Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000580.1

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Forward (+)

33064 .. 34550

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgaggtggaggcgtggagctgctgtcatcatatccaagaaagctcgcgatgttcctcaggccaaggccatggattacgttggtggttatgcacttgctcttgatatgactgacagagagattcaagctactgctaagtcactggagaccttgcttgactccgatggcggactctggcgactggtgacccgactcaggcgaccggtgacgggactctggcgatcggtgacgggactctggcgatcggtgacgggactccgacgaccggtgactaaaatcctgcgaccgatgactggaatccagcgaccgatgatcggaattctgagacagaaacgaaaatttccgtctgacccaacccgacctgacttttccggctgcttccggcgatctctggccgtgaaacttaggcagctgatttgtctcctccgtctagtcgtctctgtggcatcctctagcggcgatatccaccgtgtacggggcagcaaggcggcgcagttggtattttcggacccgaccggaaaacgtagctccggtgacttcgtgtcttcatgcttacttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

187

Amino Acids

20.79

Weight (kDa)

11.53

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	8 - 48	4.5e-09	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	3 cut(s)	168, 456, 488
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	318, 338
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	6 cut(s)	195, 209, 265, 293, 314, 475
AgeI	ACCGGT	2 cut(s)	202, 265
AgsI	TTSAA	1 cut(s)	125
AhdI	GACNNNNNGTC	1 cut(s)	541
AluBI	AGCT	5 cut(s)	20, 44, 128, 412, 528
AluI	AGCT	5 cut(s)	20, 44, 128, 412, 528
Alw26I	GTCTC	4 cut(s)	140, 319, 425, 442
AoxI	GGCC	3 cut(s)	60, 66, 393
ApeKI	GCWGC	4 cut(s)	20, 375, 409, 480
ApoI	RAATTY	2 cut(s)	318, 338
AsiGI	ACCGGT	2 cut(s)	202, 265
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	6 cut(s)	196, 217, 238, 259, 280, 545
AvaII	GGWCC	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	7, 362, 421, 492
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	380
BcoDI	GTCTC	4 cut(s)	140, 319, 425, 442
BfaI	CTAG	2 cut(s)	431, 453
BisI	GCNGC	6 cut(s)	21, 376, 410, 457, 481, 489
BlsI	GCNGC	6 cut(s)	22, 377, 411, 458, 482, 490
Bme18I	GGWCC	1 cut(s)	508
BmeRI	GACNNNNNGTC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	63, 69
BsaWI	WCCGGW	4 cut(s)	202, 265, 515, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	6 cut(s)	195, 209, 265, 293, 314, 475
Bse118I	RCCGGY	2 cut(s)	202, 265
Bse1I	ACTGG	3 cut(s)	147, 186, 298
Bse21I	CCTNAGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	63, 69
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	6 cut(s)	195, 209, 265, 293, 314, 475
BseMII	CTCAG	3 cut(s)	71, 208, 314
BseNI	ACTGG	3 cut(s)	147, 186, 298
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	4 cut(s)	7, 362, 421, 492
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	7 cut(s)	203, 224, 245, 266, 287, 308, 516
BshFI	GGCC	3 cut(s)	62, 68, 395
BshTI	ACCGGT	2 cut(s)	202, 265
BsiEI	CGRYCG	7 cut(s)	203, 224, 245, 266, 287, 308, 516
BsiSI	CCGG	6 cut(s)	203, 266, 372, 382, 516, 531
BslFI	GGGAC	3 cut(s)	225, 246, 267
BslI	CCNNNNNNNGG	6 cut(s)	195, 209, 265, 293, 314, 475
BsmAI	GTCTC	4 cut(s)	140, 319, 425, 442
BsmBI	CGTCTC	1 cut(s)	442
BsmFI	GGGAC	3 cut(s)	225, 246, 267
BsnI	GGCC	3 cut(s)	62, 68, 395
Bso31I	GGTCTC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	221, 242, 312, 386
Bsp19I	CCATGG	1 cut(s)	69
Bsp68I	TCGCGA	1 cut(s)	48
BspACI	CCGC	3 cut(s)	168, 456, 488
BspANI	GGCC	3 cut(s)	62, 68, 395
BspCNI	CTCAG	3 cut(s)	70, 207, 315
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	510
BspTNI	GGTCTC	1 cut(s)	140
BsrFI	RCCGGY	2 cut(s)	202, 265
BsrI	ACTGG	3 cut(s)	147, 186, 298
BssAI	RCCGGY	2 cut(s)	202, 265
BssECI	CCNNGG	2 cut(s)	63, 69
BssMI	GATC	4 cut(s)	221, 242, 312, 386
BssT1I	CCWWGG	2 cut(s)	63, 69
Bst4CI	ACNGT	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	5 cut(s)	57, 135, 194, 323, 404
BstDSI	CCRYGG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	4 cut(s)	224, 245, 315, 389
BstMAI	GTCTC	4 cut(s)	140, 319, 425, 442
BstMBI	GATC	4 cut(s)	221, 242, 312, 386
BstMCI	CGRYCG	7 cut(s)	203, 224, 245, 266, 287, 308, 516
BstPI	GGTNACC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	7, 362, 421, 492
BstV2I	GAAGAC	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	62, 68, 395
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	1 cut(s)	140
BtuMI	TCGCGA	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	493
Cfr10I	RCCGGY	2 cut(s)	202, 265
Cfr13I	GGNCC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	473
CspAI	ACCGGT	2 cut(s)	202, 265
CviAII	CATG	2 cut(s)	70, 549
CviJI	RGCY	9 cut(s)	20, 44, 62, 68, 128, 375, 395, 412, 528
CviKI_1	RGCY	9 cut(s)	20, 44, 62, 68, 128, 375, 395, 412, 528
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	5 cut(s)	57, 135, 194, 323, 404
DpnI	GATC	4 cut(s)	223, 244, 314, 388
DpnII	GATC	4 cut(s)	221, 242, 312, 386
DriI	GACNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	393
Eam1105I	GACNNNNNGTC	1 cut(s)	541
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	63, 69
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	508
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	318
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	2 cut(s)	63, 69
ErhI	CCWWGG	2 cut(s)	63, 69
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	2 cut(s)	73, 552
FaiI	YATR	5 cut(s)	32, 71, 90, 107, 550
FaqI	GGGAC	3 cut(s)	225, 246, 267
FatI	CATG	2 cut(s)	69, 548
Fnu4HI	GCNGC	6 cut(s)	21, 376, 410, 457, 481, 489
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	6 cut(s)	21, 376, 410, 457, 481, 489
FspBI	CTAG	2 cut(s)	431, 453
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	6 cut(s)	21, 376, 410, 457, 481, 489
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	62, 68, 395
HapII	CCGG	6 cut(s)	203, 266, 372, 382, 516, 531
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	2 cut(s)	73, 552
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HinfI	GANTC	8 cut(s)	121, 158, 171, 192, 213, 234, 255, 297
HpaII	CCGG	6 cut(s)	203, 266, 372, 382, 516, 531
HphI	GGTGA	6 cut(s)	196, 217, 238, 259, 280, 545
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	6 cut(s)	163, 260, 317, 324, 349, 508
Hpy188III	TCNNGA	2 cut(s)	47, 101
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	2 cut(s)	78, 523
HpyCH4V	TGCA	1 cut(s)	92
HpyF3I	CTNAG	5 cut(s)	57, 135, 194, 323, 404
HpySE526I	ACGT	2 cut(s)	78, 523
Hsp92II	CATG	2 cut(s)	73, 552
HspAI	GCGC	1 cut(s)	491
Kzo9I	GATC	4 cut(s)	221, 242, 312, 386
LmnI	GCTCC	2 cut(s)	17, 533
Lsp1109I	GCAGC	4 cut(s)	7, 362, 421, 492
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	2 cut(s)	431, 453
MaeII	ACGT	2 cut(s)	78, 523
MaeIII	GTNAC	7 cut(s)	138, 184, 205, 226, 247, 268, 533
MalI	GATC	4 cut(s)	223, 244, 314, 388
MboI	GATC	4 cut(s)	221, 242, 312, 386
MboII	GAAGA	1 cut(s)	537
MluCI	AATT	2 cut(s)	318, 338
MlyI	GAGTC	6 cut(s)	152, 165, 186, 207, 228, 249
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	4 cut(s)	3, 66, 434, 460
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	6 cut(s)	203, 266, 372, 382, 516, 531
MvnI	CGCG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	221, 242, 312, 386
NlaIII	CATG	2 cut(s)	73, 552
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	7 cut(s)	138, 184, 205, 226, 247, 268, 533
NruI	TCGCGA	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	121, 297
PinAI	ACCGGT	2 cut(s)	202, 265
PkrI	GCNGC	6 cut(s)	22, 377, 411, 458, 482, 490
Ple19I	CGATCG	2 cut(s)	224, 245
PleI	GAGTC	6 cut(s)	152, 165, 186, 207, 228, 249
PpsI	GAGTC	6 cut(s)	152, 165, 186, 207, 228, 249
PspEI	GGTNACC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	508
PvuI	CGATCG	2 cut(s)	224, 245
PvuII	CAGCTG	1 cut(s)	412
RruI	TCGCGA	1 cut(s)	48
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
SatI	GCNGC	6 cut(s)	21, 376, 410, 457, 481, 489
Sau3AI	GATC	4 cut(s)	221, 242, 312, 386
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	6 cut(s)	152, 165, 186, 207, 228, 249
SfaNI	GCATC	1 cut(s)	455
SinI	GGWCC	1 cut(s)	508
Sse9I	AATT	2 cut(s)	318, 338
SsiI	CCGC	3 cut(s)	168, 456, 488
SspMI	CTAG	2 cut(s)	431, 453
StyI	CCWWGG	2 cut(s)	63, 69
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	2 cut(s)	81, 526
TaqII	GACCGA	2 cut(s)	301, 322
TasI	AATT	2 cut(s)	318, 338
TauI	GCSGC	2 cut(s)	459, 491
TfiI	GAWTC	2 cut(s)	121, 297
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	7 cut(s)	138, 184, 205, 226, 247, 268, 533
TseI	GCWGC	4 cut(s)	20, 375, 409, 480
Tsp45I	GTSAC	7 cut(s)	138, 184, 205, 226, 247, 268, 533
TspDTI	ATGAA	1 cut(s)	537
TspGWI	ACGGA	2 cut(s)	333, 416
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	318, 338
XspI	CTAG	2 cut(s)	431, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.