Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 6 - 96 | 5.6e-23 | Rx N-terminal domain |
| NB-ARC | PF00931 | 185 - 354 | 1.8e-36 | NB-ARC domain |
| WHD_DRP | PF23559 | 443 - 514 | 5.3e-19 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 563 - 769 | 2.9e-13 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 698 - 834 | 3e-06 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1680 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 692 |
| AatII | GACGTC | 1 cut(s) | 2288 |
| Acc16I | TGCGCA | 1 cut(s) | 1175 |
| Acc36I | ACCTGC | 1 cut(s) | 1917 |
| Acc65I | GGTACC | 1 cut(s) | 785 |
| AccB1I | GGYRCC | 1 cut(s) | 785 |
| AciI | CCGC | 4 cut(s) | 118, 1459, 2165, 2267 |
| AclI | AACGTT | 1 cut(s) | 1303 |
| AclWI | GGATC | 1 cut(s) | 1003 |
| AcoI | YGGCCR | 1 cut(s) | 370 |
| AcsI | RAATTY | 4 cut(s) | 813, 1518, 1806, 2222 |
| AcuI | CTGAAG | 2 cut(s) | 231, 276 |
| AcyI | GRCGYC | 1 cut(s) | 2285 |
| AfaI | GTAC | 7 cut(s) | 261, 787, 1346, 1533, 1693, 1743, 2507 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 58, 635, 1018, 2273 |
| AflIII | ACRYGT | 1 cut(s) | 234 |
| AhlI | ACTAGT | 1 cut(s) | 13 |
| AjiI | CACGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 2 cut(s) | 1890, 2272 |
| Alw21I | GWGCWC | 1 cut(s) | 147 |
| Alw26I | GTCTC | 8 cut(s) | 157, 181, 496, 736, 1802, 1808, 1946, 2329 |
| AlwI | GGATC | 1 cut(s) | 1003 |
| Ama87I | CYCGRG | 2 cut(s) | 146, 1811 |
| AoxI | GGCC | 4 cut(s) | 177, 370, 1720, 2625 |
| ApeKI | GCWGC | 4 cut(s) | 1148, 1896, 2174, 2177 |
| ApoI | RAATTY | 4 cut(s) | 813, 1518, 1806, 2222 |
| AseI | ATTAAT | 1 cut(s) | 911 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 132, 261, 1806 |
| Asp718I | GGTACC | 1 cut(s) | 785 |
| AspLEI | GCGC | 2 cut(s) | 1176, 1889 |
| AspS9I | GGNCC | 3 cut(s) | 736, 1721, 2625 |
| AvaI | CYCGRG | 2 cut(s) | 146, 1811 |
| AvaII | GGWCC | 1 cut(s) | 736 |
| BanI | GGYRCC | 1 cut(s) | 785 |
| BanII | GRGCYC | 1 cut(s) | 887 |
| BbsI | GAAGAC | 3 cut(s) | 1872, 2370, 2552 |
| Bbv12I | GWGCWC | 1 cut(s) | 147 |
| BbvI | GCAGC | 4 cut(s) | 1135, 1908, 2186, 2189 |
| BccI | CCATC | 4 cut(s) | 634, 2066, 2354, 2657 |
| BciT130I | CCWGG | 2 cut(s) | 1892, 2274 |
| BcoDI | GTCTC | 8 cut(s) | 157, 181, 496, 736, 1802, 1808, 1946, 2329 |
| BcuI | ACTAGT | 1 cut(s) | 13 |
| BfaI | CTAG | 6 cut(s) | 14, 782, 1584, 1674, 2051, 2219 |
| BfmI | CTRYAG | 1 cut(s) | 2555 |
| BfoI | RGCGCY | 1 cut(s) | 1890 |
| BfuAI | ACCTGC | 1 cut(s) | 1917 |
| BglII | AGATCT | 2 cut(s) | 2038, 2098 |
| BisI | GCNGC | 5 cut(s) | 1149, 1897, 2175, 2178, 2267 |
| BlsI | GCNGC | 5 cut(s) | 1150, 1898, 2176, 2179, 2268 |
| BmcAI | AGTACT | 1 cut(s) | 261 |
| Bme1390I | CCNGG | 2 cut(s) | 1892, 2274 |
| Bme18I | GGWCC | 1 cut(s) | 736 |
| BmeT110I | CYCGRG | 2 cut(s) | 146, 1811 |
| BmgBI | CACGTC | 1 cut(s) | 235 |
| BmgT120I | GGNCC | 3 cut(s) | 736, 1721, 2625 |
| BmiI | GGNNCC | 4 cut(s) | 615, 738, 787, 884 |
| BmrFI | CCNGG | 2 cut(s) | 1892, 2274 |
| BmsI | GCATC | 6 cut(s) | 142, 810, 1570, 1990, 2161, 2278 |
| BpiI | GAAGAC | 3 cut(s) | 1872, 2370, 2552 |
| BpmI | CTGGAG | 2 cut(s) | 50, 1275 |
| BpuEI | CTTGAG | 2 cut(s) | 1792, 1996 |
| BsaAI | YACGTR | 2 cut(s) | 926, 1691 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1353 |
| BsaHI | GRCGYC | 1 cut(s) | 2285 |
| BsaI | GGTCTC | 3 cut(s) | 496, 1802, 1946 |
| BsaJI | CCNNGG | 5 cut(s) | 174, 1756, 1890, 1891, 2273 |
| BsaWI | WCCGGW | 1 cut(s) | 1856 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 58, 635, 1018, 2273 |
| Bse1I | ACTGG | 2 cut(s) | 84, 91 |
| Bse3DI | GCAATG | 4 cut(s) | 830, 1138, 1506, 2297 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1353 |
| BseBI | CCWGG | 2 cut(s) | 1892, 2274 |
| BseDI | CCNNGG | 5 cut(s) | 174, 1756, 1890, 1891, 2273 |
| BseJI | GATNNNNATC | 1 cut(s) | 1353 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 58, 635, 1018, 2273 |
| BseMI | GCAATG | 4 cut(s) | 830, 1138, 1506, 2297 |
| BseMII | CTCAG | 2 cut(s) | 188, 2504 |
| BseNI | ACTGG | 2 cut(s) | 84, 91 |
| BseRI | GAGGAG | 3 cut(s) | 81, 986, 2633 |
| BseXI | GCAGC | 4 cut(s) | 1135, 1908, 2186, 2189 |
| BseYI | CCCAGC | 2 cut(s) | 1883, 2230 |
| Bsh1285I | CGRYCG | 1 cut(s) | 550 |
| BshFI | GGCC | 4 cut(s) | 179, 372, 1722, 2627 |
| BshNI | GGYRCC | 1 cut(s) | 785 |
| BsiEI | CGRYCG | 1 cut(s) | 550 |
| BsiHKAI | GWGCWC | 1 cut(s) | 147 |
| BsiHKCI | CYCGRG | 2 cut(s) | 146, 1811 |
| BsiSI | CCGG | 2 cut(s) | 1857, 2531 |
| BslFI | GGGAC | 2 cut(s) | 1774, 2272 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 58, 635, 1018, 2273 |
| BsmAI | GTCTC | 8 cut(s) | 157, 181, 496, 736, 1802, 1808, 1946, 2329 |
| BsmBI | CGTCTC | 2 cut(s) | 181, 1808 |
| BsmFI | GGGAC | 2 cut(s) | 1774, 2272 |
| BsmI | GAATGC | 2 cut(s) | 1399, 2176 |
| BsnI | GGCC | 4 cut(s) | 179, 372, 1722, 2627 |
| Bso31I | GGTCTC | 3 cut(s) | 496, 1802, 1946 |
| BsoBI | CYCGRG | 2 cut(s) | 146, 1811 |
| Bsp1286I | GDGCHC | 2 cut(s) | 147, 887 |
| Bsp1407I | TGTACA | 1 cut(s) | 1531 |
| Bsp143I | GATC | 4 cut(s) | 45, 1008, 2038, 2098 |
| BspACI | CCGC | 4 cut(s) | 118, 1459, 2165, 2267 |
| BspANI | GGCC | 4 cut(s) | 179, 372, 1722, 2627 |
| BspCNI | CTCAG | 2 cut(s) | 189, 2503 |
| BspHI | TCATGA | 4 cut(s) | 397, 1192, 1279, 1522 |
| BspLI | GGNNCC | 4 cut(s) | 615, 738, 787, 884 |
| BspMI | ACCTGC | 1 cut(s) | 1917 |
| BspPI | GGATC | 1 cut(s) | 1003 |
| BspT107I | GGYRCC | 1 cut(s) | 785 |
| BspTNI | GGTCTC | 3 cut(s) | 496, 1802, 1946 |
| BsrDI | GCAATG | 4 cut(s) | 830, 1138, 1506, 2297 |
| BsrGI | TGTACA | 1 cut(s) | 1531 |
| BsrI | ACTGG | 2 cut(s) | 84, 91 |
| BssECI | CCNNGG | 5 cut(s) | 174, 1756, 1890, 1891, 2273 |
| BssMI | GATC | 4 cut(s) | 45, 1008, 2038, 2098 |
| BssNI | GRCGYC | 1 cut(s) | 2285 |
| BssT1I | CCWWGG | 1 cut(s) | 1756 |
| Bst2UI | CCWGG | 2 cut(s) | 1892, 2274 |
| Bst4CI | ACNGT | 2 cut(s) | 184, 1423 |
| Bst6I | CTCTTC | 2 cut(s) | 531, 2436 |
| BstACI | GRCGYC | 1 cut(s) | 2285 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1918 |
| BstAUI | TGTACA | 1 cut(s) | 1531 |
| BstBAI | YACGTR | 2 cut(s) | 926, 1691 |
| BstC8I | GCNNGC | 3 cut(s) | 1203, 1513, 1638 |
| BstDEI | CTNAG | 6 cut(s) | 197, 324, 1271, 1450, 1630, 2490 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 56, 633 |
| BstH2I | RGCGCY | 1 cut(s) | 1890 |
| BstHHI | GCGC | 2 cut(s) | 1176, 1889 |
| BstKTI | GATC | 4 cut(s) | 48, 1011, 2041, 2101 |
| BstMAI | GTCTC | 8 cut(s) | 157, 181, 496, 736, 1802, 1808, 1946, 2329 |
| BstMBI | GATC | 4 cut(s) | 45, 1008, 2038, 2098 |
| BstMCI | CGRYCG | 1 cut(s) | 550 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 117, 137, 446, 1173, 1893, 1918, 2171 |
| BstNI | CCWGG | 2 cut(s) | 1892, 2274 |
| BstNSI | RCATGY | 2 cut(s) | 1515, 1640 |
| BstSCI | CCNGG | 2 cut(s) | 1890, 2272 |
| BstSFI | CTRYAG | 1 cut(s) | 2555 |
| BstSNI | TACGTA | 2 cut(s) | 926, 1691 |
| BstV1I | GCAGC | 4 cut(s) | 1135, 1908, 2186, 2189 |
| BstV2I | GAAGAC | 3 cut(s) | 1872, 2370, 2552 |
| BstX2I | RGATCY | 2 cut(s) | 2038, 2098 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1891 |
| BstYI | RGATCY | 2 cut(s) | 2038, 2098 |
| BsuRI | GGCC | 4 cut(s) | 179, 372, 1722, 2627 |
| BtrI | CACGTC | 1 cut(s) | 235 |
| BtsI | GCAGTG | 1 cut(s) | 2525 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 2525 |
| BveI | ACCTGC | 1 cut(s) | 1917 |
| Cac8I | GCNNGC | 3 cut(s) | 1203, 1513, 1638 |
| CciI | TCATGA | 4 cut(s) | 397, 1192, 1279, 1522 |
| CfoI | GCGC | 2 cut(s) | 1176, 1889 |
| Cfr13I | GGNCC | 3 cut(s) | 736, 1721, 2625 |
| Csp6I | GTAC | 7 cut(s) | 260, 786, 1345, 1532, 1692, 1742, 2506 |
| CviQI | GTAC | 7 cut(s) | 260, 786, 1345, 1532, 1692, 1742, 2506 |
| DdeI | CTNAG | 6 cut(s) | 197, 324, 1271, 1450, 1630, 2490 |
| DpnI | GATC | 4 cut(s) | 47, 1010, 2040, 2100 |
| DpnII | GATC | 4 cut(s) | 45, 1008, 2038, 2098 |
| DraI | TTTAAA | 2 cut(s) | 1099, 1212 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 692 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 692 |
| EaeI | YGGCCR | 1 cut(s) | 370 |
| Eam1104I | CTCTTC | 2 cut(s) | 531, 2436 |
| EarI | CTCTTC | 2 cut(s) | 531, 2436 |
| EciI | GGCGGA | 1 cut(s) | 2180 |
| Eco105I | TACGTA | 2 cut(s) | 926, 1691 |
| Eco130I | CCWWGG | 1 cut(s) | 1756 |
| Eco24I | GRGCYC | 1 cut(s) | 887 |
| Eco31I | GGTCTC | 3 cut(s) | 496, 1802, 1946 |
| Eco32I | GATATC | 1 cut(s) | 1701 |
| Eco47I | GGWCC | 1 cut(s) | 736 |
| Eco57I | CTGAAG | 2 cut(s) | 231, 276 |
| Eco88I | CYCGRG | 2 cut(s) | 146, 1811 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 56, 633 |
| EcoRI | GAATTC | 1 cut(s) | 2222 |
| EcoRII | CCWGG | 2 cut(s) | 1890, 2272 |
| EcoRV | GATATC | 1 cut(s) | 1701 |
| EcoT14I | CCWWGG | 1 cut(s) | 1756 |
| EcoT38I | GRGCYC | 1 cut(s) | 887 |
| ErhI | CCWWGG | 1 cut(s) | 1756 |
| Esp3I | CGTCTC | 2 cut(s) | 181, 1808 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 323, 355, 424, 456, 2115, 2147 |
| FaqI | GGGAC | 2 cut(s) | 1774, 2272 |
| FauI | CCCGC | 1 cut(s) | 125 |
| Fnu4HI | GCNGC | 5 cut(s) | 1149, 1897, 2175, 2178, 2267 |
| FriOI | GRGCYC | 1 cut(s) | 887 |
| Fsp4HI | GCNGC | 5 cut(s) | 1149, 1897, 2175, 2178, 2267 |
| FspBI | CTAG | 6 cut(s) | 14, 782, 1584, 1674, 2051, 2219 |
| FspI | TGCGCA | 1 cut(s) | 1175 |
| GlaI | GCGC | 2 cut(s) | 1175, 1888 |
| GluI | GCNGC | 5 cut(s) | 1149, 1897, 2175, 2178, 2267 |
| GsaI | CCCAGC | 2 cut(s) | 1887, 2234 |
| GsuI | CTGGAG | 2 cut(s) | 50, 1275 |
| HaeII | RGCGCY | 1 cut(s) | 1890 |
| HaeIII | GGCC | 4 cut(s) | 179, 372, 1722, 2627 |
| HapII | CCGG | 2 cut(s) | 1857, 2531 |
| HhaI | GCGC | 2 cut(s) | 1176, 1889 |
| Hin1I | GRCGYC | 1 cut(s) | 2285 |
| Hin6I | GCGC | 2 cut(s) | 1174, 1887 |
| HinP1I | GCGC | 2 cut(s) | 1174, 1887 |
| HincII | GTYRAC | 3 cut(s) | 19, 1605, 2496 |
| HindII | GTYRAC | 3 cut(s) | 19, 1605, 2496 |
| HindIII | AAGCTT | 1 cut(s) | 2402 |
| HpaII | CCGG | 2 cut(s) | 1857, 2531 |
| Hpy166II | GTNNAC | 5 cut(s) | 19, 203, 1345, 1605, 2496 |
| Hpy188I | TCNGA | 6 cut(s) | 65, 496, 736, 2069, 2103, 2310 |
| Hpy8I | GTNNAC | 5 cut(s) | 19, 203, 1345, 1605, 2496 |
| Hpy99I | CGWCG | 2 cut(s) | 1782, 2377 |
| HpyCH4III | ACNGT | 2 cut(s) | 184, 1423 |
| HpyCH4IV | ACGT | 8 cut(s) | 21, 190, 234, 925, 1157, 1303, 1690, 2285 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 117, 137, 446, 1173, 1893, 1918, 2171 |
| HpyF3I | CTNAG | 6 cut(s) | 197, 324, 1271, 1450, 1630, 2490 |
| HpySE526I | ACGT | 8 cut(s) | 21, 190, 234, 925, 1157, 1303, 1690, 2285 |
| Hsp92I | GRCGYC | 1 cut(s) | 2285 |
| HspAI | GCGC | 2 cut(s) | 1174, 1887 |
| KpnI | GGTACC | 1 cut(s) | 789 |
| Kzo9I | GATC | 4 cut(s) | 45, 1008, 2038, 2098 |
| LmnI | GCTCC | 3 cut(s) | 31, 882, 2453 |
| Lsp1109I | GCAGC | 4 cut(s) | 1135, 1908, 2186, 2189 |
| LweI | GCATC | 6 cut(s) | 142, 810, 1570, 1990, 2161, 2278 |
| MaeI | CTAG | 6 cut(s) | 14, 782, 1584, 1674, 2051, 2219 |
| MaeII | ACGT | 8 cut(s) | 21, 190, 234, 925, 1157, 1303, 1690, 2285 |
| MaeIII | GTNAC | 6 cut(s) | 82, 169, 316, 955, 1321, 1377 |
| MalI | GATC | 4 cut(s) | 47, 1010, 2040, 2100 |
| MboI | GATC | 4 cut(s) | 45, 1008, 2038, 2098 |
| MfeI | CAATTG | 2 cut(s) | 1745, 2210 |
| MflI | RGATCY | 2 cut(s) | 2038, 2098 |
| MhlI | GDGCHC | 2 cut(s) | 147, 887 |
| MlyI | GAGTC | 5 cut(s) | 1282, 1783, 2137, 2331, 2432 |
| MmeI | TCCRAC | 4 cut(s) | 43, 219, 2047, 2073 |
| MroXI | GAANNNNTTC | 3 cut(s) | 132, 261, 1806 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1986 |
| MspA1I | CMGCKG | 1 cut(s) | 2234 |
| MspI | CCGG | 2 cut(s) | 1857, 2531 |
| MspR9I | CCNGG | 2 cut(s) | 1892, 2274 |
| MunI | CAATTG | 2 cut(s) | 1745, 2210 |
| Mva1269I | GAATGC | 2 cut(s) | 1399, 2176 |
| MvaI | CCWGG | 2 cut(s) | 1892, 2274 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 117, 137, 446, 1173, 1893, 1918, 2171 |
| NdeII | GATC | 4 cut(s) | 45, 1008, 2038, 2098 |
| NlaIV | GGNNCC | 4 cut(s) | 615, 738, 787, 884 |
| NmuCI | GTSAC | 4 cut(s) | 82, 169, 955, 1377 |
| NsbI | TGCGCA | 1 cut(s) | 1175 |
| NspI | RCATGY | 2 cut(s) | 1515, 1640 |
| PaeI | GCATGC | 2 cut(s) | 1515, 1640 |
| PaeR7I | CTCGAG | 1 cut(s) | 146 |
| PagI | TCATGA | 4 cut(s) | 397, 1192, 1279, 1522 |
| PasI | CCCWGGG | 1 cut(s) | 1891 |
| PctI | GAATGC | 2 cut(s) | 1399, 2176 |
| PdmI | GAANNNNTTC | 3 cut(s) | 132, 261, 1806 |
| PfeI | GAWTC | 5 cut(s) | 797, 1189, 1240, 1652, 2294 |
| PflFI | GACNNNGTC | 1 cut(s) | 59 |
| PkrI | GCNGC | 5 cut(s) | 1150, 1898, 2176, 2179, 2268 |
| PleI | GAGTC | 5 cut(s) | 1282, 1782, 2136, 2330, 2431 |
| PpsI | GAGTC | 5 cut(s) | 1282, 1782, 2136, 2330, 2431 |
| Ppu21I | YACGTR | 2 cut(s) | 926, 1691 |
| PshBI | ATTAAT | 1 cut(s) | 911 |
| PsiI | TTATAA | 1 cut(s) | 1680 |
| Psp1406I | AACGTT | 1 cut(s) | 1303 |
| Psp6I | CCWGG | 2 cut(s) | 1890, 2272 |
| PspFI | CCCAGC | 2 cut(s) | 1883, 2230 |
| PspGI | CCWGG | 2 cut(s) | 1890, 2272 |
| PspN4I | GGNNCC | 4 cut(s) | 615, 738, 787, 884 |
| PspPI | GGNCC | 3 cut(s) | 736, 1721, 2625 |
| PspXI | VCTCGAGB | 1 cut(s) | 146 |
| PsuI | RGATCY | 2 cut(s) | 2038, 2098 |
| PsyI | GACNNNGTC | 1 cut(s) | 59 |
| PvuII | CAGCTG | 1 cut(s) | 2234 |
| RsaI | GTAC | 7 cut(s) | 261, 787, 1346, 1533, 1693, 1743, 2507 |
| RsaNI | GTAC | 7 cut(s) | 260, 786, 1345, 1532, 1692, 1742, 2506 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1986 |
| SatI | GCNGC | 5 cut(s) | 1149, 1897, 2175, 2178, 2267 |
| Sau3AI | GATC | 4 cut(s) | 45, 1008, 2038, 2098 |
| Sau96I | GGNCC | 3 cut(s) | 736, 1721, 2625 |
| ScaI | AGTACT | 1 cut(s) | 261 |
| SchI | GAGTC | 5 cut(s) | 1282, 1783, 2137, 2331, 2432 |
| ScrFI | CCNGG | 2 cut(s) | 1892, 2274 |
| SduI | GDGCHC | 2 cut(s) | 147, 887 |
| SfaNI | GCATC | 6 cut(s) | 142, 810, 1570, 1990, 2161, 2278 |
| SfcI | CTRYAG | 1 cut(s) | 2555 |
| Sfr274I | CTCGAG | 1 cut(s) | 146 |
| SinI | GGWCC | 1 cut(s) | 736 |
| SlaI | CTCGAG | 1 cut(s) | 146 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1986 |
| SmlI | CTYRAG | 3 cut(s) | 146, 1771, 1975 |
| SmoI | CTYRAG | 3 cut(s) | 146, 1771, 1975 |
| SnaBI | TACGTA | 2 cut(s) | 926, 1691 |
| SpeI | ACTAGT | 1 cut(s) | 13 |
| SphI | GCATGC | 2 cut(s) | 1515, 1640 |
| SsiI | CCGC | 4 cut(s) | 118, 1459, 2165, 2267 |
| SspI | AATATT | 3 cut(s) | 1498, 1550, 2467 |
| SspMI | CTAG | 6 cut(s) | 14, 782, 1584, 1674, 2051, 2219 |
| StyD4I | CCNGG | 2 cut(s) | 1890, 2272 |
| StyI | CCWWGG | 1 cut(s) | 1756 |
| TaaI | ACNGT | 2 cut(s) | 184, 1423 |
| TaiI | ACGT | 8 cut(s) | 24, 193, 237, 928, 1160, 1306, 1693, 2288 |
| TaqII | GACCGA | 1 cut(s) | 536 |
| TatI | WGTACW | 4 cut(s) | 259, 1531, 1741, 2505 |
| TauI | GCSGC | 1 cut(s) | 2269 |
| TfiI | GAWTC | 5 cut(s) | 797, 1189, 1240, 1652, 2294 |
| TscAI | CASTG | 2 cut(s) | 91, 2532 |
| TseFI | GTSAC | 4 cut(s) | 82, 169, 955, 1377 |
| TseI | GCWGC | 4 cut(s) | 1148, 1896, 2174, 2177 |
| Tsp45I | GTSAC | 4 cut(s) | 82, 169, 955, 1377 |
| TspGWI | ACGGA | 1 cut(s) | 1622 |
| TspRI | CASTG | 2 cut(s) | 91, 2532 |
| Tth111I | GACNNNGTC | 1 cut(s) | 59 |
| VpaK11BI | GGWCC | 1 cut(s) | 736 |
| VspI | ATTAAT | 1 cut(s) | 911 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 56, 633 |
| XapI | RAATTY | 4 cut(s) | 813, 1518, 1806, 2222 |
| XceI | RCATGY | 2 cut(s) | 1515, 1640 |
| XhoI | CTCGAG | 1 cut(s) | 146 |
| XmnI | GAANNNNTTC | 3 cut(s) | 132, 261, 1806 |
| XspI | CTAG | 6 cut(s) | 14, 782, 1584, 1674, 2051, 2219 |
| ZraI | GACGTC | 1 cut(s) | 2286 |
| ZrmI | AGTACT | 1 cut(s) | 261 |