Rw1G013990

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001265
Physical Location & Seq
Forward (+)
31155094 .. 31173151
18058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013990.1

Sequence Viewer

Length: 1734 bp
ATGGAGGCACTCAGTAGCATTTTCCTACTAGGCCTTTGCCTTCTCTTTGCTTCATCGGCAATGTCGACCTTGGCCGATCCCAAAGCTCACCACCATGAATTTGTTATCCAAGCAACACCAGTGAAGAGGCTGTGCAAGACCCACAACACCATCACAGTGAATGGACAGTTCCCTGGACCGACCTTGGAAGTAAACAATGGCGACACTCTGGTCGTCAAAGTCACTAACAAAGCTCGATATAATGTCACCATTCACTGGCATGGCATTCGGCAAATGAGAACCGGATGGGCGGATGGGCCCGAGTTTGTTACTCAATGTCCTATTAGACCAGGTAGGAGTTACACCTACCGGTTTACAGTCCAAGGTCAAGAAGGTACTCTGTGGTGGCACGCTCATAGCTCATGGCTTAGAGCCACCGTGTATGGAGCACTTATTATTCATCCAAAACAAGGAGACTCGTATCCATTCCCTAAACCAAATCGTCAAGCAACACTTCTTCTCGGTGAGTGGTGGGACGCTAACCCTATTGACGTGGTGAGGAGAGCAACTCGCACAGGAGCAGCTCCGAATGTTTCTGATGCATACACTATCAACGGTCAACCTGGTGATCTTTACAATTGCTCCAGCAAAGGGACTGTCGTAGTTCCCATAGACTCCGGTGAGACCAACCTACTGAGAGTGATAAACGCCGCCCTCAACCAACCTCTTTTCTTCTCCGTTGCCAACCACAAGCTGACTGTGGTCGGTGCTGATGCCTCCTACACCAAGCGTTTCACCACCAAAGTTCTCATGCTAGGACCCGGCCAGACCACCGATGTTTTAATCACCGGGGACCAGCCACCATCTCGATACTACTTGGCGGCACGTGCCTATTTCAGTGCACAAAACGCTCCATTTGACAACACCACCACCACAGCCATTCTTGAATACAAGTCCGTCCGTTGCAACACTACTAATTGCAAAAAGGGTAGAACAGTAATTAAACCCATAATGCCAAAGCTGCCAGCTTTCAATGACACAAACACTGCATCTGCCTTCACTAAGAGCTTCAGAAGCCCTAGAAAAGTCGAAGTCCCAACTGAAATCGACGAGAACCTCTTCTTCACAATTGGTCTCGGACTCAACAAATGCCCTAAGCACTTTCGATCTAGAAGGTGCCAAGGCCCCAATGGCACACGCTTCACTGCTAGCATGAACAATGTCTCATTTGTGCTTCCAAACAACATGTCAATTCTCCGAGCTTACCAGCAAAACATTCCGGGAGTTTACACTAGTGATTTTCCAGCCAACCCGCCACAGAAATTTGATTACACTGGGAATGTGAGCCGCTCACTTTGGCAACCCAGTTCTGGAACAAAGGGATACAAGTTGAAGTATGGGTCTAGAGTGCAGGTGGTGTTACAAGACACAAGTATTGTCACACCAGAGAACCATCCAATTCATCTTCATGGATACGATTTCTACATCCTTGCAGAGGGTTTTGGAAACTTCAATGCCAAGACTGATACTAAAAAGTTTAATCTTGTTGATCCACCTCTGAGGAATACTGTGTCGGTGCCCGCAAATGGTTGGGCAGTCATCAGATTTGTAGCTGACAATCCAGGTGCTTGGGTGATGCATTGTCACTTGGATGTACATATCAACTGGGGTTTGGCCATGGTTTTCTTGGTGGACAATGGAGTTGGGGAGCTGCAGACAATAGAGCCTCCGCCTGCAGATTTGCCTCTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0042221 GO:0046688 GO:0050896 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

577

Amino Acids

63.97

Weight (kDa)

9.33

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 36 - 150 1.5e-45 Multicopper oxidase
Cu-oxidase PF00394 163 - 311 1.1e-40 Multicopper oxidase
Cu-oxidase_2 PF07731 426 - 559 3.8e-43 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1381
AasI GACNNNNNNGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 1381
AccB1I GGYRCC 2 cut(s) 1155, 1555
AccB7I CCANNNNNTGG 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 1329
AccI GTMKAC 1 cut(s) 65
AciI CCGC 7 cut(s) 290, 690, 860, 1292, 1327, 1560, 1709
AclWI GGATC 2 cut(s) 71, 1523
AcoI YGGCCR 3 cut(s) 72, 802, 1653
AcsI RAATTY 2 cut(s) 98, 1301
AcuI CTGAAG 1 cut(s) 1033
AcvI CACGTG 1 cut(s) 866
AfaI GTAC 2 cut(s) 376, 1635
AfiI CCNNNNNNNGG 6 cut(s) 255, 449, 630, 1349, 1474, 1565
AflIII ACRYGT 1 cut(s) 1224
AgeI ACCGGT 1 cut(s) 348
AgsI TTSAA 4 cut(s) 926, 1012, 1372, 1492
AhlI ACTAGT 1 cut(s) 1271
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 4 cut(s) 172, 328, 601, 1600
Alw21I GWGCWC 2 cut(s) 430, 883
Alw26I GTCTC 4 cut(s) 447, 656, 1118, 1207
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 2 cut(s) 71, 1523
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 6 cut(s) 31, 72, 296, 802, 1162, 1653
ApaI GGGCCC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 3 cut(s) 560, 1000, 1690
ApoI RAATTY 2 cut(s) 98, 1301
ArsI GACNNNNNNTTYG 4 cut(s) 621, 653, 1211, 1243
AsiGI ACCGGT 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 1097
AspS9I GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
AsuC2I CCSGG 3 cut(s) 801, 829, 1260
AsuHPI GGTGA 9 cut(s) 80, 238, 515, 547, 617, 671, 766, 817, 1624
AsuNHI GCTAGC 1 cut(s) 1187
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 3 cut(s) 176, 797, 832
BaeGI GKGCMC 3 cut(s) 300, 883, 1560
BalI TGGCCA 1 cut(s) 1655
BanI GGYRCC 2 cut(s) 1155, 1555
BanII GRGCYC 1 cut(s) 300
BbrPI CACGTG 1 cut(s) 866
Bbv12I GWGCWC 2 cut(s) 430, 883
BbvI GCAGC 3 cut(s) 572, 987, 1677
BccI CCATC 5 cut(s) 158, 279, 287, 850, 1440
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 4 cut(s) 174, 330, 603, 1602
BciVI GTATCC 3 cut(s) 471, 1355, 1445
BcnI CCSGG 3 cut(s) 801, 829, 1260
BcoDI GTCTC 4 cut(s) 447, 656, 1118, 1207
BcuI ACTAGT 1 cut(s) 1271
BfaI CTAG 7 cut(s) 29, 794, 1059, 1149, 1188, 1272, 1383
BfmI CTRYAG 2 cut(s) 1691, 1713
BfuAI ACCTGC 1 cut(s) 1381
BfuI GTATCC 3 cut(s) 471, 1355, 1445
BglI GCCNNNNNGGC 1 cut(s) 1170
BisI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
BlsI GCNGC 6 cut(s) 562, 691, 862, 1002, 1328, 1692
Bme1390I CCNGG 7 cut(s) 174, 330, 603, 801, 829, 1260, 1602
Bme18I GGWCC 3 cut(s) 176, 797, 832
BmeT110I CYCGRG 1 cut(s) 299
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
BmiI GGNNCC 6 cut(s) 298, 799, 833, 1157, 1165, 1557
BmrFI CCNGG 7 cut(s) 174, 330, 603, 801, 829, 1260, 1602
BmrI ACTGGG 3 cut(s) 1323, 1338, 1654
BmsI GCATC 4 cut(s) 568, 742, 1037, 1605
BmtI GCTAGC 1 cut(s) 1191
BmuI ACTGGG 3 cut(s) 1323, 1338, 1654
BoxI GACNNNNGTC 1 cut(s) 740
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 1 cut(s) 607
Bpu10I CCTNAGC 1 cut(s) 1134
BpuMI CCSGG 3 cut(s) 801, 829, 1260
BsaAI YACGTR 1 cut(s) 866
BsaI GGTCTC 2 cut(s) 656, 1118
BsaJI CCNNGG 7 cut(s) 69, 172, 183, 361, 828, 1159, 1656
BsaWI WCCGGW 3 cut(s) 281, 348, 656
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 6 cut(s) 255, 449, 630, 1349, 1474, 1565
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 5 cut(s) 119, 260, 1318, 1344, 1649
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 4 cut(s) 174, 330, 603, 1602
BseDI CCNNGG 7 cut(s) 69, 172, 183, 361, 828, 1159, 1656
BseGI GGATG 6 cut(s) 290, 298, 439, 1432, 1464, 1636
BseLI CCNNNNNNNGG 6 cut(s) 255, 449, 630, 1349, 1474, 1565
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 3 cut(s) 25, 665, 1529
BseNI ACTGG 5 cut(s) 119, 260, 1318, 1344, 1649
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 3 cut(s) 300, 883, 1560
BseXI GCAGC 3 cut(s) 572, 987, 1677
BsgI GTGCAG 1 cut(s) 1409
BshFI GGCC 6 cut(s) 33, 74, 298, 804, 1164, 1655
BshNI GGYRCC 2 cut(s) 1155, 1555
BshTI ACCGGT 1 cut(s) 348
BsiHKAI GWGCWC 2 cut(s) 430, 883
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 6 cut(s) 282, 349, 657, 801, 828, 1259
BslFI GGGAC 4 cut(s) 527, 646, 845, 1058
BslI CCNNNNNNNGG 6 cut(s) 255, 449, 630, 1349, 1474, 1565
BsmAI GTCTC 4 cut(s) 447, 656, 1118, 1207
BsmFI GGGAC 4 cut(s) 527, 646, 845, 1058
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 6 cut(s) 33, 74, 298, 804, 1164, 1655
Bso31I GGTCTC 2 cut(s) 656, 1118
BsoBI CYCGRG 1 cut(s) 299
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 4 cut(s) 300, 430, 883, 1560
Bsp1407I TGTACA 1 cut(s) 1633
Bsp143I GATC 4 cut(s) 76, 607, 1145, 1528
Bsp19I CCATGG 1 cut(s) 1656
BspACI CCGC 7 cut(s) 290, 690, 860, 1292, 1327, 1560, 1709
BspANI GGCC 6 cut(s) 33, 74, 298, 804, 1164, 1655
BspCNI CTCAG 3 cut(s) 24, 666, 1530
BspLI GGNNCC 6 cut(s) 298, 799, 833, 1157, 1165, 1557
BspMAI CTGCAG 2 cut(s) 1695, 1717
BspMI ACCTGC 1 cut(s) 1381
BspOI GCTAGC 1 cut(s) 1191
BspPI GGATC 2 cut(s) 71, 1523
BspT107I GGYRCC 2 cut(s) 1155, 1555
BspTNI GGTCTC 2 cut(s) 656, 1118
BsrBI CCGCTC 1 cut(s) 1329
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 348
BsrGI TGTACA 1 cut(s) 1633
BsrI ACTGG 5 cut(s) 119, 260, 1318, 1344, 1649
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 7 cut(s) 69, 172, 183, 361, 828, 1159, 1656
BssMI GATC 4 cut(s) 76, 607, 1145, 1528
BssT1I CCWWGG 5 cut(s) 69, 183, 361, 1159, 1656
Bst2UI CCWGG 4 cut(s) 174, 330, 603, 1602
Bst4CI ACNGT 9 cut(s) 157, 168, 358, 418, 596, 637, 739, 976, 1549
Bst6I CTCTTC 2 cut(s) 119, 1103
BstAUI TGTACA 1 cut(s) 1633
BstBAI YACGTR 1 cut(s) 866
BstC8I GCNNGC 5 cut(s) 390, 1005, 1189, 1560, 1713
BstDEI CTNAG 6 cut(s) 11, 407, 674, 1041, 1134, 1538
BstDSI CCRYGG 1 cut(s) 1656
BstENI CCTNNNNNAGG 1 cut(s) 1472
BstF5I GGATG 6 cut(s) 290, 298, 439, 1432, 1464, 1636
BstKTI GATC 4 cut(s) 79, 610, 1148, 1531
BstMAI GTCTC 4 cut(s) 447, 656, 1118, 1207
BstMBI GATC 4 cut(s) 76, 607, 1145, 1528
BstMWI GCNNNNNNNGC 6 cut(s) 56, 866, 887, 1000, 1053, 1170
BstNI CCWGG 4 cut(s) 174, 330, 603, 1602
BstNSI RCATGY 1 cut(s) 1228
BstPAI GACNNNNGTC 1 cut(s) 740
BstSCI CCNGG 7 cut(s) 172, 328, 601, 799, 827, 1258, 1600
BstSFI CTRYAG 2 cut(s) 1691, 1713
BstSLI GKGCMC 3 cut(s) 300, 883, 1560
BstV1I GCAGC 3 cut(s) 572, 987, 1677
BstXI CCANNNNNNTGG 1 cut(s) 1608
BsuI GTATCC 3 cut(s) 471, 1355, 1445
BsuRI GGCC 6 cut(s) 33, 74, 298, 804, 1164, 1655
BtgI CCRYGG 1 cut(s) 1656
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 6 cut(s) 290, 298, 439, 1432, 1464, 1636
BtsI GCAGTG 2 cut(s) 1023, 1182
BtsIMutI CAGTG 7 cut(s) 126, 162, 253, 883, 1023, 1182, 1311
BveI ACCTGC 1 cut(s) 1381
Cac8I GCNNGC 5 cut(s) 390, 1005, 1189, 1560, 1713
Cfr10I RCCGGY 1 cut(s) 348
Cfr13I GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
CseI GACGC 1 cut(s) 524
CsiI ACCWGGT 2 cut(s) 328, 601
Csp6I GTAC 2 cut(s) 375, 1634
CspAI ACCGGT 1 cut(s) 348
CviAII CATG 8 cut(s) 95, 260, 402, 790, 1192, 1225, 1448, 1657
CviQI GTAC 2 cut(s) 375, 1634
DdeI CTNAG 6 cut(s) 11, 407, 674, 1041, 1134, 1538
DpnI GATC 4 cut(s) 78, 609, 1147, 1530
DpnII GATC 4 cut(s) 76, 607, 1145, 1528
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 3 cut(s) 72, 802, 1653
Eam1104I CTCTTC 2 cut(s) 119, 1103
EarI CTCTTC 2 cut(s) 119, 1103
EciI GGCGGA 2 cut(s) 305, 1698
Eco130I CCWWGG 5 cut(s) 69, 183, 361, 1159, 1656
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 2 cut(s) 656, 1118
Eco47I GGWCC 3 cut(s) 176, 797, 832
Eco57I CTGAAG 1 cut(s) 1033
Eco72I CACGTG 1 cut(s) 866
Eco88I CYCGRG 1 cut(s) 299
EcoNI CCTNNNNNAGG 1 cut(s) 1472
EcoO109I RGGNCCY 2 cut(s) 797, 1163
EcoRII CCWGG 4 cut(s) 172, 328, 601, 1600
EcoT14I CCWWGG 5 cut(s) 69, 183, 361, 1159, 1656
EcoT22I ATGCAT 2 cut(s) 583, 1620
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 5 cut(s) 69, 183, 361, 1159, 1656
FaeI CATG 8 cut(s) 98, 263, 405, 793, 1195, 1228, 1451, 1660
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 4 cut(s) 527, 646, 845, 1058
FatI CATG 8 cut(s) 94, 259, 401, 789, 1191, 1224, 1447, 1656
FauI CCCGC 2 cut(s) 1299, 1567
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
FokI GGATG 6 cut(s) 297, 305, 426, 1419, 1451, 1643
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
FspBI CTAG 7 cut(s) 29, 794, 1059, 1149, 1188, 1272, 1383
GluI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
GsuI CTGGAG 1 cut(s) 607
HaeIII GGCC 6 cut(s) 33, 74, 298, 804, 1164, 1655
HapII CCGG 6 cut(s) 282, 349, 657, 801, 828, 1259
HgaI GACGC 1 cut(s) 524
Hin1II CATG 8 cut(s) 98, 263, 405, 793, 1195, 1228, 1451, 1660
HincII GTYRAC 2 cut(s) 66, 599
HindII GTYRAC 2 cut(s) 66, 599
HinfI GANTC 3 cut(s) 455, 653, 1119
HpaII CCGG 6 cut(s) 282, 349, 657, 801, 828, 1259
HphI GGTGA 9 cut(s) 80, 238, 515, 547, 617, 671, 766, 817, 1624
Hpy166II GTNNAC 7 cut(s) 66, 193, 354, 599, 881, 1267, 1672
Hpy188I TCNGA 7 cut(s) 567, 577, 1052, 1118, 1238, 1539, 1583
Hpy188III TCNNGA 6 cut(s) 368, 846, 923, 1149, 1350, 1383
Hpy8I GTNNAC 7 cut(s) 66, 193, 354, 599, 881, 1267, 1672
Hpy99I CGWCG 1 cut(s) 1091
HpyAV CCTTC 4 cut(s) 50, 365, 1045, 1146
HpyCH4III ACNGT 9 cut(s) 157, 168, 358, 418, 596, 637, 739, 976, 1549
HpyCH4IV ACGT 2 cut(s) 531, 865
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 866, 887, 1000, 1053, 1170
HpyF3I CTNAG 6 cut(s) 11, 407, 674, 1041, 1134, 1538
HpySE526I ACGT 2 cut(s) 531, 865
Hsp92II CATG 8 cut(s) 98, 263, 405, 793, 1195, 1228, 1451, 1660
Kzo9I GATC 4 cut(s) 76, 607, 1145, 1528
LmnI GCTCC 6 cut(s) 425, 557, 568, 626, 895, 1687
Lsp1109I GCAGC 3 cut(s) 572, 987, 1677
LweI GCATC 4 cut(s) 568, 742, 1037, 1605
MabI ACCWGGT 2 cut(s) 328, 601
MaeI CTAG 7 cut(s) 29, 794, 1059, 1149, 1188, 1272, 1383
MaeII ACGT 2 cut(s) 531, 865
MaeIII GTNAC 7 cut(s) 220, 244, 307, 338, 1398, 1417, 1622
MalI GATC 4 cut(s) 78, 609, 1147, 1530
MbiI CCGCTC 1 cut(s) 1329
MboI GATC 4 cut(s) 76, 607, 1145, 1528
MboII GAAGA 6 cut(s) 136, 488, 703, 1090, 1093, 1436
MfeI CAATTG 2 cut(s) 616, 1107
MhlI GDGCHC 4 cut(s) 300, 430, 883, 1560
MlsI TGGCCA 1 cut(s) 1655
MluCI AATT 8 cut(s) 98, 616, 955, 978, 1107, 1230, 1301, 1437
MluNI TGGCCA 1 cut(s) 1655
MlyI GAGTC 3 cut(s) 449, 647, 1113
Mox20I TGGCCA 1 cut(s) 1655
Mph1103I ATGCAT 2 cut(s) 583, 1620
MroXI GAANNNNTTC 1 cut(s) 1097
MscI TGGCCA 1 cut(s) 1655
MseI TTAA 4 cut(s) 821, 981, 1518, 1732
MslI CAYNNNNRTG 5 cut(s) 93, 155, 258, 1446, 1629
Msp20I TGGCCA 1 cut(s) 1655
MspI CCGG 6 cut(s) 282, 349, 657, 801, 828, 1259
MspR9I CCNGG 7 cut(s) 174, 330, 603, 801, 829, 1260, 1602
MunI CAATTG 2 cut(s) 616, 1107
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 4 cut(s) 174, 330, 603, 1602
MwoI GCNNNNNNNGC 6 cut(s) 56, 866, 887, 1000, 1053, 1170
NciI CCSGG 3 cut(s) 801, 829, 1260
NcoI CCATGG 1 cut(s) 1656
NdeII GATC 4 cut(s) 76, 607, 1145, 1528
NheI GCTAGC 1 cut(s) 1187
NlaIII CATG 8 cut(s) 98, 263, 405, 793, 1195, 1228, 1451, 1660
NlaIV GGNNCC 6 cut(s) 298, 799, 833, 1157, 1165, 1557
NmuCI GTSAC 4 cut(s) 220, 244, 1417, 1622
NsiI ATGCAT 2 cut(s) 583, 1620
NspI RCATGY 1 cut(s) 1228
PaqCI CACCTGC 1 cut(s) 1381
PceI AGGCCT 1 cut(s) 33
PciI ACATGT 1 cut(s) 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PctI GAATGC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 1097
PflMI CCANNNNNTGG 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 1258
PinAI ACCGGT 1 cut(s) 348
PkrI GCNGC 6 cut(s) 562, 691, 862, 1002, 1328, 1692
PleI GAGTC 3 cut(s) 449, 647, 1113
PmaCI CACGTG 1 cut(s) 866
PmlI CACGTG 1 cut(s) 866
PpsI GAGTC 3 cut(s) 449, 647, 1113
Ppu21I YACGTR 1 cut(s) 866
PpuMI RGGWCCY 1 cut(s) 797
PscI ACATGT 1 cut(s) 1224
PshAI GACNNNNGTC 1 cut(s) 740
Psp5II RGGWCCY 1 cut(s) 797
Psp6I CCWGG 4 cut(s) 172, 328, 601, 1600
PspCI CACGTG 1 cut(s) 866
PspGI CCWGG 4 cut(s) 172, 328, 601, 1600
PspN4I GGNNCC 6 cut(s) 298, 799, 833, 1157, 1165, 1557
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
PspPPI RGGWCCY 1 cut(s) 797
PstI CTGCAG 2 cut(s) 1695, 1717
RsaI GTAC 2 cut(s) 376, 1635
RsaNI GTAC 2 cut(s) 375, 1634
RseI CAYNNNNRTG 5 cut(s) 93, 155, 258, 1446, 1629
SalI GTCGAC 1 cut(s) 64
SaqAI TTAA 4 cut(s) 821, 981, 1518, 1732
SatI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
Sau3AI GATC 4 cut(s) 76, 607, 1145, 1528
Sau96I GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
SchI GAGTC 3 cut(s) 449, 647, 1113
ScrFI CCNGG 7 cut(s) 174, 330, 603, 801, 829, 1260, 1602
SduI GDGCHC 4 cut(s) 300, 430, 883, 1560
SexAI ACCWGGT 2 cut(s) 328, 601
SfaNI GCATC 4 cut(s) 568, 742, 1037, 1605
SfcI CTRYAG 2 cut(s) 1691, 1713
SinI GGWCC 3 cut(s) 176, 797, 832
SmiMI CAYNNNNRTG 5 cut(s) 93, 155, 258, 1446, 1629
SpeI ACTAGT 1 cut(s) 1271
Sse9I AATT 8 cut(s) 98, 616, 955, 978, 1107, 1230, 1301, 1437
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 7 cut(s) 290, 690, 860, 1292, 1327, 1560, 1709
SspMI CTAG 7 cut(s) 29, 794, 1059, 1149, 1188, 1272, 1383
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 7 cut(s) 172, 328, 601, 799, 827, 1258, 1600
StyI CCWWGG 5 cut(s) 69, 183, 361, 1159, 1656
TaaI ACNGT 9 cut(s) 157, 168, 358, 418, 596, 637, 739, 976, 1549
TaiI ACGT 2 cut(s) 534, 868
TaqI TCGA 6 cut(s) 65, 235, 847, 1068, 1086, 1144
TaqII GACCGA 1 cut(s) 193
TasI AATT 8 cut(s) 98, 616, 955, 978, 1107, 1230, 1301, 1437
TatI WGTACW 1 cut(s) 1633
TauI GCSGC 3 cut(s) 692, 863, 1329
Tru1I TTAA 4 cut(s) 821, 981, 1518, 1732
Tru9I TTAA 4 cut(s) 821, 981, 1518, 1732
TscAI CASTG 7 cut(s) 126, 162, 260, 883, 1030, 1189, 1318
TseFI GTSAC 4 cut(s) 220, 244, 1417, 1622
TseI GCWGC 3 cut(s) 560, 1000, 1690
Tsp45I GTSAC 4 cut(s) 220, 244, 1417, 1622
TspDTI ATGAA 6 cut(s) 42, 111, 428, 1208, 1430, 1436
TspGWI ACGGA 3 cut(s) 706, 925, 929
TspRI CASTG 7 cut(s) 126, 162, 260, 883, 1030, 1189, 1318
Van91I CCANNNNNTGG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 879
VpaK11BI GGWCC 3 cut(s) 176, 797, 832
XagI CCTNNNNNAGG 1 cut(s) 1472
XapI RAATTY 2 cut(s) 98, 1301
XbaI TCTAGA 2 cut(s) 1148, 1382
XceI RCATGY 1 cut(s) 1228
XcmI CCANNNNNNNNNTGG 2 cut(s) 1166, 1663
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 1097
XspI CTAG 7 cut(s) 29, 794, 1059, 1149, 1188, 1272, 1383
Zsp2I ATGCAT 2 cut(s) 583, 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.