Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001218.1

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Forward (+)

101126 .. 110334

Gene Structure 9209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001218.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgcgtgaagatattttagatcagcaggcatcacttcaacgagcaagacttgaagcctctcttgctgatggcatctcttggggtatgggagaggatgccattatagaagaagctgaggttcgcctcgaccttgcgcagctgcaagaggcagtcttgaaccgcgacactgccaccaccggcggcgggaagctccgcccgctcgccgtttctgtatttcttcgccggtttctggaaaatttccggccaacccgactggttcgaggtaatttctatcccttccggtcattttcagcttacatgctagttaggaaagtggttgggcttgatgagatgaagaggaacagcctggccccgacaccattggtggtggtcggcggcggctcggcccctaactccggcgtccctttccggccacctccggggttcccagcttcagaagcttctgatgccatcttggcgcggcgcgtggcggcgcgtcggtggcgatctggagggagaagttccgctggcggtgtttcgctcagcggagacttcgtctcttggaggatgacaagggagaagttcctctggcggtgtttcgctcagcggagacttcgtctcttggaggatgacaagggagaagttccgctggcggtgtttcgctcagcggagacttcgtctcttggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

223

Amino Acids

24.57

Weight (kDa)

10.47

Isoelectric Point (pI)

61.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	199
AccII	CGCG	4 cut(s)	162, 460, 465, 475
AcoI	YGGCCR	2 cut(s)	242, 410
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	399
AfiI	CCNNNNNNNGG	4 cut(s)	183, 229, 395, 419
AgsI	TTSAA	3 cut(s)	38, 53, 157
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	6 cut(s)	113, 139, 190, 293, 431, 440
AluI	AGCT	6 cut(s)	113, 139, 190, 293, 431, 440
Alw26I	GTCTC	6 cut(s)	522, 541, 583, 602, 644, 663
AoxI	GGCC	4 cut(s)	242, 348, 384, 410
ApeKI	GCWGC	2 cut(s)	136, 139
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	4 cut(s)	136, 460, 465, 475
AspS9I	GGNCC	2 cut(s)	349, 385
AsuC2I	CCSGG	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	126, 148
BccI	CCATC	2 cut(s)	62, 458
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	6 cut(s)	522, 541, 583, 602, 644, 663
BfaI	CTAG	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	7 cut(s)	137, 140, 181, 376, 379, 461, 471
BlpI	GCTNAGC	3 cut(s)	521, 582, 643
BlsI	GCNGC	7 cut(s)	138, 141, 182, 377, 380, 462, 472
Bme1390I	CCNGG	2 cut(s)	347, 420
BmgT120I	GGNCC	2 cut(s)	349, 385
BmiI	GGNNCC	3 cut(s)	351, 387, 425
BmrFI	CCNGG	2 cut(s)	347, 420
BmsI	GCATC	4 cut(s)	38, 81, 85, 436
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	3 cut(s)	521, 582, 643
BpuMI	CCSGG	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	6 cut(s)	519, 549, 580, 610, 641, 671
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 229, 395, 419
Bse118I	RCCGGY	2 cut(s)	176, 222
Bse1I	ACTGG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	3 cut(s)	100, 552, 613
BseLI	CCNNNNNNNGG	4 cut(s)	183, 229, 395, 419
BseMII	CTCAG	4 cut(s)	105, 535, 596, 657
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	126, 148
BseYI	CCCAGC	1 cut(s)	427
Bsh1236I	CGCG	4 cut(s)	162, 460, 465, 475
BshFI	GGCC	4 cut(s)	244, 350, 386, 412
BsiSI	CCGG	7 cut(s)	177, 223, 241, 280, 396, 409, 419
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	4 cut(s)	183, 229, 395, 419
BsmAI	GTCTC	6 cut(s)	522, 541, 583, 602, 644, 663
BsmBI	CGTCTC	3 cut(s)	541, 602, 663
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	4 cut(s)	244, 350, 386, 412
Bsp143I	GATC	2 cut(s)	19, 485
Bsp1720I	GCTNAGC	3 cut(s)	521, 582, 643
BspANI	GGCC	4 cut(s)	244, 350, 386, 412
BspCNI	CTCAG	4 cut(s)	106, 534, 595, 656
BspFNI	CGCG	4 cut(s)	162, 460, 465, 475
BspLI	GGNNCC	3 cut(s)	351, 387, 425
BsrBI	CCGCTC	1 cut(s)	199
BsrFI	RCCGGY	2 cut(s)	176, 222
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	2 cut(s)	176, 222
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	2 cut(s)	19, 485
BssNI	GRCGYC	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	399
BstC8I	GCNNGC	5 cut(s)	27, 197, 201, 508, 630
BstDEI	CTNAG	4 cut(s)	114, 521, 582, 643
BstF5I	GGATG	3 cut(s)	100, 552, 613
BstFNI	CGCG	4 cut(s)	162, 460, 465, 475
BstHHI	GCGC	4 cut(s)	136, 460, 465, 475
BstKTI	GATC	2 cut(s)	22, 488
BstMAI	GTCTC	6 cut(s)	522, 541, 583, 602, 644, 663
BstMBI	GATC	2 cut(s)	19, 485
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 196, 437, 446, 455, 481
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	345, 418
BstUI	CGCG	4 cut(s)	162, 460, 465, 475
BstV1I	GCAGC	2 cut(s)	126, 148
BsuRI	GGCC	4 cut(s)	244, 350, 386, 412
BtsCI	GGATG	3 cut(s)	100, 552, 613
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	5 cut(s)	27, 197, 201, 508, 630
CfoI	GCGC	4 cut(s)	136, 460, 465, 475
Cfr10I	RCCGGY	2 cut(s)	176, 222
Cfr13I	GGNCC	2 cut(s)	349, 385
CseI	GACGC	2 cut(s)	388, 464
CviAII	CATG	1 cut(s)	298
DdeI	CTNAG	4 cut(s)	114, 521, 582, 643
DpnI	GATC	2 cut(s)	21, 487
DpnII	GATC	2 cut(s)	19, 485
EaeI	YGGCCR	2 cut(s)	242, 410
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	345
Esp3I	CGTCTC	3 cut(s)	541, 602, 663
FaeI	CATG	1 cut(s)	301
FaiI	YATR	3 cut(s)	86, 104, 299
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	1 cut(s)	297
FauI	CCCGC	2 cut(s)	176, 204
Fnu4HI	GCNGC	7 cut(s)	137, 140, 181, 376, 379, 461, 471
FokI	GGATG	3 cut(s)	107, 559, 620
Fsp4HI	GCNGC	7 cut(s)	137, 140, 181, 376, 379, 461, 471
FspBI	CTAG	1 cut(s)	302
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	4 cut(s)	135, 459, 464, 474
GluI	GCNGC	7 cut(s)	137, 140, 181, 376, 379, 461, 471
GsaI	CCCAGC	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	244, 350, 386, 412
HapII	CCGG	7 cut(s)	177, 223, 241, 280, 396, 409, 419
HgaI	GACGC	2 cut(s)	388, 464
HhaI	GCGC	4 cut(s)	136, 460, 465, 475
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	4 cut(s)	134, 458, 463, 473
HinP1I	GCGC	4 cut(s)	134, 458, 463, 473
HindIII	AAGCTT	1 cut(s)	438
HpaII	CCGG	7 cut(s)	177, 223, 241, 280, 396, 409, 419
Hpy188I	TCNGA	2 cut(s)	436, 445
Hpy188III	TCNNGA	3 cut(s)	154, 230, 489
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 196, 437, 446, 455, 481
HpyF3I	CTNAG	4 cut(s)	114, 521, 582, 643
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	4 cut(s)	134, 458, 463, 473
Kzo9I	GATC	2 cut(s)	19, 485
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	2 cut(s)	126, 148
LweI	GCATC	4 cut(s)	38, 81, 85, 436
MaeI	CTAG	1 cut(s)	302
MalI	GATC	2 cut(s)	21, 487
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	2 cut(s)	19, 485
MboII	GAAGA	4 cut(s)	20, 119, 209, 346
MluCI	AATT	2 cut(s)	235, 265
MspA1I	CMGCKG	6 cut(s)	139, 506, 525, 586, 628, 647
MspI	CCGG	7 cut(s)	177, 223, 241, 280, 396, 409, 419
MspR9I	CCNGG	2 cut(s)	347, 420
MteI	GCGCNGCGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	4 cut(s)	162, 460, 465, 475
MwoI	GCNNNNNNNGC	6 cut(s)	62, 196, 437, 446, 455, 481
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	2 cut(s)	19, 485
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	3 cut(s)	351, 387, 425
NmeAIII	GCCGAG	1 cut(s)	362
NsbI	TGCGCA	1 cut(s)	135
NspI	RCATGY	1 cut(s)	301
PflFI	GACNNNGTC	3 cut(s)	533, 594, 655
PkrI	GCNGC	7 cut(s)	138, 141, 182, 377, 380, 462, 472
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	351, 387, 425
PspPI	GGNCC	2 cut(s)	349, 385
PsyI	GACNNNGTC	3 cut(s)	533, 594, 655
PvuII	CAGCTG	1 cut(s)	139
SatI	GCNGC	7 cut(s)	137, 140, 181, 376, 379, 461, 471
Sau3AI	GATC	2 cut(s)	19, 485
Sau96I	GGNCC	2 cut(s)	349, 385
ScrFI	CCNGG	2 cut(s)	347, 420
SfaNI	GCATC	4 cut(s)	38, 81, 85, 436
SgrAI	CRCCGGYG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	235, 265
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	345, 418
TaqI	TCGA	2 cut(s)	126, 259
TasI	AATT	2 cut(s)	235, 265
TauI	GCSGC	5 cut(s)	183, 378, 381, 463, 473
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	2 cut(s)	136, 139
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	172
Tth111I	GACNNNGTC	3 cut(s)	533, 594, 655
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.