Rmu_sc0000172.1_g000002

Gibberellin-regulated protein 14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000172.1
OG0001842
Physical Location & Seq
Reverse (-)
7528 .. 10171
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1533 bp
atggctttcaaagctgcgctcctgttacttgtcactagtcttttggtgacttcaacggtttctgatcacccattgaaatgggatattgaagacggagtgggtgcaattgtggggggcattactggtggcgcgttggtcgagattgatatagcaccactcttacgttttacttttctagccgccacctccaccccagaaaacaccgccaccggctccagtgaagtcaccatcaccggctccgacatcccgaggaaatgcaccggctccggcacctcaagcaaatgcaccggctccggcaccccaagcaaatgcaccggctcccccacctcgaaggagtacaccggctccggcacccagagcaaatgcaccagatcccccacccccaccccgacccccggtacccgctccacccccgacgacaacaaccctttgtttggcttgatccttctacctgccgctctcgctgcctctgctgctggcgctgctggcggccttggtggggctatcatatctagcttcgaagctgcagctacctctgcagctgccgttgcagctgcagatgttctccaagaaattttaaaacataagaaaaatgaaacacctcccggtaagcgtaattgcacgtgctcgtcaggtgggaaggaaccttctccagttaggacctcccccgctccaccatctccaatcaaaccttcgactccaccaactcaaggaaggtcaccaccttcgccacctctgaaaaggacaccaccatctctgccacctttaaaaaaggcaccaccaccaccaccggaggaagtagagggagagacaccagctccctcacctcaagatgacaacttattggctctatccccttttatagacgcaccctttccttcacctctggcaagtgcacccgctccttcacctcgggcaagcgcacccgctccttcacctctggcaaatgcacccgctcctattggaggcggtggcggtggtggatccaaatctaaagcaggaggcggagggactatccttggcggtgatattggaaaaaccatctcagacatgggtagtcataagacccgtgaaaatttaaacactaagggaacgccttatccacatcagtgtaggtgcccaaaatcttctaagacctcccccactccaccatctccaatcaaaccctcgactccaccagctcaaagaaggtcaccaccttcgtcacctctgaaaaaggcaccaccacctctcctagcttcaaaaaaggcaccagtaccagcacctccaccagctctagcacctcaagatgatgatgatgtggcaccagctcctgcacctcaagatgacaacactcctgttgcagattgcataacgttatgtgatcagaggtgtgcgtttcatcaaaataagaaagtgtgcacggatgtgtgcatgatttgttgtgaccgctgcaactgtgttccacctggaccttctaaccgcaacaaggaaacatgtggcctctgctacactcaagtacttatccaagaatacaagtacaattgcccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

510

Amino Acids

51.68

Weight (kDa)

8.67

Isoelectric Point (pI)

72.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 449 - 510 4.6e-13 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 460
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 9 cut(s) 269, 296, 350, 398, 775, 1116, 1219, 1249, 1303
AccBSI CCGCTC 6 cut(s) 405, 458, 671, 902, 929, 956
AccII CGCG 1 cut(s) 131
AclI AACGTT 1 cut(s) 1355
AclWI GGATC 4 cut(s) 366, 436, 978, 991
AcsI RAATTY 2 cut(s) 573, 1075
AcvI CACGTG 1 cut(s) 624
AfaI GTAC 5 cut(s) 338, 400, 1257, 1500, 1520
AfiI CCNNNNNNNGG 6 cut(s) 395, 434, 499, 710, 965, 1468
AflIII ACRYGT 1 cut(s) 1475
AgsI TTSAA 5 cut(s) 10, 54, 76, 89, 1242
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 1447
AjuI GAANNNNNNNTTGG 2 cut(s) 676, 708
AleI CACNNNNGTG 2 cut(s) 1108, 1406
AloI GAACNNNNNNTCC 2 cut(s) 1084, 1116
Alw21I GWGCWC 3 cut(s) 629, 898, 1403
Alw26I GTCTC 1 cut(s) 803
Alw44I GTGCAC 2 cut(s) 894, 1399
AlwI GGATC 4 cut(s) 366, 436, 978, 991
AlwNI CAGNNNCTG 1 cut(s) 1313
Ama87I CYCGRG 2 cut(s) 247, 912
AoxI GGCC 2 cut(s) 490, 1480
ApaLI GTGCAC 2 cut(s) 894, 1399
ApoI RAATTY 2 cut(s) 573, 1075
Asp718I GGTACC 1 cut(s) 398
AspLEI GCGC 4 cut(s) 19, 131, 482, 923
AspS9I GGNCC 2 cut(s) 660, 1451
AsuC2I CCSGG 2 cut(s) 396, 606
AsuII TTCGAA 1 cut(s) 519
AvaI CYCGRG 2 cut(s) 247, 912
AvaII GGWCC 2 cut(s) 660, 1451
BaeGI GKGCMC 3 cut(s) 898, 1121, 1403
BamHI GGATCC 1 cut(s) 983
BanI GGYRCC 9 cut(s) 269, 296, 350, 398, 775, 1116, 1219, 1249, 1303
BbrPI CACGTG 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 3 cut(s) 629, 898, 1403
BccI CCATC 5 cut(s) 236, 685, 760, 1049, 1159
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 1 cut(s) 1449
BclI TGATCA 2 cut(s) 64, 1363
BcnI CCSGG 2 cut(s) 396, 606
BcoDI GTCTC 1 cut(s) 803
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 5 cut(s) 36, 176, 513, 1235, 1277
BfmI CTRYAG 3 cut(s) 525, 537, 555
BfoI RGCGCY 1 cut(s) 483
BfuAI ACCTGC 1 cut(s) 460
BmcAI AGTACT 1 cut(s) 1500
Bme1390I CCNGG 3 cut(s) 396, 606, 1449
Bme18I GGWCC 2 cut(s) 660, 1451
BmeT110I CYCGRG 2 cut(s) 247, 912
BmgT120I GGNCC 2 cut(s) 660, 1451
BmrFI CCNGG 3 cut(s) 396, 606, 1449
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 2 cut(s) 199, 636
Bpu14I TTCGAA 1 cut(s) 519
BpuEI CTTGAG 6 cut(s) 259, 693, 813, 1269, 1305, 1479
BpuMI CCSGG 2 cut(s) 396, 606
BsaAI YACGTR 1 cut(s) 624
BsaBI GATNNNNATC 1 cut(s) 988
BsaJI CCNNGG 5 cut(s) 248, 394, 493, 911, 1018
BsaWI WCCGGW 1 cut(s) 790
BsaXI ACNNNNNCTCC 6 cut(s) 329, 359, 802, 832, 1215, 1245
Bsc4I CCNNNNNNNGG 6 cut(s) 395, 434, 499, 710, 965, 1468
Bse118I RCCGGY 6 cut(s) 209, 233, 260, 287, 314, 341
Bse1I ACTGG 4 cut(s) 127, 216, 653, 1253
Bse8I GATNNNNATC 1 cut(s) 988
BseBI CCWGG 1 cut(s) 1449
BseDI CCNNGG 5 cut(s) 248, 394, 493, 911, 1018
BseGI GGATG 2 cut(s) 243, 1411
BseJI GATNNNNATC 1 cut(s) 988
BseLI CCNNNNNNNGG 6 cut(s) 395, 434, 499, 710, 965, 1468
BseMII CTCAG 1 cut(s) 1059
BseNI ACTGG 4 cut(s) 127, 216, 653, 1253
BseSI GKGCMC 3 cut(s) 898, 1121, 1403
BsgI GTGCAG 1 cut(s) 1299
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 492, 1482
BshNI GGYRCC 9 cut(s) 269, 296, 350, 398, 775, 1116, 1219, 1249, 1303
BsiHKAI GWGCWC 3 cut(s) 629, 898, 1403
BsiHKCI CYCGRG 2 cut(s) 247, 912
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 6 cut(s) 395, 434, 499, 710, 965, 1468
BsmAI GTCTC 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 1024
BsnI GGCC 2 cut(s) 492, 1482
BsoBI CYCGRG 2 cut(s) 247, 912
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 4 cut(s) 629, 898, 1121, 1403
Bsp143I GATC 5 cut(s) 64, 371, 441, 983, 1363
BspANI GGCC 2 cut(s) 492, 1482
BspCNI CTCAG 1 cut(s) 1058
BspFNI CGCG 1 cut(s) 131
BspMAI CTGCAG 3 cut(s) 529, 541, 559
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 4 cut(s) 366, 436, 978, 991
BspT104I TTCGAA 1 cut(s) 519
BspT107I GGYRCC 9 cut(s) 269, 296, 350, 398, 775, 1116, 1219, 1249, 1303
BsrBI CCGCTC 6 cut(s) 405, 458, 671, 902, 929, 956
BsrFI RCCGGY 6 cut(s) 209, 233, 260, 287, 314, 341
BsrI ACTGG 4 cut(s) 127, 216, 653, 1253
BssAI RCCGGY 6 cut(s) 209, 233, 260, 287, 314, 341
BssECI CCNNGG 5 cut(s) 248, 394, 493, 911, 1018
BssMI GATC 5 cut(s) 64, 371, 441, 983, 1363
BssT1I CCWWGG 2 cut(s) 493, 1018
Bst2UI CCWGG 1 cut(s) 1449
Bst4CI ACNGT 2 cut(s) 58, 1439
BstBAI YACGTR 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 3 cut(s) 478, 487, 919
BstDEI CTNAG 3 cut(s) 1045, 1086, 1131
BstEII GGTNACC 2 cut(s) 717, 1191
BstENI CCTNNNNNAGG 1 cut(s) 963
BstF5I GGATG 2 cut(s) 243, 1411
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 4 cut(s) 19, 131, 482, 923
BstKTI GATC 5 cut(s) 67, 374, 444, 986, 1366
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 5 cut(s) 64, 371, 441, 983, 1363
BstNI CCWGG 1 cut(s) 1449
BstNSI RCATGY 1 cut(s) 1479
BstPI GGTNACC 2 cut(s) 717, 1191
BstSCI CCNGG 3 cut(s) 394, 604, 1447
BstSFI CTRYAG 3 cut(s) 525, 537, 555
BstSLI GKGCMC 3 cut(s) 898, 1121, 1403
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 371, 983
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 2 cut(s) 371, 983
BsuRI GGCC 2 cut(s) 492, 1482
BtsCI GGATG 2 cut(s) 243, 1411
BtsIMutI CAGTG 2 cut(s) 223, 1115
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 3 cut(s) 478, 487, 919
CaiI CAGNNNCTG 1 cut(s) 1313
CfoI GCGC 4 cut(s) 19, 131, 482, 923
Cfr10I RCCGGY 6 cut(s) 209, 233, 260, 287, 314, 341
Cfr13I GGNCC 2 cut(s) 660, 1451
CseI GACGC 1 cut(s) 875
Csp6I GTAC 5 cut(s) 337, 399, 1256, 1499, 1519
CviAII CATG 3 cut(s) 1051, 1414, 1476
CviQI GTAC 5 cut(s) 337, 399, 1256, 1499, 1519
DdeI CTNAG 3 cut(s) 1045, 1086, 1131
DpnI GATC 5 cut(s) 66, 373, 443, 985, 1365
DpnII GATC 5 cut(s) 64, 371, 441, 983, 1363
DraI TTTAAA 3 cut(s) 579, 768, 1080
EciI GGCGGA 1 cut(s) 1020
Eco130I CCWWGG 2 cut(s) 493, 1018
Eco47I GGWCC 2 cut(s) 660, 1451
Eco72I CACGTG 1 cut(s) 624
Eco88I CYCGRG 2 cut(s) 247, 912
Eco91I GGTNACC 2 cut(s) 717, 1191
EcoNI CCTNNNNNAGG 1 cut(s) 963
EcoO109I RGGNCCY 1 cut(s) 660
EcoO65I GGTNACC 2 cut(s) 717, 1191
EcoRII CCWGG 1 cut(s) 1447
EcoT14I CCWWGG 2 cut(s) 493, 1018
ErhI CCWWGG 2 cut(s) 493, 1018
FaeI CATG 3 cut(s) 1054, 1417, 1479
FaqI GGGAC 1 cut(s) 1024
FatI CATG 3 cut(s) 1050, 1413, 1475
FauI CCCGC 5 cut(s) 410, 676, 907, 934, 961
FbaI TGATCA 2 cut(s) 64, 1363
FokI GGATG 2 cut(s) 230, 1418
FspBI CTAG 5 cut(s) 36, 176, 513, 1235, 1277
GlaI GCGC 4 cut(s) 18, 130, 481, 922
GsuI CTGGAG 2 cut(s) 199, 636
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 2 cut(s) 492, 1482
HgaI GACGC 1 cut(s) 875
HhaI GCGC 4 cut(s) 19, 131, 482, 923
Hin1II CATG 3 cut(s) 1054, 1417, 1479
Hin6I GCGC 4 cut(s) 17, 129, 480, 921
HinP1I GCGC 4 cut(s) 17, 129, 480, 921
HinfI GANTC 2 cut(s) 697, 1171
Hpy166II GTNNAC 3 cut(s) 339, 896, 1401
Hpy188I TCNGA 6 cut(s) 64, 241, 738, 1048, 1212, 1368
Hpy188III TCNNGA 5 cut(s) 139, 247, 830, 1286, 1322
Hpy8I GTNNAC 3 cut(s) 339, 896, 1401
Hpy99I CGWCG 1 cut(s) 419
HpyCH4III ACNGT 2 cut(s) 58, 1439
HpyCH4IV ACGT 3 cut(s) 163, 623, 1355
HpyF3I CTNAG 3 cut(s) 1045, 1086, 1131
HpySE526I ACGT 3 cut(s) 163, 623, 1355
Hsp92II CATG 3 cut(s) 1054, 1417, 1479
HspAI GCGC 4 cut(s) 17, 129, 480, 921
KpnI GGTACC 1 cut(s) 402
Ksp22I TGATCA 2 cut(s) 64, 1363
Kzo9I GATC 5 cut(s) 64, 371, 441, 983, 1363
MaeI CTAG 5 cut(s) 36, 176, 513, 1235, 1277
MaeII ACGT 3 cut(s) 163, 623, 1355
MaeIII GTNAC 8 cut(s) 24, 31, 46, 223, 717, 1191, 1203, 1424
MalI GATC 5 cut(s) 66, 373, 443, 985, 1365
MbiI CCGCTC 6 cut(s) 405, 458, 671, 902, 929, 956
MboI GATC 5 cut(s) 64, 371, 441, 983, 1363
MboII GAAGA 2 cut(s) 101, 1119
MfeI CAATTG 2 cut(s) 105, 1522
MflI RGATCY 2 cut(s) 371, 983
MhlI GDGCHC 4 cut(s) 629, 898, 1121, 1403
MluCI AATT 5 cut(s) 105, 573, 616, 1075, 1522
MlyI GAGTC 2 cut(s) 691, 1165
MmeI TCCRAC 1 cut(s) 264
MseI TTAA 4 cut(s) 578, 767, 1079, 1531
MslI CAYNNNNRTG 3 cut(s) 76, 1108, 1406
MspA1I CMGCKG 3 cut(s) 542, 554, 1431
MspR9I CCNGG 3 cut(s) 396, 606, 1449
MunI CAATTG 2 cut(s) 105, 1522
MvaI CCWGG 1 cut(s) 1449
MvnI CGCG 1 cut(s) 131
NciI CCSGG 2 cut(s) 396, 606
NdeII GATC 5 cut(s) 64, 371, 441, 983, 1363
NlaIII CATG 3 cut(s) 1054, 1417, 1479
NmuCI GTSAC 7 cut(s) 31, 46, 223, 717, 1191, 1203, 1424
NspI RCATGY 1 cut(s) 1479
NspV TTCGAA 1 cut(s) 519
OliI CACNNNNGTG 2 cut(s) 1108, 1406
PciI ACATGT 1 cut(s) 1475
PleI GAGTC 2 cut(s) 691, 1165
PmaCI CACGTG 1 cut(s) 624
PmlI CACGTG 1 cut(s) 624
PpsI GAGTC 2 cut(s) 691, 1165
Ppu21I YACGTR 1 cut(s) 624
PpuMI RGGWCCY 1 cut(s) 660
PscI ACATGT 1 cut(s) 1475
Psp1406I AACGTT 1 cut(s) 1355
Psp5II RGGWCCY 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 1447
PspCI CACGTG 1 cut(s) 624
PspEI GGTNACC 2 cut(s) 717, 1191
PspGI CCWGG 1 cut(s) 1447
PspPI GGNCC 2 cut(s) 660, 1451
PspPPI RGGWCCY 1 cut(s) 660
PstI CTGCAG 3 cut(s) 529, 541, 559
PstNI CAGNNNCTG 1 cut(s) 1313
PsuI RGATCY 2 cut(s) 371, 983
PvuII CAGCTG 2 cut(s) 542, 554
RsaI GTAC 5 cut(s) 338, 400, 1257, 1500, 1520
RsaNI GTAC 5 cut(s) 337, 399, 1256, 1499, 1519
RseI CAYNNNNRTG 3 cut(s) 76, 1108, 1406
SaqAI TTAA 4 cut(s) 578, 767, 1079, 1531
Sau3AI GATC 5 cut(s) 64, 371, 441, 983, 1363
Sau96I GGNCC 2 cut(s) 660, 1451
ScaI AGTACT 1 cut(s) 1500
SchI GAGTC 2 cut(s) 691, 1165
ScrFI CCNGG 3 cut(s) 396, 606, 1449
SduI GDGCHC 4 cut(s) 629, 898, 1121, 1403
SfcI CTRYAG 3 cut(s) 525, 537, 555
SfuI TTCGAA 1 cut(s) 519
SinI GGWCC 2 cut(s) 660, 1451
SmiMI CAYNNNNRTG 3 cut(s) 76, 1108, 1406
SmlI CTYRAG 6 cut(s) 274, 708, 828, 1284, 1320, 1494
SmoI CTYRAG 6 cut(s) 274, 708, 828, 1284, 1320, 1494
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 5 cut(s) 105, 573, 616, 1075, 1522
SspMI CTAG 5 cut(s) 36, 176, 513, 1235, 1277
StyD4I CCNGG 3 cut(s) 394, 604, 1447
StyI CCWWGG 2 cut(s) 493, 1018
TaaI ACNGT 2 cut(s) 58, 1439
TaiI ACGT 3 cut(s) 166, 626, 1358
TaqI TCGA 5 cut(s) 138, 329, 519, 695, 1169
TasI AATT 5 cut(s) 105, 573, 616, 1075, 1522
TatI WGTACW 3 cut(s) 336, 1498, 1518
TauI GCSGC 3 cut(s) 182, 458, 492
Tru1I TTAA 4 cut(s) 578, 767, 1079, 1531
Tru9I TTAA 4 cut(s) 578, 767, 1079, 1531
TscAI CASTG 2 cut(s) 223, 1115
TseFI GTSAC 7 cut(s) 31, 46, 223, 717, 1191, 1203, 1424
Tsp45I GTSAC 7 cut(s) 31, 46, 223, 717, 1191, 1203, 1424
TspDTI ATGAA 2 cut(s) 609, 1370
TspGWI ACGGA 2 cut(s) 108, 1418
TspRI CASTG 2 cut(s) 223, 1115
VneI GTGCAC 2 cut(s) 894, 1399
VpaK11BI GGWCC 2 cut(s) 660, 1451
XagI CCTNNNNNAGG 1 cut(s) 963
XapI RAATTY 2 cut(s) 573, 1075
XceI RCATGY 1 cut(s) 1479
XcmI CCANNNNNNNNNTGG 1 cut(s) 1048
XspI CTAG 5 cut(s) 36, 176, 513, 1235, 1277
ZrmI AGTACT 1 cut(s) 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.