Rw1G013930

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001265
Physical Location & Seq
Forward (+)
31012994 .. 31015192
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013930.1

Sequence Viewer

Length: 1737 bp
ATGGAGGCACTCAGAAGCATTTTCACACTAGGCCTTTGCCTTCTCTTTGCTTCATCAGCAATGTCGACCTTGGCCGATCCCAAAGCTCACCACCATGAATTTGTTATCCAAGCAACACCAGTGAAGAGGCTGTGCAAAACCCACAACACCATCACAGTGAATGGACAGTTTCCTGGACCAACCTTGGAAGTAAACAATGGAGACACTCTTGTCGTCAAAGTCACTAACAAAGCTCGATACAACGTCACCATTCACTGGCATGGCATTCGGCAAATGAGAACTGGATGGGCGGATGGGCCCGAGTTTGTTACTCAATGTCCTATTAGACCAGGAGGGAGTTACACCTATCGGTTTACAGTTCAGGGTCAAGAAGGTACTCTGTGGTGGCACGCTCATAGCTCATGGCTTAGAGCCACCGTGTATGGAGCACTTATTATTCATCCGAAACAAGGAGACTCGTATCCATTCACTAAACCGAATCGTCAAGCAACACTTCTTCTTGGTGAGTGGTGGGATGGTAACCCTATTGACGTGGTGAAGAGGGCGACTCGCACAGGAGCAGCTCCAAATGTTTCTAACGCATATACTATTAACGGTCAACCCGGAGATCTTTACAGTTGCTCCAGCAAAGGCACCGTCATAGTTCCAATAGACTCTGGTGAGACCAACCTACTGAGACTGATAAACGCCGCCCTCAACCAACCTCTTTTCTTCTCCGTCGCCAACCATAAACTGACTGTGGTTGGTGCTGATGCCTCGTACACCAAGCCTTTCACCACCAAAGTTCTCATGCTAGGCCCAGGCCAGACTACTGATGTTTTAATCACCGGGGACCAGCCACCATCTCGATACTACTTGGCGGCGAGTGCCTATTTCAGTGCACAAAATGCTCCGTTTGACAACACCACCACCACAGCCATTCTTGAATACAAGTCCGTTCGTTGCAACGCTACTAGTTGCAACAAGGGTAAAACAGTAATTAAACCCATAATGCCAAAGCTGCCAGCTTTCAATGACACGAACACCGCATCTGCCTTCACTAAGAGCTTCAGAAGCCCTAGAAAAGTCGAAGTCCCAACTGAAATCGACGAGAGCCTCTTCTTCACAATCGGCCTCGGACTCAACAAATGCCCTAAGCACTTTCGATCTAGAAGGTGCCAAGGCCCCAATGGCACACGCTTCACTGCTAGCATGAACAATGTCTCATTTGTGCTTCCAAACAACATGTCAATTCTCCAAGCTTACCAGCAAAACATTCCTGGAGTTTACACTAGTGATTTTCCAGTCAACCCGCCATGGAAGTTTGATTACACTGGGAATGTGAGCCGCTCGCTTTGGCAACCCAGTTCTGGAACAAAGGCATACAAGTTGAAGTACGGGTCTAGGGTGCAGGTGGTGTTACAAGACACAAGTATTGTCACACCCGAGAACCATCCCATTCATCTCCACGGTTATGATTTCTACATCCTTGCAGAGGGTTTTGGAAATTTCAACCCCAAGACTGATACTAAAATGTTTAATCTTGTTGATCCACCTCTAAGGAACACGGTCGCGGTGCCCGTAAATGGTTGGGCAGTCATCAGATTTGTAGCTGACAATCCAGGTGCTTGGATGATGCATTGTCACTTGGATGTTCATATCAACTGGGGTTTGGCCATGGTTTTCTTGGTGGACAATGGAGTTGGGGAGCTGCAATCAATAGAGCCACCGCCAGCGGATTATCCTCTGTGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0042221 GO:0046688 GO:0050896 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

578

Amino Acids

63.91

Weight (kDa)

9.11

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 36 - 150 1.8e-45 Multicopper oxidase
Cu-oxidase PF00394 163 - 311 9.1e-41 Multicopper oxidase
Cu-oxidase_2 PF07731 426 - 559 8.5e-43 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1381
AasI GACNNNNNNGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 1381
AccB1I GGYRCC 3 cut(s) 632, 1155, 1555
AccB7I CCANNNNNTGG 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 1329
AccI GTMKAC 1 cut(s) 65
AccII CGCG 1 cut(s) 1553
AciI CCGC 9 cut(s) 290, 690, 860, 1026, 1292, 1327, 1553, 1709, 1715
AclWI GGATC 2 cut(s) 71, 1523
AcoI YGGCCR 2 cut(s) 72, 1653
AcsI RAATTY 2 cut(s) 98, 1486
AcuI CTGAAG 1 cut(s) 1033
AfaI GTAC 3 cut(s) 376, 761, 1376
AfiI CCNNNNNNNGG 5 cut(s) 255, 449, 1349, 1474, 1565
AflIII ACRYGT 1 cut(s) 1224
AgsI TTSAA 4 cut(s) 926, 1012, 1372, 1492
AhlI ACTAGT 2 cut(s) 953, 1271
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 5 cut(s) 172, 328, 799, 1258, 1600
Alw21I GWGCWC 2 cut(s) 430, 883
Alw26I GTCTC 5 cut(s) 195, 447, 656, 670, 1207
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 2 cut(s) 71, 1523
Ama87I CYCGRG 2 cut(s) 299, 1424
AoxI GGCC 8 cut(s) 31, 72, 296, 796, 802, 1111, 1162, 1653
ApaI GGGCCC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 3 cut(s) 560, 1000, 1690
ApoI RAATTY 2 cut(s) 98, 1486
ArsI GACNNNNNNTTYG 4 cut(s) 621, 653, 1211, 1243
AspS9I GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
AsuC2I CCSGG 2 cut(s) 603, 829
AsuHPI GGTGA 7 cut(s) 80, 238, 515, 547, 671, 766, 817
AsuNHI GCTAGC 1 cut(s) 1187
AvaI CYCGRG 2 cut(s) 299, 1424
AvaII GGWCC 2 cut(s) 176, 832
BaeGI GKGCMC 3 cut(s) 300, 883, 1560
BalI TGGCCA 1 cut(s) 1655
BanI GGYRCC 3 cut(s) 632, 1155, 1555
BanII GRGCYC 1 cut(s) 300
BarI GAAGNNNNNNTAC 2 cut(s) 1292, 1324
Bbv12I GWGCWC 2 cut(s) 430, 883
BbvI GCAGC 3 cut(s) 572, 987, 1677
BccI CCATC 6 cut(s) 158, 279, 287, 509, 850, 1440
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 5 cut(s) 174, 330, 801, 1260, 1602
BciVI GTATCC 1 cut(s) 471
BcnI CCSGG 2 cut(s) 603, 829
BcoDI GTCTC 5 cut(s) 195, 447, 656, 670, 1207
BcuI ACTAGT 2 cut(s) 953, 1271
BfaI CTAG 8 cut(s) 29, 794, 954, 1059, 1149, 1188, 1272, 1383
BfuAI ACCTGC 1 cut(s) 1381
BfuI GTATCC 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 1170
BglII AGATCT 1 cut(s) 607
BisI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
BlsI GCNGC 6 cut(s) 562, 691, 862, 1002, 1328, 1692
Bme1390I CCNGG 7 cut(s) 174, 330, 603, 801, 829, 1260, 1602
Bme18I GGWCC 2 cut(s) 176, 832
BmeT110I CYCGRG 2 cut(s) 299, 1424
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
BmiI GGNNCC 6 cut(s) 298, 634, 833, 1157, 1165, 1557
BmrFI CCNGG 7 cut(s) 174, 330, 603, 801, 829, 1260, 1602
BmrI ACTGGG 3 cut(s) 1323, 1338, 1654
BmsI GCATC 3 cut(s) 742, 1037, 1605
BmtI GCTAGC 1 cut(s) 1191
BmuI ACTGGG 3 cut(s) 1323, 1338, 1654
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 2 cut(s) 607, 1281
Bpu10I CCTNAGC 1 cut(s) 1134
BpuMI CCSGG 2 cut(s) 603, 829
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 9 cut(s) 69, 183, 799, 828, 1114, 1159, 1295, 1447, 1656
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 5 cut(s) 255, 449, 1349, 1474, 1565
Bse1I ACTGG 7 cut(s) 119, 260, 286, 1283, 1318, 1344, 1649
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 5 cut(s) 174, 330, 801, 1260, 1602
BseDI CCNNGG 9 cut(s) 69, 183, 799, 828, 1114, 1159, 1295, 1447, 1656
BseGI GGATG 8 cut(s) 290, 298, 439, 520, 1432, 1464, 1617, 1636
BseLI CCNNNNNNNGG 5 cut(s) 255, 449, 1349, 1474, 1565
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 25, 665
BseNI ACTGG 7 cut(s) 119, 260, 286, 1283, 1318, 1344, 1649
BseSI GKGCMC 3 cut(s) 300, 883, 1560
BseXI GCAGC 3 cut(s) 572, 987, 1677
BsgI GTGCAG 1 cut(s) 1409
Bsh1236I CGCG 1 cut(s) 1553
Bsh1285I CGRYCG 1 cut(s) 1551
BshFI GGCC 8 cut(s) 33, 74, 298, 798, 804, 1113, 1164, 1655
BshNI GGYRCC 3 cut(s) 632, 1155, 1555
BsiEI CGRYCG 1 cut(s) 1551
BsiHKAI GWGCWC 2 cut(s) 430, 883
BsiHKCI CYCGRG 2 cut(s) 299, 1424
BsiSI CCGG 2 cut(s) 603, 828
BslFI GGGAC 2 cut(s) 845, 1058
BslI CCNNNNNNNGG 5 cut(s) 255, 449, 1349, 1474, 1565
BsmAI GTCTC 5 cut(s) 195, 447, 656, 670, 1207
BsmFI GGGAC 2 cut(s) 845, 1058
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 8 cut(s) 33, 74, 298, 798, 804, 1113, 1164, 1655
Bso31I GGTCTC 1 cut(s) 656
BsoBI CYCGRG 2 cut(s) 299, 1424
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 4 cut(s) 300, 430, 883, 1560
Bsp143I GATC 4 cut(s) 76, 607, 1145, 1528
Bsp19I CCATGG 2 cut(s) 1295, 1656
BspACI CCGC 9 cut(s) 290, 690, 860, 1026, 1292, 1327, 1553, 1709, 1715
BspANI GGCC 8 cut(s) 33, 74, 298, 798, 804, 1113, 1164, 1655
BspCNI CTCAG 2 cut(s) 24, 666
BspFNI CGCG 1 cut(s) 1553
BspLI GGNNCC 6 cut(s) 298, 634, 833, 1157, 1165, 1557
BspMI ACCTGC 1 cut(s) 1381
BspOI GCTAGC 1 cut(s) 1191
BspPI GGATC 2 cut(s) 71, 1523
BspT107I GGYRCC 3 cut(s) 632, 1155, 1555
BspTNI GGTCTC 1 cut(s) 656
BsrBI CCGCTC 1 cut(s) 1329
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 7 cut(s) 119, 260, 286, 1283, 1318, 1344, 1649
BssECI CCNNGG 9 cut(s) 69, 183, 799, 828, 1114, 1159, 1295, 1447, 1656
BssMI GATC 4 cut(s) 76, 607, 1145, 1528
BssT1I CCWWGG 5 cut(s) 69, 183, 1159, 1295, 1656
Bst2UI CCWGG 5 cut(s) 174, 330, 801, 1260, 1602
Bst6I CTCTTC 3 cut(s) 119, 533, 1103
BstAPI GCANNNNNTGC 1 cut(s) 887
BstC8I GCNNGC 5 cut(s) 390, 1005, 1189, 1331, 1713
BstDEI CTNAG 6 cut(s) 11, 407, 674, 1041, 1134, 1538
BstDSI CCRYGG 3 cut(s) 1295, 1447, 1656
BstEII GGTNACC 1 cut(s) 518
BstENI CCTNNNNNAGG 1 cut(s) 1472
BstF5I GGATG 8 cut(s) 290, 298, 439, 520, 1432, 1464, 1617, 1636
BstFNI CGCG 1 cut(s) 1553
BstKTI GATC 4 cut(s) 79, 610, 1148, 1531
BstMAI GTCTC 5 cut(s) 195, 447, 656, 670, 1207
BstMBI GATC 4 cut(s) 76, 607, 1145, 1528
BstMCI CGRYCG 1 cut(s) 1551
BstMWI GCNNNNNNNGC 6 cut(s) 56, 866, 887, 1000, 1053, 1170
BstNI CCWGG 5 cut(s) 174, 330, 801, 1260, 1602
BstNSI RCATGY 1 cut(s) 1228
BstPI GGTNACC 1 cut(s) 518
BstSCI CCNGG 7 cut(s) 172, 328, 601, 799, 827, 1258, 1600
BstSLI GKGCMC 3 cut(s) 300, 883, 1560
BstUI CGCG 1 cut(s) 1553
BstV1I GCAGC 3 cut(s) 572, 987, 1677
BstX2I RGATCY 1 cut(s) 607
BstXI CCANNNNNNTGG 1 cut(s) 1608
BstYI RGATCY 1 cut(s) 607
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 8 cut(s) 33, 74, 298, 798, 804, 1113, 1164, 1655
BtgI CCRYGG 3 cut(s) 1295, 1447, 1656
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 8 cut(s) 290, 298, 439, 520, 1432, 1464, 1617, 1636
BtsI GCAGTG 1 cut(s) 1182
BtsIMutI CAGTG 6 cut(s) 126, 162, 253, 883, 1182, 1311
BveI ACCTGC 1 cut(s) 1381
Cac8I GCNNGC 5 cut(s) 390, 1005, 1189, 1331, 1713
Cfr13I GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
Csp6I GTAC 3 cut(s) 375, 760, 1375
CviAII CATG 8 cut(s) 95, 260, 402, 790, 1192, 1225, 1296, 1657
CviQI GTAC 3 cut(s) 375, 760, 1375
DdeI CTNAG 6 cut(s) 11, 407, 674, 1041, 1134, 1538
DpnI GATC 4 cut(s) 78, 609, 1147, 1530
DpnII GATC 4 cut(s) 76, 607, 1145, 1528
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 2 cut(s) 72, 1653
Eam1104I CTCTTC 3 cut(s) 119, 533, 1103
EarI CTCTTC 3 cut(s) 119, 533, 1103
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 5 cut(s) 69, 183, 1159, 1295, 1656
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 2 cut(s) 176, 832
Eco57I CTGAAG 1 cut(s) 1033
Eco88I CYCGRG 2 cut(s) 299, 1424
Eco91I GGTNACC 1 cut(s) 518
EcoNI CCTNNNNNAGG 1 cut(s) 1472
EcoO109I RGGNCCY 1 cut(s) 1163
EcoO65I GGTNACC 1 cut(s) 518
EcoRII CCWGG 5 cut(s) 172, 328, 799, 1258, 1600
EcoT14I CCWWGG 5 cut(s) 69, 183, 1159, 1295, 1656
EcoT22I ATGCAT 1 cut(s) 1620
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 5 cut(s) 69, 183, 1159, 1295, 1656
FaeI CATG 8 cut(s) 98, 263, 405, 793, 1195, 1228, 1299, 1660
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 2 cut(s) 845, 1058
FatI CATG 8 cut(s) 94, 259, 401, 789, 1191, 1224, 1295, 1656
FauI CCCGC 1 cut(s) 1299
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
FokI GGATG 8 cut(s) 297, 305, 426, 527, 1419, 1451, 1624, 1643
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
FspBI CTAG 8 cut(s) 29, 794, 954, 1059, 1149, 1188, 1272, 1383
GluI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
GsuI CTGGAG 2 cut(s) 607, 1281
HaeIII GGCC 8 cut(s) 33, 74, 298, 798, 804, 1113, 1164, 1655
HapII CCGG 2 cut(s) 603, 828
Hin1II CATG 8 cut(s) 98, 263, 405, 793, 1195, 1228, 1299, 1660
HincII GTYRAC 3 cut(s) 66, 599, 1288
HindII GTYRAC 3 cut(s) 66, 599, 1288
HindIII AAGCTT 1 cut(s) 1239
HinfI GANTC 5 cut(s) 455, 478, 547, 653, 1119
HpaII CCGG 2 cut(s) 603, 828
HphI GGTGA 7 cut(s) 80, 238, 515, 547, 671, 766, 817
Hpy166II GTNNAC 9 cut(s) 66, 193, 354, 599, 762, 881, 1267, 1288, 1672
Hpy188I TCNGA 5 cut(s) 14, 444, 1052, 1118, 1583
Hpy188III TCNNGA 5 cut(s) 368, 846, 923, 1149, 1350
Hpy8I GTNNAC 9 cut(s) 66, 193, 354, 599, 762, 881, 1267, 1288, 1672
Hpy99I CGWCG 2 cut(s) 722, 1091
HpyAV CCTTC 4 cut(s) 50, 365, 1045, 1146
HpyCH4IV ACGT 2 cut(s) 243, 531
HpyCH4V TGCA 8 cut(s) 135, 881, 945, 960, 1390, 1472, 1618, 1693
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 866, 887, 1000, 1053, 1170
HpyF3I CTNAG 6 cut(s) 11, 407, 674, 1041, 1134, 1538
HpySE526I ACGT 2 cut(s) 243, 531
Hsp92II CATG 8 cut(s) 98, 263, 405, 793, 1195, 1228, 1299, 1660
Kzo9I GATC 4 cut(s) 76, 607, 1145, 1528
LmnI GCTCC 6 cut(s) 425, 557, 568, 626, 895, 1687
Lsp1109I GCAGC 3 cut(s) 572, 987, 1677
LweI GCATC 3 cut(s) 742, 1037, 1605
MaeI CTAG 8 cut(s) 29, 794, 954, 1059, 1149, 1188, 1272, 1383
MaeII ACGT 2 cut(s) 243, 531
MaeIII GTNAC 8 cut(s) 220, 244, 307, 338, 518, 1398, 1417, 1622
MalI GATC 4 cut(s) 78, 609, 1147, 1530
MbiI CCGCTC 1 cut(s) 1329
MboI GATC 4 cut(s) 76, 607, 1145, 1528
MboII GAAGA 6 cut(s) 136, 488, 550, 703, 1090, 1093
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 4 cut(s) 300, 430, 883, 1560
MlsI TGGCCA 1 cut(s) 1655
MluCI AATT 4 cut(s) 98, 978, 1230, 1486
MluNI TGGCCA 1 cut(s) 1655
MlyI GAGTC 4 cut(s) 449, 541, 647, 1113
Mox20I TGGCCA 1 cut(s) 1655
Mph1103I ATGCAT 1 cut(s) 1620
MscI TGGCCA 1 cut(s) 1655
MseI TTAA 4 cut(s) 591, 821, 981, 1518
MslI CAYNNNNRTG 5 cut(s) 93, 155, 258, 1452, 1629
Msp20I TGGCCA 1 cut(s) 1655
MspA1I CMGCKG 1 cut(s) 1715
MspI CCGG 2 cut(s) 603, 828
MspR9I CCNGG 7 cut(s) 174, 330, 603, 801, 829, 1260, 1602
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 5 cut(s) 174, 330, 801, 1260, 1602
MvnI CGCG 1 cut(s) 1553
MwoI GCNNNNNNNGC 6 cut(s) 56, 866, 887, 1000, 1053, 1170
NciI CCSGG 2 cut(s) 603, 829
NcoI CCATGG 2 cut(s) 1295, 1656
NdeII GATC 4 cut(s) 76, 607, 1145, 1528
NheI GCTAGC 1 cut(s) 1187
NlaIII CATG 8 cut(s) 98, 263, 405, 793, 1195, 1228, 1299, 1660
NlaIV GGNNCC 6 cut(s) 298, 634, 833, 1157, 1165, 1557
NmuCI GTSAC 4 cut(s) 220, 244, 1417, 1622
NsiI ATGCAT 1 cut(s) 1620
NspI RCATGY 1 cut(s) 1228
PaqCI CACCTGC 1 cut(s) 1381
PceI AGGCCT 1 cut(s) 33
PciI ACATGT 1 cut(s) 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 1557
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 478
PflMI CCANNNNNTGG 1 cut(s) 255
PfoI TCCNGGA 2 cut(s) 172, 1258
PkrI GCNGC 6 cut(s) 562, 691, 862, 1002, 1328, 1692
PleI GAGTC 4 cut(s) 449, 541, 647, 1113
PpsI GAGTC 4 cut(s) 449, 541, 647, 1113
PscI ACATGT 1 cut(s) 1224
Psp6I CCWGG 5 cut(s) 172, 328, 799, 1258, 1600
PspEI GGTNACC 1 cut(s) 518
PspGI CCWGG 5 cut(s) 172, 328, 799, 1258, 1600
PspN4I GGNNCC 6 cut(s) 298, 634, 833, 1157, 1165, 1557
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 3 cut(s) 376, 761, 1376
RsaNI GTAC 3 cut(s) 375, 760, 1375
RseI CAYNNNNRTG 5 cut(s) 93, 155, 258, 1452, 1629
SalI GTCGAC 1 cut(s) 64
SaqAI TTAA 4 cut(s) 591, 821, 981, 1518
SatI GCNGC 6 cut(s) 561, 690, 861, 1001, 1327, 1691
Sau3AI GATC 4 cut(s) 76, 607, 1145, 1528
Sau96I GGNCC 6 cut(s) 176, 296, 297, 797, 832, 1163
SchI GAGTC 4 cut(s) 449, 541, 647, 1113
ScrFI CCNGG 7 cut(s) 174, 330, 603, 801, 829, 1260, 1602
SduI GDGCHC 4 cut(s) 300, 430, 883, 1560
SfaNI GCATC 3 cut(s) 742, 1037, 1605
SinI GGWCC 2 cut(s) 176, 832
SmiMI CAYNNNNRTG 5 cut(s) 93, 155, 258, 1452, 1629
SpeI ACTAGT 2 cut(s) 953, 1271
Sse9I AATT 4 cut(s) 98, 978, 1230, 1486
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 9 cut(s) 290, 690, 860, 1026, 1292, 1327, 1553, 1709, 1715
SspMI CTAG 8 cut(s) 29, 794, 954, 1059, 1149, 1188, 1272, 1383
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 7 cut(s) 172, 328, 601, 799, 827, 1258, 1600
StyI CCWWGG 5 cut(s) 69, 183, 1159, 1295, 1656
TaiI ACGT 2 cut(s) 246, 534
TaqI TCGA 6 cut(s) 65, 235, 847, 1068, 1086, 1144
TasI AATT 4 cut(s) 98, 978, 1230, 1486
TauI GCSGC 3 cut(s) 692, 863, 1329
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 4 cut(s) 591, 821, 981, 1518
Tru9I TTAA 4 cut(s) 591, 821, 981, 1518
TscAI CASTG 6 cut(s) 126, 162, 260, 883, 1189, 1318
TseFI GTSAC 4 cut(s) 220, 244, 1417, 1622
TseI GCWGC 3 cut(s) 560, 1000, 1690
Tsp45I GTSAC 4 cut(s) 220, 244, 1417, 1622
TspDTI ATGAA 6 cut(s) 42, 111, 428, 1208, 1430, 1625
TspGWI ACGGA 3 cut(s) 706, 882, 925
TspRI CASTG 6 cut(s) 126, 162, 260, 883, 1189, 1318
Van91I CCANNNNNTGG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 879
VpaK11BI GGWCC 2 cut(s) 176, 832
XagI CCTNNNNNAGG 1 cut(s) 1472
XapI RAATTY 2 cut(s) 98, 1486
XbaI TCTAGA 1 cut(s) 1148
XceI RCATGY 1 cut(s) 1228
XcmI CCANNNNNNNNNTGG 2 cut(s) 1166, 1663
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 8 cut(s) 29, 794, 954, 1059, 1149, 1188, 1272, 1383
Zsp2I ATGCAT 1 cut(s) 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.