Rh1CG155200

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001265
Physical Location & Seq
Forward (+)
34270513 .. 34271897
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG155200.1

Sequence Viewer

Length: 1014 bp
ATGGAGGCACTCAGTAGCATTTTCCTACTAGGCCTTTGCCTTCTCTTTGCTTCATCGGCAATGTCGACCTTGGCCGATCCCAAAGCTCACCACCATGAATTTGTTATCCAAGAAACACCAGTGAAGAGGCTGTGCAAAACCCACAACACCATCACAGTGAATGGACAGTTCCCTGGACCAACCTTGGAAGTAAACAATGGCGACACTCTGGTCGTCAAAGTCACTAACAAAGCTCGATATAACGTCACCATTCACTGGCATGGCATTCGGCAAATGAGAACTGGATGGGCGGATGGGCCCGAGTTTGTTACTCAATGTCCTATTAGACCAGGAGGGAGTTACACCTATCGGTTTACAGTTCAGGGTCAAGAAGGTACTCTGTGGTGGCACGCTCATAGCTCATGGCTTAGAGCCACCGTGTATGGAGCACTTATTATTCATCCGAAACAAGGAGACTCGTATCCATTCACTAAACCGAATCGTCAAGCAACACTTCTTCTTGGTGAGTGGTGGGATGGTAACCCTATTGACGTGGTGAGGAGGGCGACTCGCACAGGAGCAGCTCCAAATGTTTCTAACGCATATACCATTAACGGTCAACCCGGAGATCTTTACAGTTGCTCCAGCAAAGGCACCGTCATAGTTCCAATAGACTCTGGTGAGACCAACCTACTGAGAGTGATAAACGCCGCCCTCAACCAACCTCTTTTCTTCTCCGTCGCCAACCATAAACTGACTGTGGTTGGTGCTGATGCCTCGTACACCAAGCCTTTCACCACCAAAGTTCTCATGTTAGGCCCAGGCCAGACTACTGATGTTTTAATTACCGGGGACCAGCCACCATCTCGATACTACTTGGCGGCGAGTGCCTATTTCAGTGCACAAAATGCTGCATTTGACAACACCACCACCACAGCCATTCTTGAATACAAGTCCGTTCGTTGCAACACTACAAGTTGCAAAAAGGGTAAAACAGTAATTAAACCCACAATTGTTGGAATTAAGTGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0042221 GO:0046688 GO:0050896 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

337

Amino Acids

36.96

Weight (kDa)

9.31

Isoelectric Point (pI)

22.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 36 - 150 4.4e-46 Multicopper oxidase
Cu-oxidase PF00394 163 - 311 3.8e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 632
AccB7I CCANNNNNTGG 1 cut(s) 255
AccI GTMKAC 1 cut(s) 65
AciI CCGC 3 cut(s) 290, 690, 860
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 2 cut(s) 376, 761
AfiI CCNNNNNNNGG 2 cut(s) 255, 449
AgsI TTSAA 1 cut(s) 926
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 3 cut(s) 172, 328, 799
AluBI AGCT 4 cut(s) 86, 233, 399, 563
AluI AGCT 4 cut(s) 86, 233, 399, 563
Alw21I GWGCWC 2 cut(s) 430, 883
Alw26I GTCTC 2 cut(s) 447, 656
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 5 cut(s) 31, 72, 296, 796, 802
ApaI GGGCCC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 2 cut(s) 560, 890
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 621, 653
AspS9I GGNCC 5 cut(s) 176, 296, 297, 797, 832
AsuC2I CCSGG 2 cut(s) 603, 829
AsuHPI GGTGA 6 cut(s) 80, 238, 515, 547, 671, 766
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 2 cut(s) 176, 832
BaeGI GKGCMC 2 cut(s) 300, 883
BanI GGYRCC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 430, 883
BbvI GCAGC 2 cut(s) 572, 877
BccI CCATC 5 cut(s) 158, 279, 287, 509, 850
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 3 cut(s) 174, 330, 801
BciVI GTATCC 1 cut(s) 471
BcnI CCSGG 2 cut(s) 603, 829
BcoDI GTCTC 2 cut(s) 447, 656
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 471
BglII AGATCT 1 cut(s) 607
BisI GCNGC 4 cut(s) 561, 690, 861, 891
BlsI GCNGC 4 cut(s) 562, 691, 862, 892
Bme1390I CCNGG 5 cut(s) 174, 330, 603, 801, 829
Bme18I GGWCC 2 cut(s) 176, 832
BmeT110I CYCGRG 1 cut(s) 299
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 5 cut(s) 176, 296, 297, 797, 832
BmiI GGNNCC 3 cut(s) 298, 634, 833
BmrFI CCNGG 5 cut(s) 174, 330, 603, 801, 829
BmsI GCATC 1 cut(s) 742
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 1 cut(s) 607
BpuMI CCSGG 2 cut(s) 603, 829
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 5 cut(s) 69, 172, 183, 799, 828
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 449
Bse1I ACTGG 3 cut(s) 119, 260, 286
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 3 cut(s) 174, 330, 801
BseDI CCNNGG 5 cut(s) 69, 172, 183, 799, 828
BseGI GGATG 4 cut(s) 290, 298, 439, 520
BseLI CCNNNNNNNGG 2 cut(s) 255, 449
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 25, 665
BseNI ACTGG 3 cut(s) 119, 260, 286
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 2 cut(s) 300, 883
BseXI GCAGC 2 cut(s) 572, 877
BshFI GGCC 5 cut(s) 33, 74, 298, 798, 804
BshNI GGYRCC 1 cut(s) 632
BsiHKAI GWGCWC 2 cut(s) 430, 883
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 603, 828
BslFI GGGAC 1 cut(s) 845
BslI CCNNNNNNNGG 2 cut(s) 255, 449
BsmAI GTCTC 2 cut(s) 447, 656
BsmFI GGGAC 1 cut(s) 845
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 5 cut(s) 33, 74, 298, 798, 804
Bso31I GGTCTC 1 cut(s) 656
BsoBI CYCGRG 1 cut(s) 299
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 3 cut(s) 300, 430, 883
Bsp143I GATC 2 cut(s) 76, 607
BspACI CCGC 3 cut(s) 290, 690, 860
BspANI GGCC 5 cut(s) 33, 74, 298, 798, 804
BspCNI CTCAG 2 cut(s) 24, 666
BspLI GGNNCC 3 cut(s) 298, 634, 833
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 3 cut(s) 119, 260, 286
BssECI CCNNGG 5 cut(s) 69, 172, 183, 799, 828
BssMI GATC 2 cut(s) 76, 607
BssT1I CCWWGG 2 cut(s) 69, 183
Bst2UI CCWGG 3 cut(s) 174, 330, 801
Bst4CI ACNGT 9 cut(s) 157, 168, 358, 418, 596, 617, 637, 739, 976
Bst6I CTCTTC 1 cut(s) 119
BstAPI GCANNNNNTGC 1 cut(s) 887
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 3 cut(s) 11, 407, 674
BstEII GGTNACC 1 cut(s) 518
BstF5I GGATG 4 cut(s) 290, 298, 439, 520
BstKTI GATC 2 cut(s) 79, 610
BstMAI GTCTC 2 cut(s) 447, 656
BstMBI GATC 2 cut(s) 76, 607
BstMWI GCNNNNNNNGC 3 cut(s) 56, 866, 887
BstNI CCWGG 3 cut(s) 174, 330, 801
BstPI GGTNACC 1 cut(s) 518
BstSCI CCNGG 5 cut(s) 172, 328, 601, 799, 827
BstSLI GKGCMC 2 cut(s) 300, 883
BstV1I GCAGC 2 cut(s) 572, 877
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 5 cut(s) 33, 74, 298, 798, 804
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 4 cut(s) 290, 298, 439, 520
BtsIMutI CAGTG 4 cut(s) 126, 162, 253, 883
Cac8I GCNNGC 1 cut(s) 390
Cfr13I GGNCC 5 cut(s) 176, 296, 297, 797, 832
Csp6I GTAC 2 cut(s) 375, 760
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviAII CATG 4 cut(s) 95, 260, 402, 790
CviQI GTAC 2 cut(s) 375, 760
DdeI CTNAG 3 cut(s) 11, 407, 674
DpnI GATC 2 cut(s) 78, 609
DpnII GATC 2 cut(s) 76, 607
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 69, 183
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 2 cut(s) 176, 832
Eco88I CYCGRG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 518
EcoO65I GGTNACC 1 cut(s) 518
EcoRII CCWGG 3 cut(s) 172, 328, 799
EcoT14I CCWWGG 2 cut(s) 69, 183
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 2 cut(s) 69, 183
FaeI CATG 4 cut(s) 98, 263, 405, 793
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 1 cut(s) 845
FatI CATG 4 cut(s) 94, 259, 401, 789
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 4 cut(s) 561, 690, 861, 891
FokI GGATG 4 cut(s) 297, 305, 426, 527
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 4 cut(s) 561, 690, 861, 891
FspBI CTAG 1 cut(s) 29
GluI GCNGC 4 cut(s) 561, 690, 861, 891
GsuI CTGGAG 1 cut(s) 607
HaeIII GGCC 5 cut(s) 33, 74, 298, 798, 804
HapII CCGG 2 cut(s) 603, 828
Hin1II CATG 4 cut(s) 98, 263, 405, 793
HincII GTYRAC 2 cut(s) 66, 599
HindII GTYRAC 2 cut(s) 66, 599
HinfI GANTC 4 cut(s) 455, 478, 547, 653
HpaII CCGG 2 cut(s) 603, 828
HphI GGTGA 6 cut(s) 80, 238, 515, 547, 671, 766
Hpy166II GTNNAC 7 cut(s) 66, 193, 354, 599, 762, 881, 1008
Hpy188I TCNGA 1 cut(s) 444
Hpy188III TCNNGA 3 cut(s) 368, 846, 923
Hpy8I GTNNAC 7 cut(s) 66, 193, 354, 599, 762, 881, 1008
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 2 cut(s) 50, 365
HpyCH4III ACNGT 9 cut(s) 157, 168, 358, 418, 596, 617, 637, 739, 976
HpyCH4IV ACGT 2 cut(s) 243, 531
HpyCH4V TGCA 5 cut(s) 135, 881, 893, 945, 960
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 866, 887
HpyF3I CTNAG 3 cut(s) 11, 407, 674
HpySE526I ACGT 2 cut(s) 243, 531
Hsp92II CATG 4 cut(s) 98, 263, 405, 793
Kzo9I GATC 2 cut(s) 76, 607
LmnI GCTCC 4 cut(s) 425, 557, 568, 626
Lsp1109I GCAGC 2 cut(s) 572, 877
LweI GCATC 1 cut(s) 742
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 243, 531
MaeIII GTNAC 5 cut(s) 220, 244, 307, 338, 518
MalI GATC 2 cut(s) 78, 609
MboI GATC 2 cut(s) 76, 607
MboII GAAGA 3 cut(s) 136, 488, 703
MfeI CAATTG 1 cut(s) 990
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 3 cut(s) 300, 430, 883
MluCI AATT 5 cut(s) 98, 822, 978, 990, 999
MlyI GAGTC 3 cut(s) 449, 541, 647
MmeI TCCRAC 1 cut(s) 976
MnlI CCTC 7 cut(s) 120, 326, 531, 534, 704, 714, 766
MseI TTAA 5 cut(s) 591, 821, 981, 1002, 1012
MslI CAYNNNNRTG 3 cut(s) 93, 155, 258
MspI CCGG 2 cut(s) 603, 828
MspR9I CCNGG 5 cut(s) 174, 330, 603, 801, 829
MunI CAATTG 1 cut(s) 990
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 3 cut(s) 174, 330, 801
MwoI GCNNNNNNNGC 3 cut(s) 56, 866, 887
NciI CCSGG 2 cut(s) 603, 829
NdeII GATC 2 cut(s) 76, 607
NlaIII CATG 4 cut(s) 98, 263, 405, 793
NlaIV GGNNCC 3 cut(s) 298, 634, 833
NmuCI GTSAC 2 cut(s) 220, 244
PceI AGGCCT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 478
PflMI CCANNNNNTGG 1 cut(s) 255
PkrI GCNGC 4 cut(s) 562, 691, 862, 892
PleI GAGTC 3 cut(s) 449, 541, 647
PpsI GAGTC 3 cut(s) 449, 541, 647
Psp6I CCWGG 3 cut(s) 172, 328, 799
PspEI GGTNACC 1 cut(s) 518
PspGI CCWGG 3 cut(s) 172, 328, 799
PspN4I GGNNCC 3 cut(s) 298, 634, 833
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 5 cut(s) 176, 296, 297, 797, 832
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 2 cut(s) 376, 761
RsaNI GTAC 2 cut(s) 375, 760
RseI CAYNNNNRTG 3 cut(s) 93, 155, 258
SalI GTCGAC 1 cut(s) 64
SaqAI TTAA 5 cut(s) 591, 821, 981, 1002, 1012
SatI GCNGC 4 cut(s) 561, 690, 861, 891
Sau3AI GATC 2 cut(s) 76, 607
Sau96I GGNCC 5 cut(s) 176, 296, 297, 797, 832
SchI GAGTC 3 cut(s) 449, 541, 647
ScrFI CCNGG 5 cut(s) 174, 330, 603, 801, 829
SduI GDGCHC 3 cut(s) 300, 430, 883
SfaNI GCATC 1 cut(s) 742
SinI GGWCC 2 cut(s) 176, 832
SmiMI CAYNNNNRTG 3 cut(s) 93, 155, 258
Sse9I AATT 5 cut(s) 98, 822, 978, 990, 999
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 3 cut(s) 290, 690, 860
SspMI CTAG 1 cut(s) 29
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 5 cut(s) 172, 328, 601, 799, 827
StyI CCWWGG 2 cut(s) 69, 183
TaaI ACNGT 9 cut(s) 157, 168, 358, 418, 596, 617, 637, 739, 976
TaiI ACGT 2 cut(s) 246, 534
TaqI TCGA 3 cut(s) 65, 235, 847
TasI AATT 5 cut(s) 98, 822, 978, 990, 999
TauI GCSGC 2 cut(s) 692, 863
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 5 cut(s) 591, 821, 981, 1002, 1012
Tru9I TTAA 5 cut(s) 591, 821, 981, 1002, 1012
TscAI CASTG 4 cut(s) 126, 162, 260, 883
TseFI GTSAC 2 cut(s) 220, 244
TseI GCWGC 2 cut(s) 560, 890
Tsp45I GTSAC 2 cut(s) 220, 244
TspDTI ATGAA 3 cut(s) 42, 111, 428
TspGWI ACGGA 2 cut(s) 706, 925
TspRI CASTG 4 cut(s) 126, 162, 260, 883
Van91I CCANNNNNTGG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 879
VpaK11BI GGWCC 2 cut(s) 176, 832
XapI RAATTY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.