RchiOBHm_Chr5g0038531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005560
Physical Location & Seq
Reverse (-)
33113191 .. 33115546
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31716

Sequence Viewer

Length: 393 bp
ATGTTTCCGTGTTTTGAGCAACAAAGGGAAAAGCTGGGTGCTATAGTGAGGAGCGTCGGTGGAAGGAACTGCAGTTCTCACTCTCTCTCTCTCTCGTCCGAAACCATCCAAGAAACAGAGCAATTATTTTCCAAGCTTGTGAGGAGCGTCGGTGGAAGGAACTGCAGTTCTCACTCTCTCTCTCTCTCGTCCGAAACCATCCAAGAAACAGAGCAATTATTCTCCAAGCTTGTGAGGAGCGTCGGTGGAAGGAACTGCAGTTCTCGCTCCATAGGCCATCGATCGACCCCAGACCACGTTCCACGCCTTCACCTATACCTTGCGCAGCTGCTAGAGGCAGCCTTGAACCGCGACACGGCCACCAGCGGCGGCGGGAAGCTCCGCCCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.18

Weight (kDa)

9.43

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
AccII CGCG 1 cut(s) 351
AciI CCGC 5 cut(s) 349, 366, 369, 372, 382
AcoI YGGCCR 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 1 cut(s) 346
AloI GAACNNNNNNTCC 6 cut(s) 58, 90, 151, 183, 244, 276
AluBI AGCT 5 cut(s) 34, 136, 229, 328, 379
AluI AGCT 5 cut(s) 34, 136, 229, 328, 379
AoxI GGCC 2 cut(s) 274, 357
ApeKI GCWGC 3 cut(s) 325, 328, 338
AspLEI GCGC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 302
BbvI GCAGC 3 cut(s) 315, 337, 350
BccI CCATC 3 cut(s) 113, 206, 285
BceAI ACGGC 1 cut(s) 372
BcnI CCSGG 1 cut(s) 386
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 4 cut(s) 42, 70, 163, 256
BisI GCNGC 5 cut(s) 326, 329, 339, 367, 370
BlsI GCNGC 5 cut(s) 327, 330, 340, 368, 371
Bme1390I CCNGG 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 280
BsaXI ACNNNNNCTCC 6 cut(s) 43, 73, 136, 166, 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 355
BseCI ATCGAT 1 cut(s) 280
BseGI GGATG 2 cut(s) 105, 198
BseLI CCNNNNNNNGG 1 cut(s) 355
BseRI GAGGAG 3 cut(s) 64, 157, 250
BseXI GCAGC 3 cut(s) 315, 337, 350
BseYI CCCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 351
Bsh1285I CGRYCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 276, 359
BshVI ATCGAT 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 355
BsnI GGCC 2 cut(s) 276, 359
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 5 cut(s) 349, 366, 369, 372, 382
BspANI GGCC 2 cut(s) 276, 359
BspDI ATCGAT 1 cut(s) 280
BspFNI CGCG 1 cut(s) 351
BspMAI CTGCAG 3 cut(s) 74, 167, 260
BssMI GATC 1 cut(s) 281
BstF5I GGATG 2 cut(s) 105, 198
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 284
BstMBI GATC 1 cut(s) 281
BstMCI CGRYCG 1 cut(s) 284
BstMWI GCNNNNNNNGC 2 cut(s) 264, 273
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 4 cut(s) 42, 70, 163, 256
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 3 cut(s) 315, 337, 350
Bsu15I ATCGAT 1 cut(s) 280
BsuRI GGCC 2 cut(s) 276, 359
BsuTUI ATCGAT 1 cut(s) 280
BtsCI GGATG 2 cut(s) 105, 198
CfoI GCGC 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 280
CseI GACGC 3 cut(s) 43, 136, 229
CviJI RGCY 8 cut(s) 34, 136, 229, 276, 328, 341, 359, 379
CviKI_1 RGCY 8 cut(s) 34, 136, 229, 276, 328, 341, 359, 379
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 357
EciI GGCGGA 1 cut(s) 371
FaiI YATR 3 cut(s) 44, 272, 316
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 5 cut(s) 326, 329, 339, 367, 370
FokI GGATG 2 cut(s) 92, 185
Fsp4HI GCNGC 5 cut(s) 326, 329, 339, 367, 370
FspBI CTAG 1 cut(s) 332
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 1 cut(s) 324
GluI GCNGC 5 cut(s) 326, 329, 339, 367, 370
GsaI CCCAGC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 276, 359
HapII CCGG 1 cut(s) 386
HgaI GACGC 3 cut(s) 43, 136, 229
HhaI GCGC 1 cut(s) 325
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HindIII AAGCTT 2 cut(s) 134, 227
HpaII CCGG 1 cut(s) 386
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 100, 193
Hpy99I CGWCG 3 cut(s) 59, 152, 245
HpyAV CCTTC 4 cut(s) 57, 150, 243, 317
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 72, 165, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 273
HpySE526I ACGT 1 cut(s) 297
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 281
LmnI GCTCC 5 cut(s) 51, 144, 237, 272, 384
LpnPI CCDG 3 cut(s) 20, 303, 376
Lsp1109I GCAGC 3 cut(s) 315, 337, 350
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 297
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MluCI AATT 2 cut(s) 122, 215
MnlI CCTC 4 cut(s) 42, 135, 228, 328
MspA1I CMGCKG 2 cut(s) 328, 366
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 386
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 2 cut(s) 264, 273
NciI CCSGG 1 cut(s) 386
NdeII GATC 1 cut(s) 281
NsbI TGCGCA 1 cut(s) 324
PkrI GCNGC 5 cut(s) 327, 330, 340, 368, 371
Ple19I CGATCG 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 34
PstI CTGCAG 3 cut(s) 74, 167, 260
PvuI CGATCG 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 328
SatI GCNGC 5 cut(s) 326, 329, 339, 367, 370
Sau3AI GATC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 386
SetI ASST 8 cut(s) 36, 138, 231, 300, 315, 321, 330, 381
SfcI CTRYAG 4 cut(s) 42, 70, 163, 256
Sse9I AATT 2 cut(s) 122, 215
SsiI CCGC 5 cut(s) 349, 366, 369, 372, 382
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 384
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 280, 284
TasI AATT 2 cut(s) 122, 215
TauI GCSGC 2 cut(s) 369, 372
TseI GCWGC 3 cut(s) 325, 328, 338
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.