Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000924

Physical Location & Seq

Genomic Coordinates Forward (+)

15709934 .. 15711323

Gene Structure 1390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0095100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGAATGAAGAAAATGATCTTGCATCAGGAACTTTTACATGGAAAATCCACACATTCTCCAAGTTGAATGCTAACAAGTGTTATTCTGAAGTTTTTGTTATTGGCGGTTTCAAATGGCGGGTTGGTCTATATCCAAAGGGAAATAAAGTAGGACACTCCATATCCATGTATTTGGAGGTTGCAGATTCCTCAAAATTGCCGTCTGGGTGGAGTAGATATGCCAAATTCAGTTTGACCTTGGTTAATCAACTTGATAGAATCCTGTCAAAAACCGCAGACCTTGAGCATGAGTTCAAAGCGAATGACAGTGACTGGGGACTCAAAGAATTCATGAATTTAAGTGAGATCCATGACCTTTCTAAAGGCTATCTTGTGAATGATATTTGTATTGTTGAAACCAATGTTTCAGTTCGTAAGGGTGATATTAAAATCTTAGACAACGAAACTGGCGAGCTTATGGATTTTAAAGGTTTAGGACGAATAGAGTTAGCTTTTTTTCCACTGCTGGAAGAAATCTGTTTGTTGCATCCTTCGTTAATTGAGTGCCAACAGAGGAGAAGCCGCACATTCGTCGAATGTGCATTCACAACATTGGGCCGACTCTTACATTTCCTGAAGACTACAAAGGTGAAGAATTTGAACCAAGATGGCTATGAGAGGCTTCAAATTTTATGGGATGAGCTCGAGTGCTTCAAGTTTGACTTGTCTTGGCTGCAGCCTCATGTTCAATCTGTTTTTGGTATGAAGAACATGACCGGAAGAGTTGATAGATTGAAAGAAGATGTCAAAATTTTGGAGAATGAAATCAAGAGGCGGAGGCTTATGCTAGTAGCTGCAGAGGTTGACCTGGAGAGAGCGAAAGAAGATTTGGTAAAGGCAGAAACAAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

298

Amino Acids

34.46

Weight (kDa)

6.68

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	12 - 136	6.9e-33	MATH domain
MATH	PF00917	17 - 138	2e-17	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04885 AT5G04885 AT5G04885
fragaria_vesca	FvH4_1g28352 FvH4_1g28352 FvH4_1g28352 FvH4_4g26180 FvH4_4g26180 FvH4_7g05220 FvH4_7g05220
malus_domestica	MD02G1259600.v1.1 MD07G1060900.v1.1 MD11G1177800.v1.1 MD11G1177900.v1.1 MD14G1004200.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.2G065700_v2.0.a1 Prupe.6G150000_v2.0.a1 Prupe.6G150200_v2.0.a1 Prupe.6G150400_v2.0.a1 Prupe.6G150500_v2.0.a1 Prupe.7G007200_v2.0.a1
pyrus_communis	pycom14g00250
rosa_chinensis	RchiOBHm_Chr1g0331601 RchiOBHm_Chr3g0496681 RchiOBHm_Chr3g0496721 RchiOBHm_Chr4g0433771
rosa_laevigata	RLG00000006732 RLG00000022510 RLG00000022511 RLG00000029727 RLG00000034619
rosa_multiflora	Rmu_sc0005044.1_g000017 Rmu_sc0006176.1_g000006
rosa_roxburghii	Rroxscaffold_4G00319030 Rroxscaffold_5G00375200 Rroxscaffold_6G00388790 Rroxscaffold_6G00388830 Rroxscaffold_6G00388850
rosa_rugosa	Rorug01G0095000 Rorug01G0095100 Rorug01G0095200 Rorug03G0185800 Rorug03G0186000 Rorug03G0285500 Rorug03G0285700 Rorug04G0271300 Rorug05G0248600 Rorug06G0034700
rosa_samantha	Rh1AG118800 Rh1CG113800 Rh3AG330600 Rh3BG366600 Rh3CG363300 Rh3CG363500 Rh4AG326000 Rh4CG349100 Rh5AG325000
rosa_wichuraiana	Rw1G009560 Rw3G028940 Rw3G028950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	108, 121, 276, 565, 817
AclWI	GGATC	1 cut(s)	343
AcsI	RAATTY	6 cut(s)	227, 329, 337, 637, 669, 792
AcuI	CTGAAG	2 cut(s)	111, 638
AgsI	TTSAA	9 cut(s)	70, 115, 298, 398, 643, 668, 697, 731, 778
AjnI	CCWGG	1 cut(s)	849
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AluBI	AGCT	4 cut(s)	457, 494, 685, 836
AluI	AGCT	4 cut(s)	457, 494, 685, 836
Alw21I	GWGCWC	1 cut(s)	687
AlwI	GGATC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	3 cut(s)	715, 718, 836
ApoI	RAATTY	6 cut(s)	227, 329, 337, 637, 669, 792
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	2 cut(s)	434, 643
AvaI	CYCGRG	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	702, 730, 823
BccI	CCATC	1 cut(s)	644
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BciT130I	CCWGG	1 cut(s)	851
BfaI	CTAG	1 cut(s)	830
BfmI	CTRYAG	2 cut(s)	716, 837
BisI	GCNGC	4 cut(s)	565, 716, 719, 837
BlsI	GCNGC	4 cut(s)	566, 717, 720, 838
Bme1390I	CCNGG	1 cut(s)	851
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	851
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	35, 538
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	626
BpmI	CTGGAG	1 cut(s)	872
BpuEI	CTTGAG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	758
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse1I	ACTGG	2 cut(s)	320, 454
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	529, 685
BseNI	ACTGG	2 cut(s)	320, 454
BseRI	GAGGAG	1 cut(s)	571
BseXI	GCAGC	3 cut(s)	702, 730, 823
BshFI	GGCC	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	687
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	759
BslFI	GGGAC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	2 cut(s)	76, 584
BsnI	GGCC	1 cut(s)	600
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	2 cut(s)	19, 348
BspACI	CCGC	5 cut(s)	108, 121, 276, 565, 817
BspANI	GGCC	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	333
BspMAI	CTGCAG	2 cut(s)	720, 841
BspPI	GGATC	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	320, 454
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	2 cut(s)	19, 348
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	757
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	529, 685
BstKTI	GATC	2 cut(s)	22, 351
BstMBI	GATC	2 cut(s)	19, 348
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	849
BstSFI	CTRYAG	2 cut(s)	716, 837
BstV1I	GCAGC	3 cut(s)	702, 730, 823
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	529, 685
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	316, 503
Cac8I	GCNNGC	1 cut(s)	455
CaiI	CAGNNNCTG	1 cut(s)	315
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	598
CviAII	CATG	7 cut(s)	42, 169, 290, 334, 353, 725, 754
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	2 cut(s)	21, 350
DpnII	GATC	2 cut(s)	19, 348
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	757
EarI	CTCTTC	1 cut(s)	757
EciI	GGCGGA	1 cut(s)	832
Ecl136II	GAGCTC	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	2 cut(s)	111, 638
Eco88I	CYCGRG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	7 cut(s)	45, 172, 293, 337, 356, 728, 757
FalI	AAGNNNNNCTT	4 cut(s)	357, 389, 689, 721
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	7 cut(s)	41, 168, 289, 333, 352, 724, 753
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	565, 716, 719, 837
FokI	GGATG	2 cut(s)	516, 692
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	4 cut(s)	565, 716, 719, 837
FspBI	CTAG	1 cut(s)	830
GluI	GCNGC	4 cut(s)	565, 716, 719, 837
GsuI	CTGGAG	1 cut(s)	872
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	1 cut(s)	759
Hin1II	CATG	7 cut(s)	45, 172, 293, 337, 356, 728, 757
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HinfI	GANTC	4 cut(s)	188, 261, 321, 603
HpaII	CCGG	1 cut(s)	759
HphI	GGTGA	2 cut(s)	434, 643
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	4 cut(s)	30, 334, 616, 811
Hpy8I	GTNNAC	1 cut(s)	847
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	1 cut(s)	543
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	6 cut(s)	26, 185, 529, 584, 718, 839
HpyF3I	CTNAG	1 cut(s)	436
Hsp92II	CATG	7 cut(s)	45, 172, 293, 337, 356, 728, 757
Kzo9I	GATC	2 cut(s)	19, 348
Lsp1109I	GCAGC	3 cut(s)	702, 730, 823
LweI	GCATC	2 cut(s)	35, 538
MaeI	CTAG	1 cut(s)	830
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	21, 350
MboI	GATC	2 cut(s)	19, 348
MboII	GAAGA	9 cut(s)	16, 23, 524, 631, 646, 760, 774, 794, 878
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	8 cut(s)	197, 227, 329, 337, 540, 637, 669, 792
MlyI	GAGTC	2 cut(s)	315, 597
MnlI	CCTC	8 cut(s)	172, 202, 549, 654, 732, 807, 813, 835
MseI	TTAA	6 cut(s)	246, 341, 429, 468, 539, 895
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	759
MspR9I	CCNGG	1 cut(s)	851
Mva1269I	GAATGC	2 cut(s)	76, 584
MvaI	CCWGG	1 cut(s)	851
NdeII	GATC	2 cut(s)	19, 348
NlaIII	CATG	7 cut(s)	45, 172, 293, 337, 356, 728, 757
NmuCI	GTSAC	1 cut(s)	311
PaeR7I	CTCGAG	1 cut(s)	686
PagI	TCATGA	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	2 cut(s)	76, 584
PfeI	GAWTC	2 cut(s)	188, 261
PkrI	GCNGC	4 cut(s)	566, 717, 720, 838
PleI	GAGTC	2 cut(s)	315, 597
PpsI	GAGTC	2 cut(s)	315, 597
Psp124BI	GAGCTC	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	598
PspXI	VCTCGAGB	1 cut(s)	686
PstI	CTGCAG	2 cut(s)	720, 841
PstNI	CAGNNNCTG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	687
SaqAI	TTAA	6 cut(s)	246, 341, 429, 468, 539, 895
SatI	GCNGC	4 cut(s)	565, 716, 719, 837
Sau3AI	GATC	2 cut(s)	19, 348
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	2 cut(s)	315, 597
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	2 cut(s)	35, 538
SfcI	CTRYAG	2 cut(s)	716, 837
Sfr274I	CTCGAG	1 cut(s)	686
SlaI	CTCGAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	284, 686
SmoI	CTYRAG	2 cut(s)	284, 686
Sse9I	AATT	8 cut(s)	197, 227, 329, 337, 540, 637, 669, 792
SsiI	CCGC	5 cut(s)	108, 121, 276, 565, 817
SspMI	CTAG	1 cut(s)	830
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	849
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	576, 687
TasI	AATT	8 cut(s)	197, 227, 329, 337, 540, 637, 669, 792
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	2 cut(s)	188, 261
Tru1I	TTAA	6 cut(s)	246, 341, 429, 468, 539, 895
Tru9I	TTAA	6 cut(s)	246, 341, 429, 468, 539, 895
TscAI	CASTG	2 cut(s)	316, 510
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	715, 718, 836
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	6 cut(s)	17, 24, 322, 350, 761, 819
TspRI	CASTG	2 cut(s)	316, 510
XapI	RAATTY	6 cut(s)	227, 329, 337, 637, 669, 792
XhoI	CTCGAG	1 cut(s)	686
XspI	CTAG	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.