTCTGAGTTGATGCCACCAGAAAAAGGCTTGAAAGTTTATGAGAGTACAAGATGCAAGAAGCTGAGTTTTGGACTTGAGGATGATGGTGAGGAAAATGGAAAAGATGGCTCATATGAAGAAGAGTTAGATGCTATTCGTGCTAAAGATGTCTTTCAAGGTGGATTGACTCAAGGGCAACAAACTCAGATTGCGCGAAATGAACAAAGAACAGAACAGACGGATGACATGCTTCCAAGCTTGGAAGAACTGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATTTTAAGAAGGAACTAAGGTGGGTGGAAGAAATATCTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGGCCCCATCAGGCAAGGGCAACACTAATTCACATTCTAGAACTTCAGATAAAACGATGTAAACAAGCTGTTGAGGATATAAAGAGGAGGAGAGAAGAAGCACATGCACTTCTGAAGGAGTCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

176

Amino Acids

20.33

Weight (kDa)

6.01

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	117 - 172	8.9e-16	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	232
AciI	CCGC	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	2 cut(s)	85, 305
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	70, 194, 373
AluBI	AGCT	3 cut(s)	100, 276, 470
AluI	AGCT	3 cut(s)	100, 276, 470
AoxI	GGCC	2 cut(s)	313, 404
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	3 cut(s)	35, 314, 405
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	35
BccI	CCATC	3 cut(s)	116, 137, 417
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	35, 314, 405
BmiI	GGNNCC	1 cut(s)	407
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	4 cut(s)	39, 80, 157, 391
BmuI	ACTGGG	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	134, 192
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	124, 265
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	33, 92, 236
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	502, 505
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	315, 406
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	315, 406
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	2 cut(s)	315, 406
BspCNI	CTCAG	3 cut(s)	34, 93, 235
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	39, 303
Bst6I	CTCTTC	1 cut(s)	153
BstDEI	CTNAG	4 cut(s)	42, 101, 222, 341
BstF5I	GGATG	2 cut(s)	124, 265
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	268, 509
BstUI	CGCG	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	315, 406
BtsCI	GGATG	2 cut(s)	124, 265
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	35, 314, 405
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	84, 304
CviAII	CATG	2 cut(s)	265, 506
CviJI	RGCY	7 cut(s)	66, 100, 147, 276, 315, 406, 470
CviKI_1	RGCY	7 cut(s)	66, 100, 147, 276, 315, 406, 470
CviQI	GTAC	2 cut(s)	84, 304
DdeI	CTNAG	4 cut(s)	42, 101, 222, 341
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	268, 509
FaiI	YATR	8 cut(s)	22, 78, 151, 153, 266, 368, 482, 507
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	2 cut(s)	264, 505
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	131, 272
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	315, 406
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	268, 509
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	2 cut(s)	205, 521
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	299, 464
Hpy188I	TCNGA	5 cut(s)	43, 225, 393, 450, 516
Hpy188III	TCNNGA	2 cut(s)	373, 440
Hpy8I	GTNNAC	2 cut(s)	299, 464
HpyAV	CCTTC	2 cut(s)	328, 511
HpyCH4III	ACNGT	2 cut(s)	39, 303
HpyCH4V	TGCA	4 cut(s)	6, 93, 382, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	4 cut(s)	42, 101, 222, 341
Hsp92II	CATG	2 cut(s)	268, 509
HspAI	GCGC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	69, 272, 398
LweI	GCATC	4 cut(s)	39, 80, 157, 391
MaeI	CTAG	1 cut(s)	440
MboII	GAAGA	6 cut(s)	167, 170, 293, 365, 380, 509
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	199, 530
MnlI	CCTC	5 cut(s)	109, 121, 469, 480, 483
MseI	TTAA	2 cut(s)	330, 529
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeI	CATATG	1 cut(s)	151
NlaIII	CATG	2 cut(s)	268, 509
NlaIV	GGNNCC	1 cut(s)	407
NspI	RCATGY	2 cut(s)	268, 509
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	2 cut(s)	199, 529
PpsI	GAGTC	2 cut(s)	199, 529
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	3 cut(s)	35, 314, 405
RsaI	GTAC	2 cut(s)	85, 305
RsaNI	GTAC	2 cut(s)	84, 304
SaqAI	TTAA	2 cut(s)	330, 529
SatI	GCNGC	1 cut(s)	404
Sau96I	GGNCC	3 cut(s)	35, 314, 405
SchI	GAGTC	2 cut(s)	199, 530
SetI	ASST	5 cut(s)	102, 199, 278, 347, 472
SfaNI	GCATC	4 cut(s)	39, 80, 157, 391
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	113, 207
SmoI	CTYRAG	2 cut(s)	113, 207
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	1 cut(s)	403
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	39, 303
TasI	AATT	1 cut(s)	429
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	330, 529
Tru9I	TTAA	2 cut(s)	330, 529
TspDTI	ATGAA	2 cut(s)	168, 252
TspGWI	ACGGA	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	35
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	2 cut(s)	268, 509
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.