Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000924

Physical Location & Seq

Genomic Coordinates Reverse (-)

16109874 .. 16111168

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0186000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGTTCAGAAACCTGTGCATGCCAAAATTCAGGGGTGAATCAACTTCCTAGACCCACAAGGCCGATAAGCAGCTACGGCATGGCTACGATGTCTTCATTGCCTTCATCTTTTCCTCATCCCACAAGACCAGTTAGCATAGACCAATACAATGCTCAACAAGTTGGTTATGATGAAACTTTTGTCCATGGGGCACAACCAACTGAAGAGGAAGATAGGGAAGGTCTTGATGGATTGCTTGGGTTCTTGTCAGAGCTTATTGAAAAAGTTCCTGCAAAACTAGAACACATATTACTTGATAAATATATGGATCATAGAGAAAATGAAGGTCCTGTCATTGTGGAAAGGGGTACTACTACTACTAGTCGCGGTCTTCAAGGAACTGGGGAATCATCACCAAAGCTTGAGCGCTTCAAGATCCGAACTGTGGATTTTGGGGATGATGTCGAGGAGGAAGAGAACGTGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

157

Amino Acids

17.47

Weight (kDa)

4.78

Isoelectric Point (pI)

62.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04885 AT5G04885 AT5G04885
fragaria_vesca	FvH4_1g28352 FvH4_1g28352 FvH4_1g28352 FvH4_4g26180 FvH4_4g26180 FvH4_7g05220 FvH4_7g05220
malus_domestica	MD02G1259600.v1.1 MD07G1060900.v1.1 MD11G1177800.v1.1 MD11G1177900.v1.1 MD14G1004200.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.6G150000_v2.0.a1 Prupe.6G150200_v2.0.a1 Prupe.6G150400_v2.0.a1 Prupe.6G150500_v2.0.a1 Prupe.7G007200_v2.0.a1
pyrus_communis	pycom14g00250
rosa_chinensis	RchiOBHm_Chr1g0331601 RchiOBHm_Chr3g0496681 RchiOBHm_Chr3g0496721 RchiOBHm_Chr4g0433771
rosa_laevigata	RLG00000006732 RLG00000022510 RLG00000022511 RLG00000029727 RLG00000034619
rosa_multiflora	Rmu_sc0005044.1_g000017 Rmu_sc0006176.1_g000006
rosa_roxburghii	Rroxscaffold_4G00319030 Rroxscaffold_5G00375200 Rroxscaffold_6G00388790 Rroxscaffold_6G00388830 Rroxscaffold_6G00388850
rosa_rugosa	Rorug01G0095000 Rorug01G0095100 Rorug01G0095200 Rorug03G0185800 Rorug03G0186000 Rorug03G0285500 Rorug03G0285700 Rorug04G0271300 Rorug05G0248600 Rorug06G0034700
rosa_samantha	Rh1AG118800 Rh1CG113800 Rh3AG330600 Rh3BG366600 Rh3CG363300 Rh3CG363500 Rh4AG326000 Rh4CG349100 Rh5AG325000
rosa_wichuraiana	Rw1G009560 Rw3G028940 Rw3G028950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	369
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	2 cut(s)	318, 412
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	352
AfeI	AGCGCT	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	263, 377, 415
AhlI	ACTAGT	1 cut(s)	362
AluBI	AGCT	3 cut(s)	75, 256, 403
AluI	AGCT	3 cut(s)	75, 256, 403
AlwI	GGATC	2 cut(s)	318, 412
Aor51HI	AGCGCT	1 cut(s)	410
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	49, 387
AvaII	GGWCC	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	87, 365
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	94
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	3 cut(s)	51, 281, 363
BfoI	RGCGCY	1 cut(s)	412
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	87, 365
BpuEI	CTTGAG	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	131, 388
Bse3DI	GCAATG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	118, 445
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	131, 388
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	427
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	310, 417
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	369
BspPI	GGATC	2 cut(s)	318, 412
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	131, 388
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	310, 417
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	2 cut(s)	201, 450
BstC8I	GCNNGC	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	118, 445
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	2 cut(s)	313, 420
BstMBI	GATC	2 cut(s)	310, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	2 cut(s)	87, 365
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	118, 445
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	411
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	3 cut(s)	21, 82, 188
CviJI	RGCY	5 cut(s)	64, 75, 86, 256, 403
CviKI_1	RGCY	5 cut(s)	64, 75, 86, 256, 403
CviQI	GTAC	1 cut(s)	351
DpnI	GATC	2 cut(s)	312, 419
DpnII	GATC	2 cut(s)	310, 417
Eam1104I	CTCTTC	2 cut(s)	201, 450
EarI	CTCTTC	2 cut(s)	201, 450
Eco130I	CCWWGG	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	329
Eco47III	AGCGCT	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	24, 85, 191
FaiI	YATR	9 cut(s)	22, 83, 140, 171, 189, 290, 306, 308, 315
FatI	CATG	3 cut(s)	20, 81, 187
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	105, 452
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	3 cut(s)	51, 281, 363
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	24, 85, 191
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	40, 389
HphI	GGTGA	2 cut(s)	49, 387
Hpy188I	TCNGA	3 cut(s)	10, 253, 422
Hpy188III	TCNNGA	2 cut(s)	227, 415
HpyAV	CCTTC	3 cut(s)	114, 215, 320
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	2 cut(s)	20, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	24, 85, 191
HspAI	GCGC	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	310, 417
LpnPI	CCDG	6 cut(s)	18, 28, 144, 285, 345, 369
Lsp1109I	GCAGC	1 cut(s)	84
MaeI	CTAG	3 cut(s)	51, 281, 363
MaeII	ACGT	1 cut(s)	462
MalI	GATC	2 cut(s)	312, 419
MboI	GATC	2 cut(s)	310, 417
MboII	GAAGA	5 cut(s)	87, 218, 224, 365, 467
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	4 cut(s)	126, 202, 442, 445
MroXI	GAANNNNTTC	1 cut(s)	267
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	310, 417
NlaIII	CATG	3 cut(s)	24, 85, 191
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	40, 389
PkrI	GCNGC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	329
PspPPI	RGGWCCY	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	276, 308
PsuI	RGATCY	1 cut(s)	417
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	310, 417
Sau96I	GGNCC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	7 cut(s)	17, 77, 226, 258, 331, 405, 465
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SpeI	ACTAGT	1 cut(s)	362
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	3 cut(s)	51, 281, 363
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	447
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	40, 389
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	4 cut(s)	87, 96, 189, 339
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	3 cut(s)	51, 281, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.