Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000255.1

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Reverse (-)

54004 .. 63358

Gene Structure 9355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3180 bp

atggggagcttcttaccattgcatcgtcagtgggcttgcagcggtggatatgcacaccatggctctagagctaattggcttataagatcacaaggggtacggtgcacgataaacaaccgattgatggacatgccaaaggacaatccaggtggagttgatcagaaggaccttgagtctcagcaaacactgtcaacagagcttgaactggtgcccattgatcctaaccgccgctggcgcacgattgtgctgatccttcaggcacgccatatcttcatcaccttagcagctgctaaaaaccctaaacttggatctctcacaggggacttggaagtaactataacccctaatcccacaccacctgaaggggttaccgtcaatgtaaattccgacaaccccaatgacagtgaatatcagctccagtttgctaccatttccaacatcataaagacaaaggatgttaaatccttacgtgactttggaggtgccaaagcattttcagaggctctcggtagtgatttggagactgggatccccaccaacgatgaagctacttgttgtcggctcaaatccaccacaaattccactggttctggacaggctgcttcaataggcttcattcagctagccaaaaaatattgcaacagttacatgattctgttgcttttcgcggctgctgtgctctcactttgctttggaatcgtggaggaaggcccgacgactggttggtttgaaggggtcatcatacttgatgccattatcatgctcgtggttcttccttccatacgtgattattggtgggaatctaaagggttgtccgggaggcaaaaactgttggagaacacagagcaagtggaggttgaggttttaagaggcggaaatgaggagaagatctccttatcagatgttttgtttggtgacatcgtgtgcttgaagagagggaatcaggttcctgctgatggtttattcatatcaggcggtttcagagtcttggatgatgagttagggtccgtggtagttgattccgataacccttttctcttctatggagcggaagtgatggatggcaatggtcgcatgctggtgacatctgtgggtgtaaacacagtgtggggtgacatgatgagcagcgtacaccatatgaagaagacatcattagaagctcaacttgacagggtgaacacttgtatacagatcattggtctcctaatctctatcctgatccttatggtgttgttcttgcgttttgaactcgaaaaagaacagcacaccggaggatccatggatccaaagggagagccaactaagatgaacatgtttatggctgccatccagaaaattgtcacgaaaccaagcggaaagatcagtatcttgacaacttcccttgcgttgatgctggttgggatagtagaagggttacctttctgtatcaaccttgccatcatttactggaacaggaaagctttgaatgggatggcctctcttcaacacctgttggcttgtgtcaccatggcttctgttacatctatctgcacagacaaaaacggtgggctaacattggattcaatggaagttgacatgtgctggattggcgaacaagttatggctgaaaattctgttatagcctcaaatgtcctcgaagcttttcgtgatggaatcagcatgctccttctctcgcaatctcctccttatacctcaatagaagaccctgtcatttcctgggcggcactcaagttgggcatggaattggaaattgtgaggcagagtaataccattgtcgaggacaaagaattgaccactgatcaggaaggaagaggagcaatgatgcggaagaacagagacagtgaaagagaaagaatgtacttgcattgcagaggacctgctacaagtattttgcccatttgttcacactaccatgactgtgaagggaagatcaacgtcatcgaagaacgaaacagggtgacttttcatagaaatgtcgaggatatgcagtccaagcatcttaaaaccatggcatttgcgtacaaggaaattgatgtcccaacaatggaagaaagagatctgatattgctgggactggttggtctgaagtcatgtttggaaaagatgagggaatcaatcagagccataagaaacgctggagtcaatatcatactggtttccggagatgatgtgcagacactagtgagcatagctgagcatttcagaattcagggggtgccgatttcaaatgaaatggtgaccacaggtgaaaagttcaggaattgcagagaagaagacaggatgaagatggtaagtgaaatttcagtgatgggaaactcactcccctccgacaagcttcttctggttaagtgtttgaagcaaaaaggggaaacagtagcagtcattggagttaaaacgaatgaggctcctgcactgaaagaagctgatgttggacttacaatgggaatatggaccaccaaaatggctaaagcgagttcagacatcatcgtaagggttgcagatatcagttgcctggtaagtatcctcaggcatggaagatgtgcttattacaacattcaaaagtacatccaacttgagcttactatagtagccgcagggcttttagtaacatttatcatagcagcatctacaggaaatatgcccataacaagtatccaattgttctgggtaaatttggtagtgccaatgctgggcggcctggctcttttgacagagctcccaagaaagaagttaatggagaaatcacaatctggacaaaccaaagcaattattaccatggccatgtgcagaaatataataatccaagcttcatatcaagctgttattatagtcaccttccatttcaaaggacaagcaatcttgggtgttgatgaaaaggttcgcaagactatcatcttcaatagttttgtcatctgccagatttttaacaagttcagtgcgagagagctggtaaagaaaaatgtgtttaaggcgatccacaagaaccaatggttttgggtggctttggctgcaatcctagtgctacagctgagttttattgagatttcacatgtggttgctggcgatgcaaggctgagcttggtacactggggtttctgccttcttattgggattgtttcgctagggatggatatagctgcaaagggcatctatgattacatgtcatctttcgtcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

1059

Amino Acids

116.97

Weight (kDa)

6.31

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	282 - 377	6.2e-10	P-type ATPase actuator domain
Cation_ATPase	PF13246	575 - 696	3.3e-10	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	688 - 809	7.5e-06	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	880 - 1048	1.3e-32	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AasI	GACNNNNNNGTC	1 cut(s)	2079
Acc36I	ACCTGC	1 cut(s)	1885
AccB1I	GGYRCC	3 cut(s)	208, 482, 2215
AccBSI	CCGCTC	1 cut(s)	1049
AccI	GTMKAC	1 cut(s)	1186
AccII	CGCG	1 cut(s)	668
AccIII	TCCGGA	1 cut(s)	2159
AcoI	YGGCCR	1 cut(s)	2778
AcsI	RAATTY	6 cut(s)	382, 577, 1609, 2205, 2298, 2671
AcuI	CTGAAG	3 cut(s)	239, 381, 2105
AdeI	CACNNNGTG	1 cut(s)	1107
AfaI	GTAC	6 cut(s)	99, 1131, 1859, 2021, 2564, 3084
AfiI	CCNNNNNNNGG	7 cut(s)	124, 305, 362, 719, 956, 2044, 2690
AflIII	ACRYGT	4 cut(s)	1311, 1575, 3049, 3159
AhdI	GACNNNNNGTC	1 cut(s)	172
AhlI	ACTAGT	1 cut(s)	2179
AjnI	CCWGG	4 cut(s)	145, 1715, 2511, 2697
AjuI	GAANNNNNNNTTGG	4 cut(s)	2078, 2110, 2412, 2444
AleI	CACNNNNGTG	1 cut(s)	242
Alw21I	GWGCWC	3 cut(s)	107, 681, 2718
Alw26I	GTCTC	4 cut(s)	180, 515, 1205, 1830
Alw44I	GTGCAC	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	2159
AoxI	GGCC	4 cut(s)	709, 1473, 2695, 2778
ApaLI	GTGCAC	1 cut(s)	103
ApoI	RAATTY	6 cut(s)	382, 577, 1609, 2205, 2298, 2671
Asp700I	GAANNNNTTC	2 cut(s)	1641, 2877
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	5 cut(s)	166, 710, 1005, 1874, 2451
AsuC2I	CCSGG	1 cut(s)	817
AsuNHI	GCTAGC	1 cut(s)	622
AvaII	GGWCC	4 cut(s)	166, 1005, 1874, 2451
AxyI	CCTNAGG	1 cut(s)	2525
BaeGI	GKGCMC	2 cut(s)	107, 213
BalI	TGGCCA	1 cut(s)	2780
BamHI	GGATCC	3 cut(s)	528, 1274, 1282
BanI	GGYRCC	3 cut(s)	208, 482, 2215
BanII	GRGCYC	1 cut(s)	2718
BauI	CACGAG	1 cut(s)	764
BbsI	GAAGAC	3 cut(s)	1151, 1707, 2280
Bbv12I	GWGCWC	3 cut(s)	107, 681, 2718
BciT130I	CCWGG	4 cut(s)	147, 1717, 2513, 2699
BciVI	GTATCC	2 cut(s)	2531, 2663
BclI	TGATCA	2 cut(s)	157, 1798
BcnI	CCSGG	1 cut(s)	817
BcoDI	GTCTC	4 cut(s)	180, 515, 1205, 1830
BcuI	ACTAGT	1 cut(s)	2179
BfaI	CTAG	5 cut(s)	66, 623, 2180, 3017, 3122
BfmI	CTRYAG	3 cut(s)	2583, 2628, 3023
BfuAI	ACCTGC	1 cut(s)	1885
BfuI	GTATCC	2 cut(s)	2531, 2663
BglII	AGATCT	2 cut(s)	888, 2056
BlpI	GCTNAGC	2 cut(s)	2193, 3074
Bme1390I	CCNGG	5 cut(s)	147, 817, 1717, 2513, 2699
Bme18I	GGWCC	4 cut(s)	166, 1005, 1874, 2451
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	166, 710, 1005, 1874, 2451
BmiI	GGNNCC	9 cut(s)	210, 484, 530, 948, 1006, 1276, 1284, 2217, 2406
BmrFI	CCNGG	5 cut(s)	147, 817, 1717, 2513, 2699
BmrI	ACTGGG	2 cut(s)	534, 3097
BmsI	GCATC	8 cut(s)	31, 739, 1380, 1812, 2005, 2633, 3055, 3156
BmtI	GCTAGC	1 cut(s)	626
BmuI	ACTGGG	2 cut(s)	534, 3097
BpiI	GAAGAC	3 cut(s)	1151, 1707, 2280
BplI	GAGNNNNNCTC	2 cut(s)	875, 907
BpmI	CTGGAG	2 cut(s)	401, 2157
Bpu10I	CCTNAGC	1 cut(s)	280
Bpu1102I	GCTNAGC	2 cut(s)	2193, 3074
BpuEI	CTTGAG	3 cut(s)	191, 1712, 2594
BpuMI	CCSGG	1 cut(s)	817
BsaAI	YACGTR	2 cut(s)	470, 785
BsaBI	GATNNNNATC	1 cut(s)	1364
BsaI	GGTCTC	1 cut(s)	1205
BsaJI	CCNNGG	7 cut(s)	58, 1008, 1278, 1506, 1716, 2007, 2775
BsaWI	WCCGGW	2 cut(s)	1268, 2159
BsaXI	ACNNNNNCTCC	4 cut(s)	1038, 1068, 2154, 2184
Bsc4I	CCNNNNNNNGG	7 cut(s)	124, 305, 362, 719, 956, 2044, 2690
Bse1I	ACTGG	9 cut(s)	210, 418, 529, 589, 724, 1451, 2079, 2157, 3092
Bse21I	CCTNAGG	1 cut(s)	2525
Bse3DI	GCAATG	4 cut(s)	17, 1072, 1824, 1864
Bse8I	GATNNNNATC	1 cut(s)	1364
BseAI	TCCGGA	1 cut(s)	2159
BseBI	CCWGG	4 cut(s)	147, 1717, 2513, 2699
BseDI	CCNNGG	7 cut(s)	58, 1008, 1278, 1506, 1716, 2007, 2775
BseGI	GGATG	8 cut(s)	460, 997, 1066, 1326, 1476, 2286, 2565, 3132
BseJI	GATNNNNATC	1 cut(s)	1364
BseLI	CCNNNNNNNGG	7 cut(s)	124, 305, 362, 719, 956, 2044, 2690
BseMI	GCAATG	4 cut(s)	17, 1072, 1824, 1864
BseMII	CTCAG	5 cut(s)	191, 2184, 2539, 3020, 3065
BseNI	ACTGG	9 cut(s)	210, 418, 529, 589, 724, 1451, 2079, 2157, 3092
BseRI	GAGGAG	3 cut(s)	896, 1671, 1827
BseSI	GKGCMC	2 cut(s)	107, 213
BseYI	CCCAGC	2 cut(s)	2068, 2689
BsgI	GTGCAG	4 cut(s)	1513, 2192, 2394, 2806
Bsh1236I	CGCG	1 cut(s)	668
BshFI	GGCC	4 cut(s)	711, 1475, 2697, 2780
BshNI	GGYRCC	3 cut(s)	208, 482, 2215
BsiHKAI	GWGCWC	3 cut(s)	107, 681, 2718
BsiSI	CCGG	3 cut(s)	816, 1269, 2160
BslFI	GGGAC	3 cut(s)	335, 2021, 2085
BslI	CCNNNNNNNGG	7 cut(s)	124, 305, 362, 719, 956, 2044, 2690
BsmAI	GTCTC	4 cut(s)	180, 515, 1205, 1830
BsmFI	GGGAC	3 cut(s)	335, 2021, 2085
BsnI	GGCC	4 cut(s)	711, 1475, 2697, 2780
Bso31I	GGTCTC	1 cut(s)	1205
Bsp1286I	GDGCHC	4 cut(s)	107, 213, 681, 2718
Bsp13I	TCCGGA	1 cut(s)	2159
Bsp1720I	GCTNAGC	2 cut(s)	2193, 3074
Bsp19I	CCATGG	5 cut(s)	58, 1278, 1506, 2007, 2775
BspANI	GGCC	4 cut(s)	711, 1475, 2697, 2780
BspCNI	CTCAG	5 cut(s)	190, 2185, 2538, 3021, 3066
BspEI	TCCGGA	1 cut(s)	2159
BspFNI	CGCG	1 cut(s)	668
BspLI	GGNNCC	9 cut(s)	210, 484, 530, 948, 1006, 1276, 1284, 2217, 2406
BspMI	ACCTGC	1 cut(s)	1885
BspOI	GCTAGC	1 cut(s)	626
BspT107I	GGYRCC	3 cut(s)	208, 482, 2215
BspTNI	GGTCTC	1 cut(s)	1205
BsrBI	CCGCTC	1 cut(s)	1049
BsrDI	GCAATG	4 cut(s)	17, 1072, 1824, 1864
BsrI	ACTGG	9 cut(s)	210, 418, 529, 589, 724, 1451, 2079, 2157, 3092
BssECI	CCNNGG	7 cut(s)	58, 1008, 1278, 1506, 1716, 2007, 2775
BssNAI	GTATAC	1 cut(s)	1187
BssSI	CACGAG	1 cut(s)	764
BssT1I	CCWWGG	5 cut(s)	58, 1278, 1506, 2007, 2775
Bst1107I	GTATAC	1 cut(s)	1187
Bst2BI	CACGAG	1 cut(s)	764
Bst2UI	CCWGG	4 cut(s)	147, 1717, 2513, 2699
Bst6I	CTCTTC	4 cut(s)	926, 1043, 1485, 1804
BstBAI	YACGTR	2 cut(s)	470, 785
BstC8I	GCNNGC	7 cut(s)	37, 233, 262, 624, 1076, 1661, 3061
BstDEI	CTNAG	7 cut(s)	177, 280, 1302, 2193, 2525, 3029, 3074
BstDSI	CCRYGG	6 cut(s)	58, 1008, 1278, 1506, 2007, 2775
BstEII	GGTNACC	3 cut(s)	367, 1413, 2236
BstF5I	GGATG	8 cut(s)	460, 997, 1066, 1326, 1476, 2286, 2565, 3132
BstFNI	CGCG	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	237
BstMAI	GTCTC	4 cut(s)	180, 515, 1205, 1830
BstMWI	GCNNNNNNNGC	6 cut(s)	234, 1071, 1587, 1993, 3008, 3065
BstNI	CCWGG	4 cut(s)	147, 1717, 2513, 2699
BstNSI	RCATGY	7 cut(s)	133, 1078, 1315, 1579, 1663, 3053, 3163
BstPI	GGTNACC	3 cut(s)	367, 1413, 2236
BstSCI	CCNGG	5 cut(s)	145, 815, 1715, 2511, 2697
BstSFI	CTRYAG	3 cut(s)	2583, 2628, 3023
BstSLI	GKGCMC	2 cut(s)	107, 213
BstUI	CGCG	1 cut(s)	668
BstV2I	GAAGAC	3 cut(s)	1151, 1707, 2280
BstX2I	RGATCY	6 cut(s)	308, 528, 888, 1274, 1282, 2056
BstXI	CCANNNNNNTGG	1 cut(s)	2461
BstYI	RGATCY	6 cut(s)	308, 528, 888, 1274, 1282, 2056
BstZ17I	GTATAC	1 cut(s)	1187
Bsu36I	CCTNAGG	1 cut(s)	2525
BsuI	GTATCC	2 cut(s)	2531, 2663
BsuRI	GGCC	4 cut(s)	711, 1475, 2697, 2780
BtgI	CCRYGG	6 cut(s)	58, 1008, 1278, 1506, 2007, 2775
BtgZI	GCGATG	1 cut(s)	3078
BtsCI	GGATG	8 cut(s)	460, 997, 1066, 1326, 1476, 2286, 2565, 3132
BveI	ACCTGC	1 cut(s)	1885
Cac8I	GCNNGC	7 cut(s)	37, 233, 262, 624, 1076, 1661, 3061
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	5 cut(s)	166, 710, 1005, 1874, 2451
Csp6I	GTAC	6 cut(s)	98, 1130, 1858, 2020, 2563, 3083
CspCI	CAANNNNNGTGG	4 cut(s)	130, 165, 1525, 1560
CviQI	GTAC	6 cut(s)	98, 1130, 1858, 2020, 2563, 3083
DdeI	CTNAG	7 cut(s)	177, 280, 1302, 2193, 2525, 3029, 3074
DraIII	CACNNNGTG	1 cut(s)	1107
DrdI	GACNNNNNNGTC	1 cut(s)	2079
DriI	GACNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	2079
EaeI	YGGCCR	1 cut(s)	2778
Eam1104I	CTCTTC	4 cut(s)	926, 1043, 1485, 1804
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	4 cut(s)	926, 1043, 1485, 1804
EciI	GGCGGA	1 cut(s)	888
Ecl136II	GAGCTC	1 cut(s)	2716
Eco130I	CCWWGG	5 cut(s)	58, 1278, 1506, 2007, 2775
Eco24I	GRGCYC	1 cut(s)	2718
Eco31I	GGTCTC	1 cut(s)	1205
Eco32I	GATATC	1 cut(s)	2503
Eco47I	GGWCC	4 cut(s)	166, 1005, 1874, 2451
Eco53kI	GAGCTC	1 cut(s)	2716
Eco57I	CTGAAG	3 cut(s)	239, 381, 2105
Eco81I	CCTNAGG	1 cut(s)	2525
Eco91I	GGTNACC	3 cut(s)	367, 1413, 2236
EcoICRI	GAGCTC	1 cut(s)	2716
EcoO109I	RGGNCCY	2 cut(s)	166, 1874
EcoO65I	GGTNACC	3 cut(s)	367, 1413, 2236
EcoRI	GAATTC	1 cut(s)	2205
EcoRII	CCWGG	4 cut(s)	145, 1715, 2511, 2697
EcoRV	GATATC	1 cut(s)	2503
EcoT14I	CCWWGG	5 cut(s)	58, 1278, 1506, 2007, 2775
EcoT38I	GRGCYC	1 cut(s)	2718
ErhI	CCWWGG	5 cut(s)	58, 1278, 1506, 2007, 2775
FalI	AAGNNNNNCTT	6 cut(s)	878, 910, 1149, 1181, 2527, 2559
FaqI	GGGAC	3 cut(s)	335, 2021, 2085
FauNDI	CATATG	1 cut(s)	1137
FbaI	TGATCA	2 cut(s)	157, 1798
FblI	GTMKAC	1 cut(s)	1186
FokI	GGATG	8 cut(s)	467, 1004, 1073, 1313, 1483, 2293, 2552, 3139
FriOI	GRGCYC	1 cut(s)	2718
FspBI	CTAG	5 cut(s)	66, 623, 2180, 3017, 3122
GlaI	GCGC	1 cut(s)	236
GsaI	CCCAGC	2 cut(s)	2072, 2693
GsuI	CTGGAG	2 cut(s)	401, 2157
HaeIII	GGCC	4 cut(s)	711, 1475, 2697, 2780
HapII	CCGG	3 cut(s)	816, 1269, 2160
HhaI	GCGC	1 cut(s)	237
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	2 cut(s)	192, 1573
HindII	GTYRAC	2 cut(s)	192, 1573
HindIII	AAGCTT	4 cut(s)	1458, 1638, 2333, 2805
HpaII	CCGG	3 cut(s)	816, 1269, 2160
Hpy166II	GTNNAC	9 cut(s)	105, 192, 1099, 1132, 1177, 1187, 1573, 1904, 3085
Hpy8I	GTNNAC	9 cut(s)	105, 192, 1099, 1132, 1177, 1187, 1573, 1904, 3085
Hpy99I	CGWCG	2 cut(s)	718, 3176
HpyCH4IV	ACGT	3 cut(s)	469, 784, 1935
HpyF10VI	GCNNNNNNNGC	6 cut(s)	234, 1071, 1587, 1993, 3008, 3065
HpyF3I	CTNAG	7 cut(s)	177, 280, 1302, 2193, 2525, 3029, 3074
HpySE526I	ACGT	3 cut(s)	469, 784, 1935
HspAI	GCGC	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	2159
Ksp22I	TGATCA	2 cut(s)	157, 1798
LmnI	GCTCC	7 cut(s)	6, 420, 1046, 1668, 1814, 2410, 2721
LweI	GCATC	8 cut(s)	31, 739, 1380, 1812, 2005, 2633, 3055, 3156
MaeI	CTAG	5 cut(s)	66, 623, 2180, 3017, 3122
MaeII	ACGT	3 cut(s)	469, 784, 1935
MbiI	CCGCTC	1 cut(s)	1049
MfeI	CAATTG	1 cut(s)	2657
MflI	RGATCY	6 cut(s)	308, 528, 888, 1274, 1282, 2056
MhlI	GDGCHC	4 cut(s)	107, 213, 681, 2718
MlsI	TGGCCA	1 cut(s)	2780
MluNI	TGGCCA	1 cut(s)	2780
MlyI	GAGTC	3 cut(s)	182, 993, 2148
MmeI	TCCRAC	6 cut(s)	411, 459, 813, 2352, 2410, 2593
Mox20I	TGGCCA	1 cut(s)	2780
MroI	TCCGGA	1 cut(s)	2159
MroXI	GAANNNNTTC	2 cut(s)	1641, 2877
MscI	TGGCCA	1 cut(s)	2780
MseI	TTAA	8 cut(s)	459, 866, 2001, 2346, 2391, 2732, 2925, 2967
Msp20I	TGGCCA	1 cut(s)	2780
MspA1I	CMGCKG	4 cut(s)	42, 231, 287, 3028
MspI	CCGG	3 cut(s)	816, 1269, 2160
MspR9I	CCNGG	5 cut(s)	147, 817, 1717, 2513, 2699
MunI	CAATTG	1 cut(s)	2657
MvaI	CCWGG	4 cut(s)	147, 1717, 2513, 2699
MvnI	CGCG	1 cut(s)	668
MwoI	GCNNNNNNNGC	6 cut(s)	234, 1071, 1587, 1993, 3008, 3065
NciI	CCSGG	1 cut(s)	817
NcoI	CCATGG	5 cut(s)	58, 1278, 1506, 2007, 2775
NdeI	CATATG	1 cut(s)	1137
NheI	GCTAGC	1 cut(s)	622
NlaIV	GGNNCC	9 cut(s)	210, 484, 530, 948, 1006, 1276, 1284, 2217, 2406
NmuCI	GTSAC	9 cut(s)	470, 914, 1081, 1112, 1339, 1501, 1957, 2236, 2830
NspI	RCATGY	7 cut(s)	133, 1078, 1315, 1579, 1663, 3053, 3163
OliI	CACNNNNGTG	1 cut(s)	242
PaeI	GCATGC	2 cut(s)	1078, 1663
PciI	ACATGT	4 cut(s)	1311, 1575, 3049, 3159
PdmI	GAANNNNTTC	2 cut(s)	1641, 2877
PfeI	GAWTC	8 cut(s)	652, 696, 800, 940, 1019, 1559, 1653, 2111
PflFI	GACNNNGTC	1 cut(s)	1706
PfoI	TCCNGGA	1 cut(s)	815
PleI	GAGTC	3 cut(s)	181, 992, 2147
PpsI	GAGTC	3 cut(s)	181, 992, 2147
Ppu21I	YACGTR	2 cut(s)	470, 785
PpuMI	RGGWCCY	2 cut(s)	166, 1874
PscI	ACATGT	4 cut(s)	1311, 1575, 3049, 3159
PsiI	TTATAA	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	2718
Psp5II	RGGWCCY	2 cut(s)	166, 1874
Psp6I	CCWGG	4 cut(s)	145, 1715, 2511, 2697
PspEI	GGTNACC	3 cut(s)	367, 1413, 2236
PspFI	CCCAGC	2 cut(s)	2068, 2689
PspGI	CCWGG	4 cut(s)	145, 1715, 2511, 2697
PspN4I	GGNNCC	9 cut(s)	210, 484, 530, 948, 1006, 1276, 1284, 2217, 2406
PspPI	GGNCC	5 cut(s)	166, 710, 1005, 1874, 2451
PspPPI	RGGWCCY	2 cut(s)	166, 1874
PsuI	RGATCY	6 cut(s)	308, 528, 888, 1274, 1282, 2056
PsyI	GACNNNGTC	1 cut(s)	1706
PvuII	CAGCTG	2 cut(s)	287, 3028
RsaI	GTAC	6 cut(s)	99, 1131, 1859, 2021, 2564, 3084
RsaNI	GTAC	6 cut(s)	98, 1130, 1858, 2020, 2563, 3083
SacI	GAGCTC	1 cut(s)	2718
SaqAI	TTAA	8 cut(s)	459, 866, 2001, 2346, 2391, 2732, 2925, 2967
Sau96I	GGNCC	5 cut(s)	166, 710, 1005, 1874, 2451
SchI	GAGTC	3 cut(s)	182, 993, 2148
ScrFI	CCNGG	5 cut(s)	147, 817, 1717, 2513, 2699
SduI	GDGCHC	4 cut(s)	107, 213, 681, 2718
SfaNI	GCATC	8 cut(s)	31, 739, 1380, 1812, 2005, 2633, 3055, 3156
SfcI	CTRYAG	3 cut(s)	2583, 2628, 3023
SinI	GGWCC	4 cut(s)	166, 1005, 1874, 2451
SmlI	CTYRAG	3 cut(s)	170, 1727, 2573
SmoI	CTYRAG	3 cut(s)	170, 1727, 2573
SpeI	ACTAGT	1 cut(s)	2179
SphI	GCATGC	2 cut(s)	1078, 1663
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	5 cut(s)	66, 623, 2180, 3017, 3122
SstI	GAGCTC	1 cut(s)	2718
StyD4I	CCNGG	5 cut(s)	145, 815, 1715, 2511, 2697
StyI	CCWWGG	5 cut(s)	58, 1278, 1506, 2007, 2775
TaiI	ACGT	3 cut(s)	472, 787, 1938
TaqI	TCGA	6 cut(s)	1251, 1635, 1776, 1941, 1977, 3174
TatI	WGTACW	2 cut(s)	1857, 2562
TauI	GCSGC	5 cut(s)	231, 671, 1724, 2594, 2697
TfiI	GAWTC	8 cut(s)	652, 696, 800, 940, 1019, 1559, 1653, 2111
Tru1I	TTAA	8 cut(s)	459, 866, 2001, 2346, 2391, 2732, 2925, 2967
Tru9I	TTAA	8 cut(s)	459, 866, 2001, 2346, 2391, 2732, 2925, 2967
TseFI	GTSAC	9 cut(s)	470, 914, 1081, 1112, 1339, 1501, 1957, 2236, 2830
Tsp45I	GTSAC	9 cut(s)	470, 914, 1081, 1112, 1339, 1501, 1957, 2236, 2830
TspGWI	ACGGA	1 cut(s)	997
Tth111I	GACNNNGTC	1 cut(s)	1706
VneI	GTGCAC	1 cut(s)	103
VpaK11BI	GGWCC	4 cut(s)	166, 1005, 1874, 2451
XapI	RAATTY	6 cut(s)	382, 577, 1609, 2205, 2298, 2671
XbaI	TCTAGA	1 cut(s)	65
XceI	RCATGY	7 cut(s)	133, 1078, 1315, 1579, 1663, 3053, 3163
XmiI	GTMKAC	1 cut(s)	1186
XmnI	GAANNNNTTC	2 cut(s)	1641, 2877
XspI	CTAG	5 cut(s)	66, 623, 2180, 3017, 3122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.