RLG00000022511

Lysosomal beta glucosidase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
2347690 .. 2350947
3258 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022511

Sequence Viewer

Length: 1755 bp
ATGACTTTGGAGGAAAAGATTGGCCAGATGACGCAGATAGACCGCAGTGTTGCTTCAGCTGAGGTCATGAACAAGTACTACATTGGGAGTGTCTTGAGCGGCGGTGGGAGTGTGCCATCAAAACAAGCTTCTGCAGAGACTTGGGTTACAATGGTGAATGATTTTCAAAAGGGTTCTCTAACAACTCGCCTCGGTATTCCAATGATTTATGGTATTGATGCTGTTCATGGCCACAATAACGTCTACAAGGCAACAATCTTTCCCCACAATGTTGGCCTCGGAGCTACCAGGGACCCTGAGCTTGTTAAGAAGATTGGAGCTGCAACTGCACTTGAAGTTAGAGCCACAGGCATTCCATATGTCTTTGCACCTTGCATAGCGGTTTGTAGAGATCCAAGATGGGGTCGTTGTTACGAAAGCTATAGTGAAGATCATAAGGTTGTTCAAGCAATGACTCGGATCATACCTGGATTACAAGGAGATATACCACCTAACTCTAGAAAGGGTGTTCCCTTTATAGCCGCTGGAAATAAAAAGGTTGCAGCTTGTGCAAAGCATTATGTGGGCGATGGTGGAACAACCAAAGGCGTCAATGAGAATAACACTGTGATAAACAGGCATGGGTTGCTCAGCATTCACATGCCAGCCTACTATAACTCAATTATCGAAGGTGTTGCAACCATTATGGTATCTTACTCCAGCTGGAATGGAGTCAAGATGCATGCTAACCGTGATCTTGTCACTGGCTTTCTTAAAAATACTCTCCGTTTCAGGGGTTTTGTCATCTCAGATTGGGAGGGTATTGACAGAATCACCTCACCACCTCATGCCAACTACTCATACTCGATTACAGCAGGGATCAATGCTGGCATTGACATGATCATGGTTCCATACAACTATACAGAATTCATTGATGGTCTAACTTTCCAGGCAAAAAATAAAATCATTCCCATGAGCAGAATTGATGATGCAGTGAGGAGAATTTTGCGGGTTAAGTTTATAATGGGGCTATTTGAGAATCCGTTGGCTGATCTCAGCCTCGTCAACCAACTTGGCAGTCAGGAACACAGAGACTTGGCTCGGGAAGCTGTGAGGCGATCGTTAGTTCTTCTAAAGAATGGTGAATCTGCAGACAAGCCATTGCTACCCCTTCCCAAGAAGACATCAAAAATACTTGTAGCTGGAAGTCATGCAGACAATCTTGGTTATCAGTGTGGTGGTTGGACCATTGAGTGGCAGGGATTGAGTGGCAACAATCTCACACATGGTACCACAATCCTAACCGGTATAAAGAACACAGTTGATCCAGAAACCAAAGTGGTGTATATGGAGAATCCTGATGCGGAGTATGTTAAGTCAAATGATTTCTCCTATGCCATCGTTGTCGTAGGAGAACCACCATATGCGGAGACATTTGGTGACAGTTTAAATTTGACTCTCCCTGATGCGGGCCTTAAAACCATTACAAATGTTTGTGGTGCTGTGAAGTGTGTTGTCATCGTCATCTCCGGTCGTCCTGTTGTGATCCAACCATATGTTCCCCTGCTAGATGCTCTGGTTGCGGCGTGGCTTCCAGGAAGTGAAGGCCAAGGAGTTGCTGATGTTTTGTTTGGTGACTATGGTTTCACCGGCAAGCTTTCTCGCACTTGGTTTAAAACCGTTGATCAGCTGCCTATGAATGTTGGGGATCCACATTATGACCCTCTCTTCCCCTTTGGATTTGGCCTCACAACAACGCCCACCAAAGCCAACTAG

Protein Analysis

585

Amino Acids

63.56

Weight (kDa)

8.02

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 2 - 331 5.5e-68 Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C PF01915 368 - 577 1.2e-38 Glycosyl hydrolase family 3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1001
Acc65I GGTACC 1 cut(s) 1268
AccB1I GGYRCC 1 cut(s) 1268
AccB7I CCANNNNNTGG 1 cut(s) 1233
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 243
AclWI GGATC 7 cut(s) 386, 467, 866, 1298, 1519, 1682, 1695
AcoI YGGCCR 2 cut(s) 22, 229
AcsI RAATTY 3 cut(s) 905, 981, 1429
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 2 cut(s) 77, 1270
AfiI CCNNNNNNNGG 5 cut(s) 401, 772, 1233, 1447, 1448
AgeI ACCGGT 1 cut(s) 1283
AgsI TTSAA 3 cut(s) 167, 335, 446
AjnI CCWGG 4 cut(s) 287, 466, 927, 1573
AjuI GAANNNNNNNTTGG 2 cut(s) 1521, 1553
Alw26I GTCTC 3 cut(s) 131, 1065, 1403
AlwI GGATC 7 cut(s) 386, 467, 866, 1298, 1519, 1682, 1695
Ama87I CYCGRG 1 cut(s) 1080
AoxI GGCC 6 cut(s) 22, 229, 274, 1450, 1585, 1723
ApeKI GCWGC 3 cut(s) 320, 542, 1669
ApoI RAATTY 3 cut(s) 905, 981, 1429
AsiGI ACCGGT 1 cut(s) 1283
Asp718I GGTACC 1 cut(s) 1268
AspS9I GGNCC 3 cut(s) 292, 1224, 1450
AsuHPI GGTGA 7 cut(s) 166, 805, 810, 1133, 1430, 1618, 1625
AvaI CYCGRG 1 cut(s) 1080
AvaII GGWCC 2 cut(s) 292, 1224
BalI TGGCCA 2 cut(s) 24, 231
BamHI GGATCC 1 cut(s) 1687
BanI GGYRCC 1 cut(s) 1268
BbsI GAAGAC 1 cut(s) 1166
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 307, 554, 1656
BccI CCATC 5 cut(s) 124, 393, 563, 908, 1385
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BciT130I CCWGG 4 cut(s) 289, 468, 929, 1575
BclI TGATCA 2 cut(s) 879, 1663
BcoDI GTCTC 3 cut(s) 131, 1065, 1403
BfaI CTAG 3 cut(s) 498, 1547, 1753
BfmI CTRYAG 3 cut(s) 132, 421, 1128
BisI GCNGC 6 cut(s) 100, 321, 522, 543, 1563, 1670
BlpI GCTNAGC 1 cut(s) 629
BlsI GCNGC 6 cut(s) 101, 322, 523, 544, 1564, 1671
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 4 cut(s) 289, 468, 929, 1575
Bme18I GGWCC 2 cut(s) 292, 1224
BmeT110I CYCGRG 1 cut(s) 1080
BmgT120I GGNCC 3 cut(s) 292, 1224, 1450
BmiI GGNNCC 5 cut(s) 293, 294, 888, 1270, 1689
BmrFI CCNGG 4 cut(s) 289, 468, 929, 1575
BmsI GCATC 6 cut(s) 208, 708, 958, 1330, 1435, 1540
BpiI GAAGAC 1 cut(s) 1166
BpmI CTGGAG 1 cut(s) 682
Bpu10I CCTNAGC 2 cut(s) 60, 297
Bpu1102I GCTNAGC 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 588
BsaJI CCNNGG 4 cut(s) 190, 277, 288, 1588
BsaWI WCCGGW 2 cut(s) 1283, 1508
Bsc4I CCNNNNNNNGG 5 cut(s) 401, 772, 1233, 1447, 1448
Bse118I RCCGGY 2 cut(s) 1283, 1628
Bse1I ACTGG 1 cut(s) 748
Bse3DI GCAATG 2 cut(s) 456, 1139
BseBI CCWGG 4 cut(s) 289, 468, 929, 1575
BseDI CCNNGG 4 cut(s) 190, 277, 288, 1588
BseLI CCNNNNNNNGG 5 cut(s) 401, 772, 1233, 1447, 1448
BseMI GCAATG 2 cut(s) 456, 1139
BseMII CTCAG 5 cut(s) 51, 288, 643, 801, 1048
BseNI ACTGG 1 cut(s) 748
BseRI GAGGAG 1 cut(s) 991
BseXI GCAGC 3 cut(s) 307, 554, 1656
BsgI GTGCAG 1 cut(s) 312
Bsh1285I CGRYCG 2 cut(s) 1100, 1513
BshFI GGCC 6 cut(s) 24, 231, 276, 1452, 1587, 1725
BshNI GGYRCC 1 cut(s) 1268
BshTI ACCGGT 1 cut(s) 1283
BsiEI CGRYCG 2 cut(s) 1100, 1513
BsiHKCI CYCGRG 1 cut(s) 1080
BsiSI CCGG 3 cut(s) 1284, 1509, 1629
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 5 cut(s) 401, 772, 1233, 1447, 1448
BsmAI GTCTC 3 cut(s) 131, 1065, 1403
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 2 cut(s) 351, 633
BsnI GGCC 6 cut(s) 24, 231, 276, 1452, 1587, 1725
BsoBI CYCGRG 1 cut(s) 1080
Bsp1720I GCTNAGC 1 cut(s) 629
BspANI GGCC 6 cut(s) 24, 231, 276, 1452, 1587, 1725
BspCNI CTCAG 5 cut(s) 52, 289, 642, 800, 1047
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 5 cut(s) 293, 294, 888, 1270, 1689
BspMAI CTGCAG 2 cut(s) 136, 1132
BspPI GGATC 7 cut(s) 386, 467, 866, 1298, 1519, 1682, 1695
BspT107I GGYRCC 1 cut(s) 1268
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 456, 1139
BsrFI RCCGGY 2 cut(s) 1283, 1628
BsrI ACTGG 1 cut(s) 748
BssAI RCCGGY 2 cut(s) 1283, 1628
BssECI CCNNGG 4 cut(s) 190, 277, 288, 1588
BssNI GRCGYC 1 cut(s) 588
BssT1I CCWWGG 1 cut(s) 1588
Bst2UI CCWGG 4 cut(s) 289, 468, 929, 1575
Bst4CI ACNGT 5 cut(s) 607, 731, 1300, 1424, 1660
Bst6I CTCTTC 1 cut(s) 1712
BstACI GRCGYC 1 cut(s) 588
BstAPI GCANNNNNTGC 2 cut(s) 548, 625
BstC8I GCNNGC 5 cut(s) 645, 723, 868, 1450, 1634
BstDEI CTNAG 5 cut(s) 60, 297, 629, 787, 1034
BstMAI GTCTC 3 cut(s) 131, 1065, 1403
BstMCI CGRYCG 2 cut(s) 1100, 1513
BstMWI GCNNNNNNNGC 5 cut(s) 326, 548, 625, 1085, 1559
BstNI CCWGG 4 cut(s) 289, 468, 929, 1575
BstNSI RCATGY 2 cut(s) 643, 725
BstSCI CCNGG 4 cut(s) 287, 466, 927, 1573
BstSFI CTRYAG 3 cut(s) 132, 421, 1128
BstV1I GCAGC 3 cut(s) 307, 554, 1656
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 2 cut(s) 391, 1687
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 2 cut(s) 391, 1687
BsuRI GGCC 6 cut(s) 24, 231, 276, 1452, 1587, 1725
BtgZI GCGATG 1 cut(s) 582
BtsI GCAGTG 2 cut(s) 52, 978
BtsIMutI CAGTG 5 cut(s) 52, 603, 741, 978, 1217
Cac8I GCNNGC 5 cut(s) 645, 723, 868, 1450, 1634
CciI TCATGA 1 cut(s) 66
Cfr10I RCCGGY 2 cut(s) 1283, 1628
Cfr13I GGNCC 3 cut(s) 292, 1224, 1450
CseI GACGC 2 cut(s) 40, 577
Csp6I GTAC 2 cut(s) 76, 1269
CspAI ACCGGT 1 cut(s) 1283
CviQI GTAC 2 cut(s) 76, 1269
DdeI CTNAG 5 cut(s) 60, 297, 629, 787, 1034
DraI TTTAAA 2 cut(s) 1428, 1654
EaeI YGGCCR 2 cut(s) 22, 229
Eam1104I CTCTTC 1 cut(s) 1712
EarI CTCTTC 1 cut(s) 1712
Eco130I CCWWGG 1 cut(s) 1588
Eco47I GGWCC 2 cut(s) 292, 1224
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 1080
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 4 cut(s) 287, 466, 927, 1573
EcoT14I CCWWGG 1 cut(s) 1588
EcoT22I ATGCAT 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 1588
FaqI GGGAC 1 cut(s) 305
FauI CCCGC 2 cut(s) 981, 1441
FauNDI CATATG 3 cut(s) 358, 1402, 1534
FbaI TGATCA 2 cut(s) 879, 1663
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 6 cut(s) 100, 321, 522, 543, 1563, 1670
Fsp4HI GCNGC 6 cut(s) 100, 321, 522, 543, 1563, 1670
FspBI CTAG 3 cut(s) 498, 1547, 1753
GluI GCNGC 6 cut(s) 100, 321, 522, 543, 1563, 1670
GsuI CTGGAG 1 cut(s) 682
HaeIII GGCC 6 cut(s) 24, 231, 276, 1452, 1587, 1725
HapII CCGG 3 cut(s) 1284, 1509, 1629
HgaI GACGC 2 cut(s) 40, 577
Hin1I GRCGYC 1 cut(s) 588
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HindIII AAGCTT 2 cut(s) 126, 1634
HinfI GANTC 7 cut(s) 454, 711, 810, 1018, 1124, 1333, 1435
HpaII CCGG 3 cut(s) 1284, 1509, 1629
HphI GGTGA 7 cut(s) 166, 805, 810, 1133, 1430, 1618, 1625
Hpy166II GTNNAC 2 cut(s) 244, 1045
Hpy188I TCNGA 3 cut(s) 281, 459, 790
Hpy188III TCNNGA 8 cut(s) 67, 94, 498, 715, 1061, 1082, 1307, 1337
Hpy8I GTNNAC 2 cut(s) 244, 1045
HpyAV CCTTC 3 cut(s) 662, 1160, 1577
HpyCH4III ACNGT 5 cut(s) 607, 731, 1300, 1424, 1660
HpyCH4IV ACGT 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 548, 625, 1085, 1559
HpyF3I CTNAG 5 cut(s) 60, 297, 629, 787, 1034
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 588
KflI GGGWCCC 1 cut(s) 292
KpnI GGTACC 1 cut(s) 1272
Ksp22I TGATCA 2 cut(s) 879, 1663
LmnI GCTCC 2 cut(s) 281, 317
Lsp1109I GCAGC 3 cut(s) 307, 554, 1656
LweI GCATC 6 cut(s) 208, 708, 958, 1330, 1435, 1540
MaeI CTAG 3 cut(s) 498, 1547, 1753
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 5 cut(s) 145, 410, 739, 1418, 1613
MbiI CCGCTC 1 cut(s) 99
MboII GAAGA 5 cut(s) 322, 440, 1100, 1171, 1699
MflI RGATCY 2 cut(s) 391, 1687
MlsI TGGCCA 2 cut(s) 24, 231
MluCI AATT 5 cut(s) 660, 905, 960, 981, 1429
MluNI TGGCCA 2 cut(s) 24, 231
MlyI GAGTC 3 cut(s) 448, 720, 1429
MmeI TCCRAC 2 cut(s) 1202, 1552
Mox20I TGGCCA 2 cut(s) 24, 231
Mph1103I ATGCAT 1 cut(s) 723
MscI TGGCCA 2 cut(s) 24, 231
MseI TTAA 7 cut(s) 306, 753, 993, 1353, 1427, 1455, 1653
MslI CAYNNNNRTG 4 cut(s) 638, 875, 881, 950
Msp20I TGGCCA 2 cut(s) 24, 231
MspA1I CMGCKG 4 cut(s) 59, 524, 702, 1669
MspI CCGG 3 cut(s) 1284, 1509, 1629
MspR9I CCNGG 4 cut(s) 289, 468, 929, 1575
Mva1269I GAATGC 2 cut(s) 351, 633
MvaI CCWGG 4 cut(s) 289, 468, 929, 1575
MwoI GCNNNNNNNGC 5 cut(s) 326, 548, 625, 1085, 1559
NdeI CATATG 3 cut(s) 358, 1402, 1534
NlaIV GGNNCC 5 cut(s) 293, 294, 888, 1270, 1689
NmuCI GTSAC 3 cut(s) 739, 1418, 1613
NsiI ATGCAT 1 cut(s) 723
NspI RCATGY 2 cut(s) 643, 725
PaeI GCATGC 1 cut(s) 725
PagI TCATGA 1 cut(s) 66
PctI GAATGC 2 cut(s) 351, 633
PfeI GAWTC 4 cut(s) 810, 1018, 1124, 1333
PflMI CCANNNNNTGG 1 cut(s) 1233
PfoI TCCNGGA 1 cut(s) 1573
PinAI ACCGGT 1 cut(s) 1283
PkrI GCNGC 6 cut(s) 101, 322, 523, 544, 1564, 1671
Ple19I CGATCG 1 cut(s) 1100
PleI GAGTC 3 cut(s) 448, 719, 1429
PpsI GAGTC 3 cut(s) 448, 719, 1429
PpuMI RGGWCCY 1 cut(s) 292
PsiI TTATAA 1 cut(s) 1001
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 4 cut(s) 287, 466, 927, 1573
PspGI CCWGG 4 cut(s) 287, 466, 927, 1573
PspN4I GGNNCC 5 cut(s) 293, 294, 888, 1270, 1689
PspPI GGNCC 3 cut(s) 292, 1224, 1450
PspPPI RGGWCCY 1 cut(s) 292
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PstI CTGCAG 2 cut(s) 136, 1132
PsuI RGATCY 2 cut(s) 391, 1687
PvuI CGATCG 1 cut(s) 1100
PvuII CAGCTG 3 cut(s) 59, 702, 1669
RsaI GTAC 2 cut(s) 77, 1270
RsaNI GTAC 2 cut(s) 76, 1269
RseI CAYNNNNRTG 4 cut(s) 638, 875, 881, 950
SaqAI TTAA 7 cut(s) 306, 753, 993, 1353, 1427, 1455, 1653
SatI GCNGC 6 cut(s) 100, 321, 522, 543, 1563, 1670
Sau96I GGNCC 3 cut(s) 292, 1224, 1450
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 3 cut(s) 448, 720, 1429
ScrFI CCNGG 4 cut(s) 289, 468, 929, 1575
SfaNI GCATC 6 cut(s) 208, 708, 958, 1330, 1435, 1540
SfcI CTRYAG 3 cut(s) 132, 421, 1128
SinI GGWCC 2 cut(s) 292, 1224
SmiMI CAYNNNNRTG 4 cut(s) 638, 875, 881, 950
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SphI GCATGC 1 cut(s) 725
Sse9I AATT 5 cut(s) 660, 905, 960, 981, 1429
SspMI CTAG 3 cut(s) 498, 1547, 1753
StyD4I CCNGG 4 cut(s) 287, 466, 927, 1573
StyI CCWWGG 1 cut(s) 1588
TaaI ACNGT 5 cut(s) 607, 731, 1300, 1424, 1660
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 666, 845
TasI AATT 5 cut(s) 660, 905, 960, 981, 1429
TatI WGTACW 1 cut(s) 75
TauI GCSGC 3 cut(s) 102, 524, 1565
TfiI GAWTC 4 cut(s) 810, 1018, 1124, 1333
Tru1I TTAA 7 cut(s) 306, 753, 993, 1353, 1427, 1455, 1653
Tru9I TTAA 7 cut(s) 306, 753, 993, 1353, 1427, 1455, 1653
TscAI CASTG 5 cut(s) 52, 610, 748, 978, 1217
TseFI GTSAC 3 cut(s) 739, 1418, 1613
TseI GCWGC 3 cut(s) 320, 542, 1669
Tsp45I GTSAC 3 cut(s) 739, 1418, 1613
TspDTI ATGAA 4 cut(s) 83, 215, 898, 1691
TspGWI ACGGA 2 cut(s) 755, 1011
TspRI CASTG 5 cut(s) 52, 610, 748, 978, 1217
Van91I CCANNNNNTGG 1 cut(s) 1233
VpaK11BI GGWCC 2 cut(s) 292, 1224
XapI RAATTY 3 cut(s) 905, 981, 1429
XbaI TCTAGA 1 cut(s) 497
XceI RCATGY 2 cut(s) 643, 725
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 3 cut(s) 498, 1547, 1753
ZrmI AGTACT 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.