Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8157628.1

Orthogroup ID

OG0001265

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 658

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8157628.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 466 bp

gcttagagccaccgtgtatggagcacttattattcatccaaaacaaggagactcgtatccattccctaaaccaaatcgtcaggcaacacttcttctcggtgagtggtgggacgctaaccctattgacgtggtgaggacagcaactcgcacaggagcagctccgaatgtttctgatgcatacactatcaacggtcaacctggtgatctttacaattgctccagcaaagggactgtcgtagttcccatagactccggtgagaccaacctactgagagtgataaacgccgccctcaaccaacctcttttcttctccgttgccaaccacaagctgactgtggtcggtgctgatgcctcctacaccaagcgtttcaccaccaaagttctcatgctaggacccggccagaccaccgatgttttaatcaccggggaccagccaccatctcgatactacttggcggcacgtgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0042221 GO:0046688 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

155

Amino Acids

16.72

Weight (kDa)

9.1

Isoelectric Point (pI)

23.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40370 AT5G05390
fragaria_vesca	FvH4_7g07750 FvH4_7g07800 FvH4_7g25330
malus_domestica	MD01G1158900.v1.1 MD01G1159400.v1.1 MD07G1227800.v1.1 MD07G1227900.v1.1
prunus_persica	Prupe.2G257400_v2.0.a1
pyrus_communis	pycom01g17560 pycom01g17570 pycom07g20630
rosa_chinensis	RchiOBHm_Chr1g0341691 RchiOBHm_Chr1g0341781 RchiOBHm_Chr1g0341901 RchiOBHm_Chr1g0342021 RchiOBHm_Chr1g0342201 RchiOBHm_Chr1g0342281 RchiOBHm_Chr1g0371241
rosa_laevigata	RLG00000026977 RLG00000029124 RLG00000029139 RLG00000029144 RLG00000029148
rosa_multiflora	Rmu_co8157628.1_g000001 Rmu_sc0001400.1_g000014 Rmu_sc0001978.1_g000003 Rmu_sc0002161.1_g000024 Rmu_sc0002161.1_g000035 Rmu_sc0004658.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285850 Rroxscaffold_4G00312320 Rroxscaffold_4G00312390 Rroxscaffold_4G00312700 Rroxscaffold_4G00312750 Rroxscaffold_4G00312770 Rroxscaffold_4G00312800
rosa_rugosa	Rorug01G0152200.1 Rorug01G0152500.1 Rorug01G0153200.1 Rorug01G0153700.1 Rorug01G0362300
rosa_samantha	Rh1BG133800 Rh1BG134300 Rh1BG134600 Rh1BG137000 Rh1BG335900 Rh1CG155200 Rh1CG157900 Rh1CG349300
rosa_wichuraiana	Rw1G013920 Rw1G013930 Rw1G013990 Rw1G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	286, 456
AcoI	YGGCCR	1 cut(s)	398
AcvI	CACGTG	1 cut(s)	462
AfiI	CCNNNNNNNGG	2 cut(s)	45, 226
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	2 cut(s)	159, 329
AluI	AGCT	2 cut(s)	159, 329
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	43, 252
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	156
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
AspS9I	GGNCC	2 cut(s)	393, 428
AsuC2I	CCSGG	2 cut(s)	397, 425
AsuHPI	GGTGA	6 cut(s)	111, 143, 213, 267, 362, 413
AvaII	GGWCC	2 cut(s)	393, 428
BbrPI	CACGTG	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	67
BcnI	CCSGG	2 cut(s)	397, 425
BcoDI	GTCTC	2 cut(s)	43, 252
BfaI	CTAG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	157, 286, 457
BlsI	GCNGC	3 cut(s)	158, 287, 458
Bme1390I	CCNGG	3 cut(s)	199, 397, 425
Bme18I	GGWCC	2 cut(s)	393, 428
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	393, 428
BmiI	GGNNCC	2 cut(s)	395, 429
BmrFI	CCNGG	3 cut(s)	199, 397, 425
BmsI	GCATC	2 cut(s)	164, 338
BoxI	GACNNNNGTC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	397, 425
BsaAI	YACGTR	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 226
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	45, 226
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	168
BshFI	GGCC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	253, 397, 424
BslFI	GGGAC	3 cut(s)	123, 242, 441
BslI	CCNNNNNNNGG	2 cut(s)	45, 226
BsmAI	GTCTC	2 cut(s)	43, 252
BsmFI	GGGAC	3 cut(s)	123, 242, 441
BsnI	GGCC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	2 cut(s)	286, 456
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	395, 429
BspTNI	GGTCTC	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	4 cut(s)	14, 192, 233, 335
BstBAI	YACGTR	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	3, 270
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	2 cut(s)	43, 252
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	1 cut(s)	462
BstNI	CCWGG	1 cut(s)	199
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSCI	CCNGG	3 cut(s)	197, 395, 423
BstV1I	GCAGC	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	400
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	393, 428
CseI	GACGC	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	197
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	5 cut(s)	9, 159, 329, 400, 434
CviKI_1	RGCY	5 cut(s)	9, 159, 329, 400, 434
DdeI	CTNAG	2 cut(s)	3, 270
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	393, 428
Eco72I	CACGTG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	179
FaeI	CATG	1 cut(s)	389
FaiI	YATR	4 cut(s)	19, 179, 246, 387
FaqI	GGGAC	3 cut(s)	123, 242, 441
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	157, 286, 457
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	157, 286, 457
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	3 cut(s)	157, 286, 457
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	3 cut(s)	253, 397, 424
HgaI	GACGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	51, 249
HpaII	CCGG	3 cut(s)	253, 397, 424
HphI	GGTGA	6 cut(s)	111, 143, 213, 267, 362, 413
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	2 cut(s)	163, 173
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	1 cut(s)	195
HpyCH4III	ACNGT	4 cut(s)	14, 192, 233, 335
HpyCH4IV	ACGT	2 cut(s)	127, 461
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	462
HpyF3I	CTNAG	2 cut(s)	3, 270
HpySE526I	ACGT	2 cut(s)	127, 461
Hsp92II	CATG	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	203
LmnI	GCTCC	4 cut(s)	21, 153, 164, 222
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	164, 338
MabI	ACCWGGT	1 cut(s)	197
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	2 cut(s)	127, 461
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	2 cut(s)	84, 299
MfeI	CAATTG	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	45, 243
MnlI	CCTC	4 cut(s)	127, 300, 310, 362
Mph1103I	ATGCAT	1 cut(s)	179
MseI	TTAA	1 cut(s)	417
MspI	CCGG	3 cut(s)	253, 397, 424
MspR9I	CCNGG	3 cut(s)	199, 397, 425
MunI	CAATTG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	462
NciI	CCSGG	2 cut(s)	397, 425
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	2 cut(s)	395, 429
NsiI	ATGCAT	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	158, 287, 458
PleI	GAGTC	2 cut(s)	45, 243
PmaCI	CACGTG	1 cut(s)	462
PmlI	CACGTG	1 cut(s)	462
PpsI	GAGTC	2 cut(s)	45, 243
Ppu21I	YACGTR	1 cut(s)	462
PpuMI	RGGWCCY	1 cut(s)	393
PshAI	GACNNNNGTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	197
PspCI	CACGTG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	395, 429
PspPI	GGNCC	2 cut(s)	393, 428
PspPPI	RGGWCCY	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	3 cut(s)	157, 286, 457
Sau3AI	GATC	1 cut(s)	203
Sau96I	GGNCC	2 cut(s)	393, 428
SchI	GAGTC	2 cut(s)	45, 243
ScrFI	CCNGG	3 cut(s)	199, 397, 425
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	7 cut(s)	130, 161, 200, 268, 302, 331, 464
SexAI	ACCWGGT	1 cut(s)	197
SfaNI	GCATC	2 cut(s)	164, 338
SinI	GGWCC	2 cut(s)	393, 428
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	286, 456
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	197, 395, 423
TaaI	ACNGT	4 cut(s)	14, 192, 233, 335
TaiI	ACGT	2 cut(s)	130, 464
TaqI	TCGA	1 cut(s)	443
TasI	AATT	1 cut(s)	212
TauI	GCSGC	2 cut(s)	288, 459
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseI	GCWGC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	393, 428
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.