Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000924

Physical Location & Seq

Genomic Coordinates Reverse (-)

4325715 .. 4340577

Gene Structure 14863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTTTAAGCTGTCTCGCAGACAGTCCTACTCTTCCTTGCTCGATCTTAAGTGCAATCTGCAACAAGGGATGGAGGGAAATCCTATTGCTAAAATCATCCAACCCATCGATATGATGAAGTTGAGAATTCAATTGGGTCTGGGATCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTTGGTTCATTGTATAAGTGCTGGATGTGTTGGATGAGGAATTTATATCTGTTTGAGGTCTCGAATTTTATATTCTTCATGCCAATCAGATACGTATTCCTTTCCATTAAAATGGGGACTGTTAGATTGGCTGAGACATTAATATATGGATTGGTAAAGATCAGTTGGGGCAAATGGAAGATTCAATTCGAGAATCGCGTAACCAGATTCAAACACATAAGTGTTATGAACCTCTTCGGTGTTCTCAAGTATAAGAAGATGGGGGAAGACGTTCTTTGTAATTCTGGTCTACCATTTACAATAATCAGGGCTGGTAGATTGACAGATGGACCTTACACATCATATGATCTTAATACATTGCTCAAAGCTACAGCTGGCCAACGATGTGCAGTCTTAATAGGTCAAGGAGATACACTAGTTGGAGAGGTTAGCAGACTTGTTGTTGCTGAAGCTTGCATACAGGCGCTGGACATAAAATGCACTGAAGGAAAAATATTTGAAGTCAACTCAGTTGAGCTGATCAAGATGGAGGCTGATATCCTCCTATCTCTGAAATTTGAAATGGGAAATCTCAATGTTGCTACATCCTTGAGAAAATTCATTGATCTTGCTCAAGGGAGTTACTACAAAGTTCTTATTTTGCCAAGGGCAGATCATTGGAGTTCCTGTAGCTTTGCATCTATTCAAGTAGCCTTTTATTATATACAATTTATTGGCAAAGTCTTGGTCTTACTTTTGCCTCAGTCTTGGTCTTACATGCATCAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

318

Amino Acids

36.19

Weight (kDa)

9.35

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_10	PF13460	135 - 219	3.6e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04885 AT5G04885 AT5G04885
fragaria_vesca	FvH4_1g28352 FvH4_1g28352 FvH4_1g28352 FvH4_4g26180 FvH4_4g26180 FvH4_7g05220 FvH4_7g05220
malus_domestica	MD02G1259600.v1.1 MD07G1060900.v1.1 MD11G1177800.v1.1 MD11G1177900.v1.1 MD14G1004200.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.6G150000_v2.0.a1 Prupe.6G150200_v2.0.a1 Prupe.6G150400_v2.0.a1 Prupe.6G150500_v2.0.a1 Prupe.7G007200_v2.0.a1
pyrus_communis	pycom14g00250
rosa_chinensis	RchiOBHm_Chr1g0331601 RchiOBHm_Chr3g0496681 RchiOBHm_Chr3g0496721 RchiOBHm_Chr4g0433771
rosa_laevigata	RLG00000006732 RLG00000022510 RLG00000022511 RLG00000029727 RLG00000034619
rosa_multiflora	Rmu_sc0005044.1_g000017 Rmu_sc0006176.1_g000006
rosa_roxburghii	Rroxscaffold_4G00319030 Rroxscaffold_5G00375200 Rroxscaffold_6G00388790 Rroxscaffold_6G00388830 Rroxscaffold_6G00388850
rosa_rugosa	Rorug01G0095000 Rorug01G0095100 Rorug01G0095200 Rorug03G0185800 Rorug03G0186000 Rorug03G0285500 Rorug03G0285700 Rorug04G0271300 Rorug05G0248600 Rorug06G0034700
rosa_samantha	Rh1AG118800 Rh1CG113800 Rh3AG330600 Rh3BG366600 Rh3CG363300 Rh3CG363500 Rh4AG326000 Rh4CG349100 Rh5AG325000
rosa_wichuraiana	Rw1G009560 Rw3G028940 Rw3G028950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	475
AccII	CGCG	1 cut(s)	384
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	5 cut(s)	126, 226, 250, 740, 782
AcuI	CTGAAG	2 cut(s)	654, 690
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	6 cut(s)	131, 371, 397, 686, 746, 872
AhlI	ACTAGT	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	161
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	7 cut(s)	10, 149, 554, 560, 638, 703, 858
AluI	AGCT	7 cut(s)	10, 149, 554, 560, 638, 703, 858
Alw26I	GTCTC	3 cut(s)	18, 250, 314
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	652
AoxI	GGCC	1 cut(s)	562
ApoI	RAATTY	5 cut(s)	126, 226, 250, 740, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	897, 929
AseI	ATTAAT	1 cut(s)	326
Asp700I	GAANNNNTTC	2 cut(s)	419, 456
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	2 cut(s)	165, 515
AvaII	GGWCC	2 cut(s)	165, 515
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BalI	TGGCCA	1 cut(s)	564
BarI	GAAGNNNNNNTAC	2 cut(s)	627, 659
BbsI	GAAGAC	1 cut(s)	459
BccI	CCATC	5 cut(s)	64, 113, 439, 506, 706
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	2 cut(s)	171, 705
BcoDI	GTCTC	3 cut(s)	18, 250, 314
BcuI	ACTAGT	1 cut(s)	601
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	2 cut(s)	555, 853
BfoI	RGCGCY	1 cut(s)	653
BfrI	CTTAAG	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	165, 515
BmgT120I	GGNCC	2 cut(s)	165, 515
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	872
BpiI	GAAGAC	1 cut(s)	459
BpuEI	CTTGAG	3 cut(s)	416, 783, 796
Bsa29I	ATCGAT	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	830
BsaXI	ACNNNNNCTCC	2 cut(s)	838, 868
Bse3DI	GCAATG	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	830
BseGI	GGATG	5 cut(s)	75, 96, 216, 225, 770
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	3 cut(s)	309, 708, 941
BseRI	GAGGAG	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	564
BshVI	ATCGAT	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	3 cut(s)	18, 250, 314
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	564
Bso31I	GGTCTC	1 cut(s)	250
Bsp143I	GATC	8 cut(s)	43, 143, 171, 345, 532, 705, 790, 838
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	3 cut(s)	310, 707, 940
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	151
BspTI	CTTAAG	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	542
BssECI	CCNNGG	1 cut(s)	830
BssMI	GATC	8 cut(s)	43, 143, 171, 345, 532, 705, 790, 838
BssT1I	CCWWGG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	24, 307
Bst6I	CTCTTC	2 cut(s)	37, 425
BstAFI	CTTAAG	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	562, 640
BstDEI	CTNAG	3 cut(s)	318, 694, 927
BstF5I	GGATG	5 cut(s)	75, 96, 216, 225, 770
BstFNI	CGCG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	8 cut(s)	46, 146, 174, 348, 535, 708, 793, 841
BstMAI	GTCTC	3 cut(s)	18, 250, 314
BstMBI	GATC	8 cut(s)	43, 143, 171, 345, 532, 705, 790, 838
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	555, 853
BstSNI	TACGTA	1 cut(s)	280
BstUI	CGCG	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	298
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	564
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	5 cut(s)	75, 96, 216, 225, 770
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	562, 640
CaiI	CAGNNNCTG	1 cut(s)	652
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	165, 515
ClaI	ATCGAT	1 cut(s)	108
CviAII	CATG	3 cut(s)	169, 265, 943
DdeI	CTNAG	3 cut(s)	318, 694, 927
DpnI	GATC	8 cut(s)	45, 145, 173, 347, 534, 707, 792, 840
DpnII	GATC	8 cut(s)	43, 143, 171, 345, 532, 705, 790, 838
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	37, 425
EarI	CTCTTC	2 cut(s)	37, 425
Eco105I	TACGTA	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	830
Eco31I	GGTCTC	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	2 cut(s)	165, 515
Eco57I	CTGAAG	2 cut(s)	654, 690
EcoRI	GAATTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	161
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	830
EcoT22I	ATGCAT	1 cut(s)	948
ErhI	CCWWGG	1 cut(s)	830
FaeI	CATG	3 cut(s)	172, 268, 946
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	168, 264, 942
FauNDI	CATATG	1 cut(s)	529
FbaI	TGATCA	2 cut(s)	171, 705
FblI	GTMKAC	1 cut(s)	475
FokI	GGATG	5 cut(s)	82, 83, 223, 232, 757
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	1 cut(s)	564
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	3 cut(s)	172, 268, 946
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	3 cut(s)	367, 379, 393
Hpy166II	GTNNAC	2 cut(s)	476, 691
Hpy188I	TCNGA	2 cut(s)	275, 738
Hpy188III	TCNNGA	3 cut(s)	247, 376, 709
Hpy8I	GTNNAC	2 cut(s)	476, 691
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	2 cut(s)	24, 307
HpyCH4IV	ACGT	2 cut(s)	279, 456
HpyCH4V	TGCA	7 cut(s)	54, 61, 575, 642, 666, 863, 946
HpyF3I	CTNAG	3 cut(s)	318, 694, 927
HpySE526I	ACGT	2 cut(s)	279, 456
Hsp92II	CATG	3 cut(s)	172, 268, 946
HspAI	GCGC	1 cut(s)	650
Ksp22I	TGATCA	2 cut(s)	171, 705
Kzo9I	GATC	8 cut(s)	43, 143, 171, 345, 532, 705, 790, 838
LweI	GCATC	1 cut(s)	872
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	2 cut(s)	279, 456
MaeIII	GTNAC	2 cut(s)	385, 806
MalI	GATC	8 cut(s)	45, 145, 173, 347, 534, 707, 792, 840
MboI	GATC	8 cut(s)	43, 143, 171, 345, 532, 705, 790, 838
MboII	GAAGA	6 cut(s)	24, 253, 376, 412, 454, 464
MfeI	CAATTG	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	9 cut(s)	126, 131, 226, 250, 371, 466, 740, 782, 893
MluNI	TGGCCA	1 cut(s)	564
MmeI	TCCRAC	3 cut(s)	124, 197, 586
Mox20I	TGGCCA	1 cut(s)	564
Mph1103I	ATGCAT	1 cut(s)	948
MroXI	GAANNNNTTC	2 cut(s)	419, 456
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	7 cut(s)	6, 48, 294, 326, 537, 581, 955
MslI	CAYNNNNRTG	3 cut(s)	110, 296, 405
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	2 cut(s)	149, 560
MspCI	CTTAAG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	384
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	8 cut(s)	43, 143, 171, 345, 532, 705, 790, 838
NlaIII	CATG	3 cut(s)	172, 268, 946
NsiI	ATGCAT	1 cut(s)	948
NspI	RCATGY	1 cut(s)	946
OliI	CACNNNNGTG	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdmI	GAANNNNTTC	2 cut(s)	419, 456
PfeI	GAWTC	3 cut(s)	367, 379, 393
Ppu21I	YACGTR	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	165, 515
PstNI	CAGNNNCTG	1 cut(s)	652
PvuII	CAGCTG	2 cut(s)	149, 560
RseI	CAYNNNNRTG	3 cut(s)	110, 296, 405
SaqAI	TTAA	7 cut(s)	6, 48, 294, 326, 537, 581, 955
Sau3AI	GATC	8 cut(s)	43, 143, 171, 345, 532, 705, 790, 838
Sau96I	GGNCC	2 cut(s)	165, 515
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	872
SfcI	CTRYAG	2 cut(s)	555, 853
SinI	GGWCC	2 cut(s)	165, 515
SmiMI	CAYNNNNRTG	3 cut(s)	110, 296, 405
SmlI	CTYRAG	4 cut(s)	47, 431, 775, 798
SmoI	CTYRAG	4 cut(s)	47, 431, 775, 798
SnaBI	TACGTA	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	601
Sse9I	AATT	9 cut(s)	126, 131, 226, 250, 371, 466, 740, 782, 893
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	2 cut(s)	24, 307
TaiI	ACGT	2 cut(s)	282, 459
TaqI	TCGA	4 cut(s)	42, 108, 248, 375
TasI	AATT	9 cut(s)	126, 131, 226, 250, 371, 466, 740, 782, 893
TfiI	GAWTC	3 cut(s)	367, 379, 393
Tru1I	TTAA	7 cut(s)	6, 48, 294, 326, 537, 581, 955
Tru9I	TTAA	7 cut(s)	6, 48, 294, 326, 537, 581, 955
TscAI	CASTG	1 cut(s)	673
TspDTI	ATGAA	5 cut(s)	131, 183, 253, 428, 775
TspRI	CASTG	1 cut(s)	673
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	165, 515
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	5 cut(s)	126, 226, 250, 740, 782
XceI	RCATGY	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	475
XmnI	GAANNNNTTC	2 cut(s)	419, 456
XspI	CTAG	1 cut(s)	602
Zsp2I	ATGCAT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.