Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000924

Physical Location & Seq

Genomic Coordinates Forward (+)

45433291 .. 45465449

Gene Structure 32159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG366600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGTCTGCCTCCTTGACGAGGGCACTTCTTCTGTTATGCTTGTGTATAGCAGCGGCGACTATGAGAACAGCAGAAGCAGCAGGTGGTGGAGGATACATGAAATATAAGGACCCCAAACAGCCCTTGAATACTAGAATCAATGACCTACTGAGCCGGATGACTTTGGAGGAAAAGATTGGCCAGATGACGCAGATAGAGCGCATTGTTGCTTCAGCTGAGGTCATGAACAAGTACTACATTGGGAGTGTGTTTAGCGGCGCTGTGAGTGTGCCATCAGAAAAAGATTCTGCAGAAACTTGGGTTACAATGGTGAATGATTTTCAAAAGGGTTCTCTATCAACTCGCCTTGGTATTCCAATGATTTATGGTATTGATGCTGTTCATGGCCACAATAATGTCTACAAGGCAACAATCTTTCCTCACAATGTTGGCCTTGGAGCTACCAGGGACCCTGAACTTGTTAAAAGGATTGGAGCTGCAACTGCACTTGAAGTTAGAGCCACAGGCATTCCATACGTCTTTGCACCTTGCATAGCGGTTTGTAGAGATCCAAGATGGGGTCGTTGTTACGAAAGCTACAGTGAAGATCATAAGGTTGTTCAAGCAATGACTCAGATCATACCTGGATTACAAGGAGACATACCACCTAGCTCTAGAAAGGGTGTTCCCTTTGTAGCAACTGGAAATAAAAAGGTTGCAGCCTGTGCAAAGCATTATGTGGGCGATGGTGGAACAACCAAAGGCATCGATGAGGATAACACTGTAATAAACAGGCATGGGTTACTCAGCATTCACATGCCACCCTACTATAACTCAATTATCGAAGGTGTTGCAACCATTATGGTATCTTACTCCAGCTGGAATGGAGTCAAGATGCATGCTAACCGTGATCTTGTCACTGGCTTTCTTAAGAATACTCTCCGTTTCAGGGGTTTTGTCATCTCAGATTTCATGGGTATTGACAGAATTACCTCACCAGCTTATGCCAACTACTCATACTCAATTACAGCAGGGATCAATGCTGGCATTGACATGATCATGGTTCCGTACAACTATACGGAATTCATTGATGGTCTAACTTTCCAGGCAAAAAATAAAATCATTCCCATGAGCAGAATTGATGATGCAGTGAGGAGAATTTTGCGGGTTAAGTTTATAATGGGGCTATTTGAGAATCCGTTGGCTGATCTCAGCCTCGTCAACCAGCTTGGCAGTCAGGAACACAGAGACTTGGCTCGGGAAGCTGTGAGGCGATCGTTAGTTCTTCTAAAGAATGGTGAATCTGCAGACAAGCCATTGCTACCCCTTCCAAAGAAGACATCAAAAATACTTGTAGCTGGAAGTCATGCAGACAATCTTGGTTATCAGTGTGGTGGTTGGACCATTGAGTGGCAGGGATTGAGTGGCAACGATCTCACACATGGTACCACAATCCTAACCGGTATAAAGAACACAGTTGATCCAGAAACTGAAGTGGTGTACAAGGAGAATCCTGATGCTGAGTATGTTAAGTCAAATGATTTCTCCTATGCCATCGTTGTCGTAGGAGAACCACCATATGCGGAGACATTTGGTGACAGTTTAACTTTGACTCTCCCTGATGCGGGCCTTAAAACTATTACAAACGTTTGTGGTGCTGTGAAGTGTGTTGTCATCATCATCTCCGGTCGTCCTGTTGTGATCCAACCATATGTTCCCCTGCTAGATGCTCTGGTTGCGGCGTGGCTTCCAGGAAGTGAGGGCCAAGGAGTTGCTGATGTTTTGTTTGGTGACTATGGTTTCACCGGCAAGCTCTCTCGCACTTGGTTTAAAACCGTTGGTCAGCTTCCTATGAATGTTGGAGATCCACATTATGACCCTCTCTTCCCCTTTGGATTTGGCCTGACAACAACACCCACCAAAGCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

636

Amino Acids

69.21

Weight (kDa)

7.57

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	54 - 383	1.1e-66	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	420 - 629	1.4e-38	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04885 AT5G04885 AT5G04885
fragaria_vesca	FvH4_1g28352 FvH4_1g28352 FvH4_1g28352 FvH4_4g26180 FvH4_4g26180 FvH4_7g05220 FvH4_7g05220
malus_domestica	MD02G1259600.v1.1 MD07G1060900.v1.1 MD11G1177800.v1.1 MD11G1177900.v1.1 MD14G1004200.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.6G150000_v2.0.a1 Prupe.6G150200_v2.0.a1 Prupe.6G150400_v2.0.a1 Prupe.6G150500_v2.0.a1 Prupe.7G007200_v2.0.a1
pyrus_communis	pycom14g00250
rosa_chinensis	RchiOBHm_Chr1g0331601 RchiOBHm_Chr3g0496681 RchiOBHm_Chr3g0496721 RchiOBHm_Chr4g0433771
rosa_laevigata	RLG00000006732 RLG00000022510 RLG00000022511 RLG00000029727 RLG00000034619
rosa_multiflora	Rmu_sc0005044.1_g000017 Rmu_sc0006176.1_g000006
rosa_roxburghii	Rroxscaffold_4G00319030 Rroxscaffold_5G00375200 Rroxscaffold_6G00388790 Rroxscaffold_6G00388830 Rroxscaffold_6G00388850
rosa_rugosa	Rorug01G0095000 Rorug01G0095100 Rorug01G0095200 Rorug03G0185800 Rorug03G0186000 Rorug03G0285500 Rorug03G0285700 Rorug04G0271300 Rorug05G0248600 Rorug06G0034700
rosa_samantha	Rh1AG118800 Rh1CG113800 Rh3AG330600 Rh3BG366600 Rh3CG363300 Rh3CG363500 Rh4AG326000 Rh4CG349100 Rh5AG325000
rosa_wichuraiana	Rw1G009560 Rw3G028940 Rw3G028950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1157
AarI	CACCTGC	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	71
Acc65I	GGTACC	1 cut(s)	1424
AccB1I	GGYRCC	1 cut(s)	1424
AccB7I	CCANNNNNTGG	1 cut(s)	1389
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	7 cut(s)	53, 255, 536, 1144, 1562, 1604, 1718
AclI	AACGTT	1 cut(s)	1626
AclWI	GGATC	5 cut(s)	542, 1022, 1454, 1675, 1838
AcoI	YGGCCR	2 cut(s)	178, 385
AcsI	RAATTY	2 cut(s)	1061, 1137
AcuI	CTGAAG	2 cut(s)	195, 1491
AfaI	GTAC	4 cut(s)	233, 1049, 1426, 1481
AfiI	CCNNNNNNNGG	6 cut(s)	18, 557, 928, 1389, 1603, 1604
AflII	CTTAAG	1 cut(s)	908
AgeI	ACCGGT	1 cut(s)	1439
AgsI	TTSAA	4 cut(s)	127, 323, 491, 602
AjnI	CCWGG	4 cut(s)	443, 622, 1083, 1729
AjuI	GAANNNNNNNTTGG	2 cut(s)	1677, 1709
Alw26I	GTCTC	3 cut(s)	630, 1221, 1559
AlwI	GGATC	5 cut(s)	542, 1022, 1454, 1675, 1838
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	1 cut(s)	1236
AoxI	GGCC	6 cut(s)	178, 385, 430, 1606, 1741, 1879
ApeKI	GCWGC	4 cut(s)	50, 77, 476, 698
ApoI	RAATTY	2 cut(s)	1061, 1137
AsiGI	ACCGGT	1 cut(s)	1439
Asp718I	GGTACC	1 cut(s)	1424
AspLEI	GCGC	2 cut(s)	201, 260
AspS9I	GGNCC	5 cut(s)	109, 448, 1380, 1606, 1741
AsuHPI	GGTGA	6 cut(s)	322, 966, 1289, 1586, 1774, 1781
AvaI	CYCGRG	1 cut(s)	1236
AvaII	GGWCC	3 cut(s)	109, 448, 1380
BaeGI	GKGCMC	1 cut(s)	25
BalI	TGGCCA	2 cut(s)	180, 387
BanI	GGYRCC	1 cut(s)	1424
BbsI	GAAGAC	1 cut(s)	1322
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	62, 89, 463, 710
BccI	CCATC	5 cut(s)	280, 549, 719, 1064, 1541
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	4 cut(s)	445, 624, 1085, 1731
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	1035
BcoDI	GTCTC	3 cut(s)	630, 1221, 1559
BfaI	CTAG	5 cut(s)	132, 648, 654, 1703, 1909
BfmI	CTRYAG	3 cut(s)	288, 577, 1284
BfoI	RGCGCY	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	908
BfuAI	ACCTGC	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	7 cut(s)	51, 54, 78, 256, 477, 699, 1719
BlsI	GCNGC	7 cut(s)	52, 55, 79, 257, 478, 700, 1720
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	4 cut(s)	445, 624, 1085, 1731
Bme18I	GGWCC	3 cut(s)	109, 448, 1380
BmeT110I	CYCGRG	1 cut(s)	1236
BmgT120I	GGNCC	5 cut(s)	109, 448, 1380, 1606, 1741
BmiI	GGNNCC	5 cut(s)	111, 449, 450, 1044, 1426
BmrFI	CCNGG	4 cut(s)	445, 624, 1085, 1731
BmsI	GCATC	7 cut(s)	364, 753, 864, 1114, 1486, 1591, 1696
BpiI	GAAGAC	1 cut(s)	1322
BpmI	CTGGAG	1 cut(s)	838
Bpu10I	CCTNAGC	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	747
BsaJI	CCNNGG	4 cut(s)	346, 433, 444, 1744
BsaWI	WCCGGW	2 cut(s)	1439, 1664
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 557, 928, 1389, 1603, 1604
Bse118I	RCCGGY	2 cut(s)	1439, 1784
Bse1I	ACTGG	2 cut(s)	685, 904
Bse3DI	GCAATG	2 cut(s)	612, 1295
BseBI	CCWGG	4 cut(s)	445, 624, 1085, 1731
BseCI	ATCGAT	1 cut(s)	747
BseDI	CCNNGG	4 cut(s)	346, 433, 444, 1744
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	6 cut(s)	18, 557, 928, 1389, 1603, 1604
BseMI	GCAATG	2 cut(s)	612, 1295
BseMII	CTCAG	7 cut(s)	140, 207, 626, 799, 957, 1204, 1491
BseNI	ACTGG	2 cut(s)	685, 904
BseRI	GAGGAG	1 cut(s)	1147
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	62, 89, 463, 710
BsgI	GTGCAG	1 cut(s)	468
Bsh1285I	CGRYCG	2 cut(s)	1256, 1669
BshFI	GGCC	6 cut(s)	180, 387, 432, 1608, 1743, 1881
BshNI	GGYRCC	1 cut(s)	1424
BshTI	ACCGGT	1 cut(s)	1439
BshVI	ATCGAT	1 cut(s)	747
BsiEI	CGRYCG	2 cut(s)	1256, 1669
BsiHKCI	CYCGRG	1 cut(s)	1236
BsiSI	CCGG	4 cut(s)	154, 1440, 1665, 1785
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	6 cut(s)	18, 557, 928, 1389, 1603, 1604
BsmAI	GTCTC	3 cut(s)	630, 1221, 1559
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	2 cut(s)	507, 789
BsnI	GGCC	6 cut(s)	180, 387, 432, 1608, 1743, 1881
BsoBI	CYCGRG	1 cut(s)	1236
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	1479
BspACI	CCGC	7 cut(s)	53, 255, 536, 1144, 1562, 1604, 1718
BspANI	GGCC	6 cut(s)	180, 387, 432, 1608, 1743, 1881
BspCNI	CTCAG	7 cut(s)	141, 208, 625, 798, 956, 1203, 1492
BspDI	ATCGAT	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	5 cut(s)	111, 449, 450, 1044, 1426
BspMAI	CTGCAG	2 cut(s)	292, 1288
BspMI	ACCTGC	1 cut(s)	71
BspPI	GGATC	5 cut(s)	542, 1022, 1454, 1675, 1838
BspT107I	GGYRCC	1 cut(s)	1424
BspTI	CTTAAG	1 cut(s)	908
BsrDI	GCAATG	2 cut(s)	612, 1295
BsrFI	RCCGGY	2 cut(s)	1439, 1784
BsrGI	TGTACA	1 cut(s)	1479
BsrI	ACTGG	2 cut(s)	685, 904
BssAI	RCCGGY	2 cut(s)	1439, 1784
BssECI	CCNNGG	4 cut(s)	346, 433, 444, 1744
BssT1I	CCWWGG	3 cut(s)	346, 433, 1744
Bst2UI	CCWGG	4 cut(s)	445, 624, 1085, 1731
Bst4CI	ACNGT	6 cut(s)	581, 763, 887, 1456, 1580, 1816
Bst6I	CTCTTC	1 cut(s)	1868
BstAFI	CTTAAG	1 cut(s)	908
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstAUI	TGTACA	1 cut(s)	1479
BstC8I	GCNNGC	4 cut(s)	879, 1024, 1606, 1790
BstDEI	CTNAG	7 cut(s)	149, 216, 612, 785, 943, 1190, 1500
BstENI	CCTNNNNNAGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	201, 260
BstMAI	GTCTC	3 cut(s)	630, 1221, 1559
BstMCI	CGRYCG	2 cut(s)	1256, 1669
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 196, 482, 704, 1241, 1715
BstNI	CCWGG	4 cut(s)	445, 624, 1085, 1731
BstNSI	RCATGY	2 cut(s)	799, 881
BstSCI	CCNGG	4 cut(s)	443, 622, 1083, 1729
BstSFI	CTRYAG	3 cut(s)	288, 577, 1284
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	4 cut(s)	62, 89, 463, 710
BstV2I	GAAGAC	1 cut(s)	1322
BstX2I	RGATCY	2 cut(s)	547, 1843
BstYI	RGATCY	2 cut(s)	547, 1843
Bsu15I	ATCGAT	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	6 cut(s)	180, 387, 432, 1608, 1743, 1881
BsuTUI	ATCGAT	1 cut(s)	747
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	1134
BtsIMutI	CAGTG	5 cut(s)	586, 759, 897, 1134, 1373
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	4 cut(s)	879, 1024, 1606, 1790
CaiI	CAGNNNCTG	1 cut(s)	1469
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	2 cut(s)	201, 260
Cfr10I	RCCGGY	2 cut(s)	1439, 1784
Cfr13I	GGNCC	5 cut(s)	109, 448, 1380, 1606, 1741
ClaI	ATCGAT	1 cut(s)	747
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	232, 1048, 1425, 1480
CspAI	ACCGGT	1 cut(s)	1439
CviQI	GTAC	4 cut(s)	232, 1048, 1425, 1480
DdeI	CTNAG	7 cut(s)	149, 216, 612, 785, 943, 1190, 1500
DraI	TTTAAA	1 cut(s)	1810
EaeI	YGGCCR	2 cut(s)	178, 385
Eam1104I	CTCTTC	1 cut(s)	1868
EarI	CTCTTC	1 cut(s)	1868
Eco130I	CCWWGG	3 cut(s)	346, 433, 1744
Eco47I	GGWCC	3 cut(s)	109, 448, 1380
Eco57I	CTGAAG	2 cut(s)	195, 1491
Eco88I	CYCGRG	1 cut(s)	1236
EcoNI	CCTNNNNNAGG	1 cut(s)	16
EcoO109I	RGGNCCY	2 cut(s)	109, 448
EcoRI	GAATTC	1 cut(s)	1061
EcoRII	CCWGG	4 cut(s)	443, 622, 1083, 1729
EcoT14I	CCWWGG	3 cut(s)	346, 433, 1744
EcoT22I	ATGCAT	1 cut(s)	879
ErhI	CCWWGG	3 cut(s)	346, 433, 1744
FaqI	GGGAC	1 cut(s)	461
FauI	CCCGC	2 cut(s)	1137, 1597
FauNDI	CATATG	2 cut(s)	1558, 1690
FbaI	TGATCA	1 cut(s)	1035
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	7 cut(s)	51, 54, 78, 256, 477, 699, 1719
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	7 cut(s)	51, 54, 78, 256, 477, 699, 1719
FspBI	CTAG	5 cut(s)	132, 648, 654, 1703, 1909
GlaI	GCGC	2 cut(s)	200, 259
GluI	GCNGC	7 cut(s)	51, 54, 78, 256, 477, 699, 1719
GsuI	CTGGAG	1 cut(s)	838
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	6 cut(s)	180, 387, 432, 1608, 1743, 1881
HapII	CCGG	4 cut(s)	154, 1440, 1665, 1785
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	201, 260
Hin6I	GCGC	2 cut(s)	199, 258
HinP1I	GCGC	2 cut(s)	199, 258
HincII	GTYRAC	1 cut(s)	1201
HindII	GTYRAC	1 cut(s)	1201
HinfI	GANTC	8 cut(s)	135, 284, 610, 867, 1174, 1280, 1489, 1591
HpaII	CCGG	4 cut(s)	154, 1440, 1665, 1785
HphI	GGTGA	6 cut(s)	322, 966, 1289, 1586, 1774, 1781
Hpy166II	GTNNAC	3 cut(s)	400, 1201, 1480
Hpy188I	TCNGA	3 cut(s)	277, 615, 946
Hpy188III	TCNNGA	7 cut(s)	223, 654, 871, 1217, 1238, 1463, 1493
Hpy8I	GTNNAC	3 cut(s)	400, 1201, 1480
HpyAV	CCTTC	2 cut(s)	818, 1316
HpyCH4III	ACNGT	6 cut(s)	581, 763, 887, 1456, 1580, 1816
HpyCH4IV	ACGT	2 cut(s)	516, 1626
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 196, 482, 704, 1241, 1715
HpyF3I	CTNAG	7 cut(s)	149, 216, 612, 785, 943, 1190, 1500
HpySE526I	ACGT	2 cut(s)	516, 1626
HspAI	GCGC	2 cut(s)	199, 258
KflI	GGGWCCC	1 cut(s)	448
KpnI	GGTACC	1 cut(s)	1428
Ksp22I	TGATCA	1 cut(s)	1035
LmnI	GCTCC	2 cut(s)	437, 473
Lsp1109I	GCAGC	4 cut(s)	62, 89, 463, 710
LweI	GCATC	7 cut(s)	364, 753, 864, 1114, 1486, 1591, 1696
MaeI	CTAG	5 cut(s)	132, 648, 654, 1703, 1909
MaeII	ACGT	2 cut(s)	516, 1626
MaeIII	GTNAC	6 cut(s)	301, 566, 780, 895, 1574, 1769
MboII	GAAGA	5 cut(s)	20, 596, 1256, 1327, 1855
MflI	RGATCY	2 cut(s)	547, 1843
MhlI	GDGCHC	1 cut(s)	25
MlsI	TGGCCA	2 cut(s)	180, 387
MluCI	AATT	6 cut(s)	816, 966, 1002, 1061, 1116, 1137
MluNI	TGGCCA	2 cut(s)	180, 387
MlyI	GAGTC	3 cut(s)	604, 876, 1585
MmeI	TCCRAC	3 cut(s)	1358, 1708, 1819
Mox20I	TGGCCA	2 cut(s)	180, 387
Mph1103I	ATGCAT	1 cut(s)	879
MscI	TGGCCA	2 cut(s)	180, 387
MseI	TTAA	7 cut(s)	462, 909, 1149, 1509, 1583, 1611, 1809
MslI	CAYNNNNRTG	5 cut(s)	393, 794, 1031, 1037, 1106
Msp20I	TGGCCA	2 cut(s)	180, 387
MspA1I	CMGCKG	3 cut(s)	53, 215, 858
MspCI	CTTAAG	1 cut(s)	908
MspI	CCGG	4 cut(s)	154, 1440, 1665, 1785
MspR9I	CCNGG	4 cut(s)	445, 624, 1085, 1731
Mva1269I	GAATGC	2 cut(s)	507, 789
MvaI	CCWGG	4 cut(s)	445, 624, 1085, 1731
MwoI	GCNNNNNNNGC	6 cut(s)	77, 196, 482, 704, 1241, 1715
NdeI	CATATG	2 cut(s)	1558, 1690
NlaIV	GGNNCC	5 cut(s)	111, 449, 450, 1044, 1426
NmuCI	GTSAC	3 cut(s)	895, 1574, 1769
NsiI	ATGCAT	1 cut(s)	879
NspI	RCATGY	2 cut(s)	799, 881
PaeI	GCATGC	1 cut(s)	881
PagI	TCATGA	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	71
PctI	GAATGC	2 cut(s)	507, 789
PfeI	GAWTC	5 cut(s)	135, 284, 1174, 1280, 1489
PflMI	CCANNNNNTGG	1 cut(s)	1389
PfoI	TCCNGGA	1 cut(s)	1729
PinAI	ACCGGT	1 cut(s)	1439
PkrI	GCNGC	7 cut(s)	52, 55, 79, 257, 478, 700, 1720
Ple19I	CGATCG	1 cut(s)	1256
PleI	GAGTC	3 cut(s)	604, 875, 1585
PpsI	GAGTC	3 cut(s)	604, 875, 1585
PpuMI	RGGWCCY	2 cut(s)	109, 448
PsiI	TTATAA	1 cut(s)	1157
Psp1406I	AACGTT	1 cut(s)	1626
Psp5II	RGGWCCY	2 cut(s)	109, 448
Psp6I	CCWGG	4 cut(s)	443, 622, 1083, 1729
PspGI	CCWGG	4 cut(s)	443, 622, 1083, 1729
PspN4I	GGNNCC	5 cut(s)	111, 449, 450, 1044, 1426
PspPI	GGNCC	5 cut(s)	109, 448, 1380, 1606, 1741
PspPPI	RGGWCCY	2 cut(s)	109, 448
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PstI	CTGCAG	2 cut(s)	292, 1288
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	2 cut(s)	547, 1843
PvuI	CGATCG	1 cut(s)	1256
PvuII	CAGCTG	2 cut(s)	215, 858
RsaI	GTAC	4 cut(s)	233, 1049, 1426, 1481
RsaNI	GTAC	4 cut(s)	232, 1048, 1425, 1480
RseI	CAYNNNNRTG	5 cut(s)	393, 794, 1031, 1037, 1106
SaqAI	TTAA	7 cut(s)	462, 909, 1149, 1509, 1583, 1611, 1809
SatI	GCNGC	7 cut(s)	51, 54, 78, 256, 477, 699, 1719
Sau96I	GGNCC	5 cut(s)	109, 448, 1380, 1606, 1741
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	3 cut(s)	604, 876, 1585
ScrFI	CCNGG	4 cut(s)	445, 624, 1085, 1731
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	7 cut(s)	364, 753, 864, 1114, 1486, 1591, 1696
SfcI	CTRYAG	3 cut(s)	288, 577, 1284
SinI	GGWCC	3 cut(s)	109, 448, 1380
SmiMI	CAYNNNNRTG	5 cut(s)	393, 794, 1031, 1037, 1106
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
SphI	GCATGC	1 cut(s)	881
Sse9I	AATT	6 cut(s)	816, 966, 1002, 1061, 1116, 1137
SsiI	CCGC	7 cut(s)	53, 255, 536, 1144, 1562, 1604, 1718
SspMI	CTAG	5 cut(s)	132, 648, 654, 1703, 1909
StyD4I	CCNGG	4 cut(s)	443, 622, 1083, 1729
StyI	CCWWGG	3 cut(s)	346, 433, 1744
TaaI	ACNGT	6 cut(s)	581, 763, 887, 1456, 1580, 1816
TaiI	ACGT	2 cut(s)	519, 1629
TaqI	TCGA	2 cut(s)	747, 822
TasI	AATT	6 cut(s)	816, 966, 1002, 1061, 1116, 1137
TatI	WGTACW	2 cut(s)	231, 1479
TauI	GCSGC	3 cut(s)	56, 258, 1721
TfiI	GAWTC	5 cut(s)	135, 284, 1174, 1280, 1489
Tru1I	TTAA	7 cut(s)	462, 909, 1149, 1509, 1583, 1611, 1809
Tru9I	TTAA	7 cut(s)	462, 909, 1149, 1509, 1583, 1611, 1809
TscAI	CASTG	5 cut(s)	586, 766, 904, 1134, 1373
TseFI	GTSAC	3 cut(s)	895, 1574, 1769
TseI	GCWGC	4 cut(s)	50, 77, 476, 698
Tsp45I	GTSAC	3 cut(s)	895, 1574, 1769
TspDTI	ATGAA	6 cut(s)	113, 239, 371, 940, 1054, 1847
TspGWI	ACGGA	4 cut(s)	911, 1035, 1073, 1167
TspRI	CASTG	5 cut(s)	586, 766, 904, 1134, 1373
Van91I	CCANNNNNTGG	1 cut(s)	1389
Vha464I	CTTAAG	1 cut(s)	908
VpaK11BI	GGWCC	3 cut(s)	109, 448, 1380
XagI	CCTNNNNNAGG	1 cut(s)	16
XapI	RAATTY	2 cut(s)	1061, 1137
XbaI	TCTAGA	1 cut(s)	653
XceI	RCATGY	2 cut(s)	799, 881
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	5 cut(s)	132, 648, 654, 1703, 1909
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.