Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000924

Physical Location & Seq

Genomic Coordinates Forward (+)

15704508 .. 15705130

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTGTGCAAGTGATAATGTGCTTGTTTTTTTCTTTAGTGCCATTGCTATGTATAATGCACAGAGAGGCAGGAAAGGCAGGAGTTCAGTTCTGTGGAAGAATTTAGCGGGTATTCCTCCCCAACCTAGCTCTACGGAGTGTGGCTACTTCGTGATGAGATACATGCGAGATATAATTGAAGATAAGGATCTATCGTTTGTTCATAAGTGGGAGAGGAGAAGCAACTACATGTATAGCCAAGAGGACATTGATGTAATCCGGAATCAGTGGACAAAATTTGTCGTCAAGTCATATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

99

Amino Acids

11.75

Weight (kDa)

9.23

Isoelectric Point (pI)

69.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04885 AT5G04885 AT5G04885
fragaria_vesca	FvH4_1g28352 FvH4_1g28352 FvH4_1g28352 FvH4_4g26180 FvH4_4g26180 FvH4_7g05220 FvH4_7g05220
malus_domestica	MD02G1259600.v1.1 MD07G1060900.v1.1 MD11G1177800.v1.1 MD11G1177900.v1.1 MD14G1004200.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.6G150000_v2.0.a1 Prupe.6G150200_v2.0.a1 Prupe.6G150400_v2.0.a1 Prupe.6G150500_v2.0.a1 Prupe.7G007200_v2.0.a1
pyrus_communis	pycom14g00250
rosa_chinensis	RchiOBHm_Chr1g0331601 RchiOBHm_Chr3g0496681 RchiOBHm_Chr3g0496721 RchiOBHm_Chr4g0433771
rosa_laevigata	RLG00000006732 RLG00000022510 RLG00000022511 RLG00000029727 RLG00000034619
rosa_multiflora	Rmu_sc0005044.1_g000017 Rmu_sc0006176.1_g000006
rosa_roxburghii	Rroxscaffold_4G00319030 Rroxscaffold_5G00375200 Rroxscaffold_6G00388790 Rroxscaffold_6G00388830 Rroxscaffold_6G00388850
rosa_rugosa	Rorug01G0095000 Rorug01G0095100 Rorug01G0095200 Rorug03G0185800 Rorug03G0186000 Rorug03G0285500 Rorug03G0285700 Rorug04G0271300 Rorug05G0248600 Rorug06G0034700
rosa_samantha	Rh1AG118800 Rh1CG113800 Rh3AG330600 Rh3BG366600 Rh3CG363300 Rh3CG363500 Rh4AG326000 Rh4CG349100 Rh5AG325000
rosa_wichuraiana	Rw1G009560 Rw3G028940 Rw3G028950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	100, 275
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	179
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
AlwI	GGATC	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	258
ApoI	RAATTY	2 cut(s)	100, 275
BfaI	CTAG	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	258
BseJI	GATNNNNATC	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	258
BspPI	GGATC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	42
BssMI	GATC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	166, 232
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	272
CviAII	CATG	2 cut(s)	163, 229
CviJI	RGCY	3 cut(s)	129, 144, 237
CviKI_1	RGCY	3 cut(s)	129, 144, 237
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
FaeI	CATG	2 cut(s)	166, 232
FatI	CATG	2 cut(s)	162, 228
FauI	CCCGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	126
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	2 cut(s)	166, 232
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	151, 259
Hpy8I	GTNNAC	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	8, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	166, 232
Kpn2I	TCCGGA	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	3 cut(s)	55, 64, 272
MaeI	CTAG	1 cut(s)	126
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	109, 191
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	3 cut(s)	100, 174, 275
MnlI	CCTC	4 cut(s)	59, 126, 207, 235
MroI	TCCGGA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	166, 232
NspI	RCATGY	2 cut(s)	166, 232
PciI	ACATGT	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	262
PscI	ACATGT	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	187
SetI	ASST	2 cut(s)	127, 131
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	100, 174, 275
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	126
TasI	AATT	3 cut(s)	100, 174, 275
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	100, 275
XceI	RCATGY	2 cut(s)	166, 232
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.