Rroxscaffold_2G00086540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005560
Physical Location & Seq
Reverse (-)
8710984 .. 8724372
13389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086540.1

Sequence Viewer

Length: 432 bp
ATGTCAACAGGAATGTCCTCAGATGAAGCATTGCATAAAGACATGCAGAAAAAGTTCACATTAGGATCGCTCACTTTAGCTAAAGTTGTTGAAGTAATAATCGAGGCAGGAATCTCCTTCTATCTCTTTGGAAATTATATCTTATCAATTGATATGATGGTGCGTATATTCGTTACTTCAATTTATTTCCAATCTTTATCCAAACCAGAATTTAGCCAATATGAAATTAATTGGAGTAACATCACACCTTCAATCGAACACTTTCAACATCCAAAAGGACCTCACTTCCACAAAACAATCATTGACGAGTTAAATCCGGAGGAGAAGGGATTTGAAGATGCAACATCAGTTCAAGGTAATGGTGGTTCAGAAGTTGGAGCTGCACGATTCTGTAGGCTTAGCATCTCCTTGAATATTTTTTTGTCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.03

Weight (kDa)

5.46

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 316
AclWI GGATC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 209
AgsI TTSAA 7 cut(s) 92, 180, 252, 266, 335, 353, 412
AluBI AGCT 2 cut(s) 80, 380
AluI AGCT 2 cut(s) 80, 380
AlwI GGATC 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 209
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 2 cut(s) 53, 261
AspS9I GGNCC 1 cut(s) 278
AvaII GGWCC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 367
BccI CCATC 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 391
BisI GCNGC 1 cut(s) 381
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmsI GCATC 2 cut(s) 328, 411
Bpu1102I GCTNAGC 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 316
BseGI GGATG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 409
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 1 cut(s) 65
Bsp1720I GCTNAGC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 32
BspEI TCCGGA 1 cut(s) 316
BspPI GGATC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 29
BssMI GATC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 19, 398
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 278
CviAII CATG 2 cut(s) 43, 429
CviJI RGCY 4 cut(s) 80, 216, 380, 397
CviKI_1 RGCY 4 cut(s) 80, 216, 380, 397
DdeI CTNAG 2 cut(s) 19, 398
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 278
FaeI CATG 2 cut(s) 46, 432
FaiI YATR 7 cut(s) 36, 44, 138, 155, 167, 222, 430
FaqI GGGAC 1 cut(s) 409
FatI CATG 2 cut(s) 42, 428
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 381
GluI GCNGC 1 cut(s) 381
HapII CCGG 1 cut(s) 317
Hin1II CATG 2 cut(s) 46, 432
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 111, 387
HpaII CCGG 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 6, 57
Hpy188I TCNGA 2 cut(s) 22, 370
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 2 cut(s) 6, 57
HpyAV CCTTC 3 cut(s) 127, 258, 319
HpyCH4V TGCA 4 cut(s) 34, 46, 341, 383
HpyF3I CTNAG 2 cut(s) 19, 398
Hsp92II CATG 2 cut(s) 46, 432
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 65
LmnI GCTCC 1 cut(s) 377
LpnPI CCDG 3 cut(s) 93, 219, 330
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 2 cut(s) 328, 411
MaeIII GTNAC 2 cut(s) 172, 236
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 1 cut(s) 347
MfeI CAATTG 1 cut(s) 147
MluCI AATT 6 cut(s) 133, 147, 180, 209, 225, 229
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 4 cut(s) 28, 97, 291, 313
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 2 cut(s) 53, 261
MseI TTAA 2 cut(s) 228, 311
MspI CCGG 1 cut(s) 317
MunI CAATTG 1 cut(s) 147
NdeII GATC 1 cut(s) 65
NlaIII CATG 2 cut(s) 46, 432
NspI RCATGY 1 cut(s) 46
PdmI GAANNNNTTC 2 cut(s) 53, 261
PfeI GAWTC 2 cut(s) 111, 387
PkrI GCNGC 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 278
PshBI ATTAAT 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 278
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PsrI GAACNNNNNNTAC 2 cut(s) 349, 381
SaqAI TTAA 2 cut(s) 228, 311
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 278
SetI ASST 5 cut(s) 82, 250, 283, 358, 382
SfaNI GCATC 2 cut(s) 328, 411
SfcI CTRYAG 1 cut(s) 391
SinI GGWCC 1 cut(s) 278
Sse9I AATT 6 cut(s) 133, 147, 180, 209, 225, 229
SspI AATATT 1 cut(s) 415
TaqI TCGA 2 cut(s) 102, 255
TasI AATT 6 cut(s) 133, 147, 180, 209, 225, 229
TfiI GAWTC 2 cut(s) 111, 387
Tru1I TTAA 2 cut(s) 228, 311
Tru9I TTAA 2 cut(s) 228, 311
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 39, 237
VpaK11BI GGWCC 1 cut(s) 278
VspI ATTAAT 1 cut(s) 228
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 46
XmnI GAANNNNTTC 2 cut(s) 53, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.