Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005560

Physical Location & Seq

Genomic Coordinates Forward (+)

23407804 .. 23417974

Gene Structure 10171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGGTCTTTGGGCCTCACCATGGGCTTCATTAGGAGTAGCCAAAAACTAGCCCGCAAGAACTCCAAGGAACAACCCTCCGGATACCCCGGATTGTTAGCAACAATCCCCATCCCAAGACAAACCAAGTGGTGCGGGCGGGCCTATGCCAAGGCTGCCACCGGACAAGGGCGATCCGTTAGTGCGAAACCTACCGCCGACCTAGAGTTGTGGAGAGAACCCAAGAATTCTCTACACTCTTCTTATTCAACACTTTGGTCGCCCACGACGCTTGCTCTCGCCATCGCCTCGTCGAAACTAGTCGTCGTGCTCTCTGCCGCCGTGCTCGACGCCAAGCCGACGGTCCTCGTCTCCGAGAAGCTCGGCGAGGCCGGGGTTGACCTTCGAAGGAATCGACGACGGACCGAAAACTCGCTATCCGCTATTCTGCATGGGATTCGACCATCGGAAACTGCTCAGGTTATCATCCTTGGCATTTCCCGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009561 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0017076 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

162

Amino Acids

17.43

Weight (kDa)

10.65

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005560)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0144561 RchiOBHm_Chr2g0164321 RchiOBHm_Chr2g0164551 RchiOBHm_Chr3g0478401 RchiOBHm_Chr5g0038531
rosa_multiflora	Rmu_co8235471.1_g000001 Rmu_sc0001218.1_g000020 Rmu_sc0002269.1_g000009 Rmu_sc0005142.1_g000033 Rmu_sc0005767.1_g000024 Rmu_sc0015958.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086500 Rroxscaffold_2G00086530 Rroxscaffold_2G00086540 Rroxscaffold_2G00133700 Rroxscaffold_5G00342250 Rroxscaffold_5G00351130 Rroxscaffold_6G00401110
rosa_rugosa	Rorug01G0234300 Rorug02G0508600 Rorug02G0508900
rosa_samantha	Rh2CG558600 Rh2DG596500 Rh2DG598300 Rh2DG598400 Rh3AG218300 Rh3BG249200 Rh3CG244300
rosa_wichuraiana	Rw7G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	80
AciI	CCGC	7 cut(s)	55, 135, 139, 195, 318, 420, 481
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	22, 168
AgsI	TTSAA	1 cut(s)	249
AhlI	ACTAGT	1 cut(s)	298
AluBI	AGCT	1 cut(s)	361
AluI	AGCT	1 cut(s)	361
Alw21I	GWGCWC	2 cut(s)	312, 327
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	168
Aor13HI	TCCGGA	1 cut(s)	80
AoxI	GGCC	3 cut(s)	13, 141, 369
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	226
AspS9I	GGNCC	4 cut(s)	13, 141, 343, 402
AsuC2I	CCSGG	2 cut(s)	90, 373
AsuHPI	GGTGA	1 cut(s)	10
AsuII	TTCGAA	1 cut(s)	385
AvaII	GGWCC	2 cut(s)	343, 402
Bbv12I	GWGCWC	2 cut(s)	312, 327
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	3 cut(s)	119, 290, 451
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciVI	GTATCC	1 cut(s)	77
BcnI	CCSGG	2 cut(s)	90, 373
BcoDI	GTCTC	1 cut(s)	355
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	3 cut(s)	50, 203, 299
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	156, 318
BlsI	GCNGC	2 cut(s)	157, 319
Bme1390I	CCNGG	2 cut(s)	90, 373
Bme18I	GGWCC	2 cut(s)	343, 402
BmgT120I	GGNCC	4 cut(s)	13, 141, 343, 402
BmrFI	CCNGG	2 cut(s)	90, 373
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	385
BpuMI	CCSGG	2 cut(s)	90, 373
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	6 cut(s)	21, 66, 88, 150, 372, 469
BsaWI	WCCGGW	2 cut(s)	80, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 168
BseAI	TCCGGA	1 cut(s)	80
BseDI	CCNNGG	6 cut(s)	21, 66, 88, 150, 372, 469
BseGI	GGATG	2 cut(s)	111, 465
BseLI	CCNNNNNNNGG	2 cut(s)	22, 168
BseMII	CTCAG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	142
BshFI	GGCC	3 cut(s)	15, 143, 371
BsiHKAI	GWGCWC	2 cut(s)	312, 327
BsiSI	CCGG	4 cut(s)	81, 90, 162, 372
BslI	CCNNNNNNNGG	2 cut(s)	22, 168
BsmAI	GTCTC	1 cut(s)	355
BsmBI	CGTCTC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	15, 143, 371
Bsp119I	TTCGAA	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	312, 327
Bsp13I	TCCGGA	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	173
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	7 cut(s)	55, 135, 139, 195, 318, 420, 481
BspANI	GGCC	3 cut(s)	15, 143, 371
BspCNI	CTCAG	1 cut(s)	469
BspEI	TCCGGA	1 cut(s)	80
BspPI	GGATC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	385
BssECI	CCNNGG	6 cut(s)	21, 66, 88, 150, 372, 469
BssMI	GATC	1 cut(s)	173
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	4 cut(s)	21, 66, 150, 469
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	330
BstBI	TTCGAA	1 cut(s)	385
BstC8I	GCNNGC	4 cut(s)	55, 137, 141, 273
BstDEI	CTNAG	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	111, 465
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 268, 480
BstSCI	CCNGG	2 cut(s)	88, 371
BstV1I	GCAGC	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	15, 143, 371
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	111, 465
Cac8I	GCNNGC	4 cut(s)	55, 137, 141, 273
Cfr13I	GGNCC	4 cut(s)	13, 141, 343, 402
CpoI	CGGWCCG	1 cut(s)	402
CseI	GACGC	2 cut(s)	277, 338
CspCI	CAANNNNNGTGG	4 cut(s)	110, 145, 253, 288
CspI	CGGWCCG	1 cut(s)	402
CviAII	CATG	2 cut(s)	22, 431
CviJI	RGCY	9 cut(s)	15, 27, 42, 53, 143, 155, 337, 361, 371
CviKI_1	RGCY	9 cut(s)	15, 27, 42, 53, 143, 155, 337, 361, 371
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco130I	CCWWGG	4 cut(s)	21, 66, 150, 469
Eco47I	GGWCC	2 cut(s)	343, 402
EcoRI	GAATTC	1 cut(s)	226
EcoT14I	CCWWGG	4 cut(s)	21, 66, 150, 469
ErhI	CCWWGG	4 cut(s)	21, 66, 150, 469
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	2 cut(s)	25, 434
FaiI	YATR	3 cut(s)	23, 147, 432
FatI	CATG	2 cut(s)	21, 430
FauI	CCCGC	3 cut(s)	62, 128, 132
Fnu4HI	GCNGC	2 cut(s)	156, 318
FokI	GGATG	2 cut(s)	98, 452
Fsp4HI	GCNGC	2 cut(s)	156, 318
FspBI	CTAG	3 cut(s)	50, 203, 299
GluI	GCNGC	2 cut(s)	156, 318
HaeIII	GGCC	3 cut(s)	15, 143, 371
HapII	CCGG	4 cut(s)	81, 90, 162, 372
HgaI	GACGC	2 cut(s)	277, 338
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	25, 434
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	391, 436
HpaII	CCGG	4 cut(s)	81, 90, 162, 372
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	2 cut(s)	355, 448
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	7 cut(s)	271, 295, 308, 332, 343, 399, 402
HpyAV	CCTTC	2 cut(s)	381, 392
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 268, 480
HpyF3I	CTNAG	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	25, 434
Kpn2I	TCCGGA	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	173
LpnPI	CCDG	5 cut(s)	94, 103, 175, 385, 443
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	3 cut(s)	50, 203, 299
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	312, 327
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	5 cut(s)	26, 88, 298, 356, 361
MroI	TCCGGA	1 cut(s)	80
MspI	CCGG	4 cut(s)	81, 90, 162, 372
MspR9I	CCNGG	2 cut(s)	90, 373
MwoI	GCNNNNNNNGC	3 cut(s)	155, 268, 480
NciI	CCSGG	2 cut(s)	90, 373
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	25, 434
NmeAIII	GCCGAG	1 cut(s)	342
NspV	TTCGAA	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	391, 436
PkrI	GCNGC	2 cut(s)	157, 319
PspPI	GGNCC	4 cut(s)	13, 141, 343, 402
Rsr2I	CGGWCCG	1 cut(s)	402
RsrII	CGGWCCG	1 cut(s)	402
SatI	GCNGC	2 cut(s)	156, 318
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	4 cut(s)	13, 141, 343, 402
ScrFI	CCNGG	2 cut(s)	90, 373
SduI	GDGCHC	2 cut(s)	312, 327
SetI	ASST	5 cut(s)	193, 204, 363, 384, 462
SfuI	TTCGAA	1 cut(s)	385
SinI	GGWCC	2 cut(s)	343, 402
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	7 cut(s)	55, 135, 139, 195, 318, 420, 481
SspMI	CTAG	3 cut(s)	50, 203, 299
StyD4I	CCNGG	2 cut(s)	88, 371
StyI	CCWWGG	4 cut(s)	21, 66, 150, 469
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	5 cut(s)	293, 327, 385, 394, 439
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	1 cut(s)	226
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	391, 436
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	2 cut(s)	166, 415
VpaK11BI	GGWCC	2 cut(s)	343, 402
XapI	RAATTY	1 cut(s)	226
XspI	CTAG	3 cut(s)	50, 203, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.