Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000924

Physical Location & Seq

Genomic Coordinates Reverse (-)

15754491 .. 15756443

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0095200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGATTCAAAGCCTTTGCCGGGGGCCAAGTTAAAGAGTACATTGCCACCACGGCCGCCGCAGTCAAATCCTCTCAAACGGAAGCTTGGGATGATTCCTAAGAACTCCGTCCATGGAGCCTTTGATTCCAGTGTCCAGGTACTACTCTATTTCTTGACCGACCTAAATCTCTTTGTCGGAAACCTTCCCTTCACTGTTGATAGTGCTCAGGTAGTTGAGCTCTTCGAAGGTGCTGGGAATGTTGAGATGGTCGAGGTTATGCATGACAAGACTACTGGGAGAAGCAGAGGATTTGGGTTTGTGTCTCACCATTTGGGATCACGAAATTTCGCGTTTGGTGGATTGAAAGATTTCAGTGGTAGTTTTGAAAGCGCGGAGCTTTCGGTGATTCTGTGCAATGATGAGTGTATGAGAAAACGTAACAAGGAATGGAGAGATGAGGACCGTGCTACTGGTGTTGTTTCCAAGTCCAAGCATGTGCCTGGTCTTAAGATTCCAAATGTTGTGTTGGGTGACATTGTGATTTCTATTGAGATGGCGGCAAGGCAAGCAGAGCAAAGAGGCCACACACTTCTTGATGAGATGCGCCTTCTCATGATAACATTCTTCATTGAGCTTTTTGGGCCTGCAACGAAGTTCGAAGCCTTATTGGTTAATAGCAGTTGGAAATTGGAATTGAAAGCAACTCTCTTCTCATCCAATTTCACGACCAATAACATTCAAGATTATTGGATAGAAGTGTCTGCTGCTATGGTGAATGTGGTTCCCTCAGCTGGGGTATTTGGTGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

264

Amino Acids

29.16

Weight (kDa)

6.61

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	57 - 102	1.9e-11	RNA recognition motif
YbeY	PF02130	123 - 201	3.1e-14	Endoribonuclease YbeY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04885 AT5G04885 AT5G04885
fragaria_vesca	FvH4_1g28352 FvH4_1g28352 FvH4_1g28352 FvH4_4g26180 FvH4_4g26180 FvH4_7g05220 FvH4_7g05220
malus_domestica	MD02G1259600.v1.1 MD07G1060900.v1.1 MD11G1177800.v1.1 MD11G1177900.v1.1 MD14G1004200.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.6G150000_v2.0.a1 Prupe.6G150200_v2.0.a1 Prupe.6G150400_v2.0.a1 Prupe.6G150500_v2.0.a1 Prupe.7G007200_v2.0.a1
pyrus_communis	pycom14g00250
rosa_chinensis	RchiOBHm_Chr1g0331601 RchiOBHm_Chr3g0496681 RchiOBHm_Chr3g0496721 RchiOBHm_Chr4g0433771
rosa_laevigata	RLG00000006732 RLG00000022510 RLG00000022511 RLG00000029727 RLG00000034619
rosa_multiflora	Rmu_sc0005044.1_g000017 Rmu_sc0006176.1_g000006
rosa_roxburghii	Rroxscaffold_4G00319030 Rroxscaffold_5G00375200 Rroxscaffold_6G00388790 Rroxscaffold_6G00388830 Rroxscaffold_6G00388850
rosa_rugosa	Rorug01G0095000 Rorug01G0095100 Rorug01G0095200 Rorug03G0185800 Rorug03G0186000 Rorug03G0285500 Rorug03G0285700 Rorug04G0271300 Rorug05G0248600 Rorug06G0034700
rosa_samantha	Rh1AG118800 Rh1CG113800 Rh3AG330600 Rh3BG366600 Rh3CG363300 Rh3CG363500 Rh4AG326000 Rh4CG349100 Rh5AG325000
rosa_wichuraiana	Rw1G009560 Rw3G028940 Rw3G028950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	332, 374
AciI	CCGC	4 cut(s)	56, 59, 374, 539
AclWI	GGATC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	2 cut(s)	40, 141
AfiI	CCNNNNNNNGG	3 cut(s)	20, 773, 774
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	9, 346, 368, 679, 722
AjnI	CCWGG	2 cut(s)	135, 481
AluBI	AGCT	5 cut(s)	85, 220, 379, 616, 773
AluI	AGCT	5 cut(s)	85, 220, 379, 616, 773
Alw21I	GWGCWC	2 cut(s)	208, 222
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	4 cut(s)	24, 53, 562, 623
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	374, 588
AspS9I	GGNCC	3 cut(s)	24, 442, 623
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	4 cut(s)	299, 397, 524, 766
AsuII	TTCGAA	2 cut(s)	225, 639
AvaII	GGWCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	208, 222
BbvCI	CCTCAGC	1 cut(s)	769
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	2 cut(s)	241, 529
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	137, 483
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	309
BfrI	CTTAAG	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	56, 59, 540, 747
BlsI	GCNGC	4 cut(s)	57, 60, 541, 748
Bme1390I	CCNGG	3 cut(s)	21, 137, 483
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	3 cut(s)	24, 442, 623
BmiI	GGNNCC	3 cut(s)	25, 118, 765
BmrFI	CCNGG	3 cut(s)	21, 137, 483
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	285
Bpu10I	CCTNAGC	2 cut(s)	207, 769
Bpu14I	TTCGAA	2 cut(s)	225, 639
BpuMI	CCSGG	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	20, 50, 112
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 773, 774
Bse1I	ACTGG	3 cut(s)	129, 280, 457
Bse3DI	GCAATG	2 cut(s)	41, 403
BseBI	CCWGG	2 cut(s)	137, 483
BseDI	CCNNGG	3 cut(s)	20, 50, 112
BseGI	GGATG	2 cut(s)	96, 695
BseLI	CCNNNNNNNGG	3 cut(s)	20, 773, 774
BseMI	GCAATG	2 cut(s)	41, 403
BseMII	CTCAG	2 cut(s)	221, 783
BseNI	ACTGG	3 cut(s)	129, 280, 457
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	733
BseYI	CCCAGC	2 cut(s)	233, 773
Bsh1236I	CGCG	2 cut(s)	332, 374
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	4 cut(s)	26, 55, 564, 625
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	208, 222
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	3 cut(s)	20, 773, 774
BsmAI	GTCTC	1 cut(s)	309
BsnI	GGCC	4 cut(s)	26, 55, 564, 625
Bsp119I	TTCGAA	2 cut(s)	225, 639
Bsp1286I	GDGCHC	2 cut(s)	208, 222
Bsp143I	GATC	1 cut(s)	317
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	4 cut(s)	56, 59, 374, 539
BspANI	GGCC	4 cut(s)	26, 55, 564, 625
BspCNI	CTCAG	2 cut(s)	220, 782
BspFNI	CGCG	2 cut(s)	332, 374
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	3 cut(s)	25, 118, 765
BspPI	GGATC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	227
BspT104I	TTCGAA	2 cut(s)	225, 639
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	2 cut(s)	41, 403
BsrI	ACTGG	3 cut(s)	129, 280, 457
BssECI	CCNNGG	3 cut(s)	20, 50, 112
BssMI	GATC	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	137, 483
Bst4CI	ACNGT	2 cut(s)	196, 446
Bst6I	CTCTTC	2 cut(s)	227, 695
BstAFI	CTTAAG	1 cut(s)	488
BstBI	TTCGAA	2 cut(s)	225, 639
BstC8I	GCNNGC	2 cut(s)	549, 627
BstDEI	CTNAG	3 cut(s)	99, 207, 769
BstDSI	CCRYGG	2 cut(s)	50, 112
BstF5I	GGATG	2 cut(s)	96, 695
BstFNI	CGCG	2 cut(s)	332, 374
BstHHI	GCGC	2 cut(s)	374, 588
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	317
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 548, 553, 622
BstNI	CCWGG	2 cut(s)	137, 483
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	19, 135, 481
BstUI	CGCG	2 cut(s)	332, 374
BstV1I	GCAGC	1 cut(s)	733
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	4 cut(s)	26, 55, 564, 625
BtgI	CCRYGG	2 cut(s)	50, 112
BtsCI	GGATG	2 cut(s)	96, 695
BtsIMutI	CAGTG	3 cut(s)	136, 192, 361
Cac8I	GCNNGC	2 cut(s)	549, 627
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	2 cut(s)	374, 588
Cfr13I	GGNCC	3 cut(s)	24, 442, 623
Csp6I	GTAC	2 cut(s)	39, 140
CviAII	CATG	4 cut(s)	113, 263, 476, 595
CviQI	GTAC	2 cut(s)	39, 140
DdeI	CTNAG	3 cut(s)	99, 207, 769
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	53
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	227, 695
EarI	CTCTTC	2 cut(s)	227, 695
Ecl136II	GAGCTC	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	442
Eco52I	CGGCCG	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	135, 481
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	4 cut(s)	116, 266, 479, 598
FaiI	YATR	7 cut(s)	114, 260, 264, 410, 477, 596, 752
FatI	CATG	4 cut(s)	112, 262, 475, 594
Fnu4HI	GCNGC	4 cut(s)	56, 59, 540, 747
FokI	GGATG	2 cut(s)	103, 682
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	56, 59, 540, 747
GlaI	GCGC	2 cut(s)	373, 587
GluI	GCNGC	4 cut(s)	56, 59, 540, 747
GsaI	CCCAGC	2 cut(s)	237, 777
HaeIII	GGCC	4 cut(s)	26, 55, 564, 625
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	2 cut(s)	374, 588
Hin1II	CATG	4 cut(s)	116, 266, 479, 598
Hin6I	GCGC	2 cut(s)	372, 586
HinP1I	GCGC	2 cut(s)	372, 586
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	5 cut(s)	5, 94, 125, 388, 493
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	4 cut(s)	299, 397, 524, 766
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	6 cut(s)	154, 321, 575, 595, 706, 722
HpyAV	CCTTC	4 cut(s)	194, 199, 221, 599
HpyCH4III	ACNGT	2 cut(s)	196, 446
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	3 cut(s)	262, 396, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 548, 553, 622
HpyF3I	CTNAG	3 cut(s)	99, 207, 769
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	4 cut(s)	116, 266, 479, 598
HspAI	GCGC	2 cut(s)	372, 586
Kzo9I	GATC	1 cut(s)	317
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	2 cut(s)	116, 376
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	1 cut(s)	573
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	419, 512
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	3 cut(s)	214, 598, 682
MhlI	GDGCHC	2 cut(s)	208, 222
MluCI	AATT	4 cut(s)	325, 668, 674, 700
MmeI	TCCRAC	2 cut(s)	157, 644
MnlI	CCTC	6 cut(s)	81, 247, 281, 433, 554, 778
Mph1103I	ATGCAT	1 cut(s)	264
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	3 cut(s)	32, 489, 654
MspA1I	CMGCKG	1 cut(s)	773
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	3 cut(s)	21, 137, 483
MvaI	CCWGG	2 cut(s)	137, 483
MvnI	CGCG	2 cut(s)	332, 374
MwoI	GCNNNNNNNGC	4 cut(s)	52, 548, 553, 622
NciI	CCSGG	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	4 cut(s)	116, 266, 479, 598
NlaIV	GGNNCC	3 cut(s)	25, 118, 765
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	1 cut(s)	479
NspV	TTCGAA	2 cut(s)	225, 639
PagI	TCATGA	1 cut(s)	594
PciSI	GCTCTTC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	5 cut(s)	5, 94, 125, 388, 493
PkrI	GCNGC	4 cut(s)	57, 60, 541, 748
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	135, 481
PspFI	CCCAGC	2 cut(s)	233, 773
PspGI	CCWGG	2 cut(s)	135, 481
PspN4I	GGNNCC	3 cut(s)	25, 118, 765
PspPI	GGNCC	3 cut(s)	24, 442, 623
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	40, 141
RsaNI	GTAC	2 cut(s)	39, 140
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	32, 489, 654
SatI	GCNGC	4 cut(s)	56, 59, 540, 747
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	3 cut(s)	24, 442, 623
ScrFI	CCNGG	3 cut(s)	21, 137, 483
SduI	GDGCHC	2 cut(s)	208, 222
SfaNI	GCATC	1 cut(s)	573
SfuI	TTCGAA	2 cut(s)	225, 639
SinI	GGWCC	1 cut(s)	442
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	4 cut(s)	325, 668, 674, 700
SsiI	CCGC	4 cut(s)	56, 59, 374, 539
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	19, 135, 481
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	196, 446
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	3 cut(s)	225, 252, 639
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	4 cut(s)	325, 668, 674, 700
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	3 cut(s)	58, 61, 542
TfiI	GAWTC	5 cut(s)	5, 94, 125, 388, 493
Tru1I	TTAA	3 cut(s)	32, 489, 654
Tru9I	TTAA	3 cut(s)	32, 489, 654
TscAI	CASTG	3 cut(s)	136, 199, 361
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	1 cut(s)	598
TspGWI	ACGGA	2 cut(s)	94, 97
TspRI	CASTG	3 cut(s)	136, 199, 361
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.