Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001426.1

Orthogroup ID

OG0001775

Physical Location & Seq

Genomic Coordinates Forward (+)

33594 .. 39264

Gene Structure 5671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

atggctcacgacaacggtgacggcgttactcacgacctgttctcgctgctcgcctccggcgatcgggacttcctcctccgtaacaacggcgaccaggtaaagatcaatactttgactggtaagattttggggttgtatttctctggctcatggtgtggtccatgtcgtcgtttcaccccaaacttggtggaggtctaccaggaccttgcttccaaaggggattttgaagttgtgtttgtctcttctgatagagatgaggagtcattcagtggctacttctctgaaatgccgtggcttgcggttcccttttcggatttggagacccgaaaaggcctgaaagacttgttcaaagtcaggggaattcctcatcttgttgttattgatgccaatgggaaggtttccactgataaagggactgtggttgtgagggagtatggtgtagaggggtatccgttcaccgcggagaagattagtctcttgaaagagcaagaggaggcggctaagaagaatcagtccttgagttctctcttggtttctaattctcgggattacttggtttcgagtgatgggaataaggtgtctgtgtctgagcttgaaggaaagatagttggtctgtatttctcacttaatattcacaagccatgcaaagactttgctcagacacttctgaagttctataagagtctcaaggagaaaggagagaactttgagatagtgttggtatctttagactatgaagaagaacacttcaaagaagggattgcagtcccatggttggcattgccatttaaggacaagaactgcaaaaaactggctcgctactttgagcttgagacagtaccaacactagttataattgggcaagatggaaagaccttacaccccaatgtgactgaacttattgaagagcatgggattgaagcctacccattttcagcagagaaggttgctgagcttgctgagattgagaaggccaaactcgaagcacagactctggagtcgcttttggtgactgaagacttagactttgtgatagagacgagcggtgccaaggtaccggtgtctgagcttgttgggaagcacattctgctctatttctcagctcattggtgtcccccatgtcgttcattcctgcctaagctcatagcagcatatcacgagatcaaggccaaggacaatgcatttgaaatcatctttatctcaagtgatcgtgatcaatcctccttcgatgacttcttttcgagcatgccttggttagccctcccatttggtgatccaaggaagatgttcctgcagcgcaaattcaaaatccaaggcattcctgctgtggtagctatcagccccactggcaagacactcaccacgacagcccgaaagcttatactagctcatggtgctgatgcttttccattcactgaagagcatttgaagcatttggaagaaaaggtagacgaagaagcaaaggggtggcctgagaaagtgaagagtgagctacatgttgaacatgagcttgcacgcactcgttgccacgaatatgtgtgtaatgggtgtagggagtccggaagtggttggtctttttcctgtaagaagtgtgactttgatcttcacccacagtgtgctctgaagaacaatgaagcaacaaaggatgatcctgagaccaaggcaaaggagggatatgtttgtgatgatttgctctttgcagtagtgatgggtgagacagaggtgcccacgacaagcataggcatccggaagaacgagaaaaatgggcgcctcaaggcattggatgtagtgctctctaaagcttttgtccaggttcctcacaagctacagaattttcttaagtcacagtttagaagactaccaaaagctgatggagttaaaacagtgagctctgtccctaaaaaggcttcatctttggaggttgacctggaaaagcagttgcaagcatggagagaaaatccttcatgggatgatcaaacaccacatataaaggtcagtgtgccaaaaggctctctctgcaacctcagtgtaaacgtcaatgttgggttgcccccagatgcagtatataatattgtaactgaccccgacaataagagggttttcaagaatattaaggaggtgatatccagaagagttttggttgacgaaggtcttaggcaggttgttgatctagagcaagcagctatatggaaatttctttggtggtcagggaccattgcagttcatgttttagtagatcaaaacagagaagaccactcgatgaagttcaagcaagtcaaaacagggtttatggagagatttgaaggctgctggagagtggagcctctttttgttgatgaaaaaacctgctttccctataaacccacaacatgggcagactataattcacacactggaggcaaaggaaggatcggatcaaaggtgagcttggaccaactgatccaaccgtctattgttcctcccccacccatttcttggtatctgaggggtatcaccgccaagaccacagagatgttgataaatgatcttcttgctgaagccgccagaatacggggagaattaaaccctgagaagtctgataaagaggttgaaatgtctgaggaagtacttaatcaagttgataacacctgtaacatcaaagaaagatgggctatccataggagaaatgcaaagcaatgtcatcggaggctaccaactgccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006935 GO:0008150 GO:0008152 GO:0009605 GO:0009636 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010183 GO:0010769 GO:0015036 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045595 GO:0046686 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0051716 GO:0055114 GO:0060284 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0080092 GO:0097237 GO:0098754 GO:0098869 GO:1990748 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

901

Amino Acids

101.7

Weight (kDa)

6.17

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	25 - 133	1.3e-07	AhpC/TSA family
Redoxin	PF08534	27 - 135	4.8e-07	Redoxin
Thioredoxin_2	PF13098	39 - 132	9.4e-06	Thioredoxin-like domain
Thioredoxin_8	PF13905	40 - 133	6.3e-28	Thioredoxin-like
Thioredoxin_8	PF13905	200 - 291	2.6e-22	Thioredoxin-like
AhpC-TSA	PF00578	347 - 413	1.2e-07	AhpC/TSA family
Thioredoxin_8	PF13905	359 - 451	4.3e-26	Thioredoxin-like
Thioredoxin_2	PF13098	359 - 449	6.4e-06	Thioredoxin-like domain
C1_2	PF03107	499 - 540	2.2e-06	C1 domain
DUF220	PF02713	736 - 807	2.1e-28	Domain of unknown function DUF220

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70480 AT1G70480
fragaria_vesca	FvH4_4g34241 FvH4_4g34250 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260
malus_domestica	MD13G1093300.v1.1 MD13G1093500.v1.1 MD16G1094500.v1.1 MD16G1094600.v1.1 MD16G1094700.v1.1
prunus_persica	Prupe.1G251900_v2.0.a1 Prupe.1G252000_v2.0.a1
pyrus_communis	pycom13g08130 pycom13g08140 pycom16g08030 pycom16g08040 pycom16g08050
rosa_chinensis	RchiOBHm_Chr4g0443711 RchiOBHm_Chr6g0250421
rosa_laevigata	RLG00000005898 RLG00000005899 RLG00000005900
rosa_multiflora	Rmu_co8463221.1_g000001 Rmu_sc0001426.1_g000010 Rmu_sc0001426.1_g000011 Rmu_sc0001426.1_g000013 Rmu_sc0008739.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384250 Rroxscaffold_5G00384260 Rroxscaffold_5G00384270
rosa_rugosa	Rorug05G0496400 Rorug05G0496500
rosa_samantha	Rh4AG406400 Rh4AG406500 Rh4AG406600 Rh4BG417400 Rh4BG417500 Rh4BG417600 Rh4BG417700 Rh4CG431900 Rh4DG413000
rosa_wichuraiana	Rw4G034900 Rw4G034910 Rw4G034920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AasI	GACNNNNNNGTC	1 cut(s)	997
Acc36I	ACCTGC	2 cut(s)	2149, 2354
Acc65I	GGTACC	1 cut(s)	1054
AccB1I	GGYRCC	4 cut(s)	1046, 1054, 1723, 1767
AccB7I	CCANNNNNTGG	2 cut(s)	2370, 2475
AccBSI	CCGCTC	1 cut(s)	1044
AccI	GTMKAC	2 cut(s)	195, 1449
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	2 cut(s)	1559, 1746
AciI	CCGC	7 cut(s)	299, 459, 461, 497, 1044, 2496, 2541
AclWI	GGATC	5 cut(s)	1268, 1643, 2417, 2422, 2434
AcsI	RAATTY	4 cut(s)	360, 1301, 1831, 2192
AcuI	CTGAAG	5 cut(s)	689, 1035, 1437, 1643, 2556
AcyI	GRCGYC	1 cut(s)	1768
AdeI	CACNNNGTG	1 cut(s)	1616
AfaI	GTAC	3 cut(s)	840, 1056, 2607
AfiI	CCNNNNNNNGG	7 cut(s)	63, 184, 775, 1903, 2370, 2475, 2550
AflII	CTTAAG	1 cut(s)	1838
AflIII	ACRYGT	1 cut(s)	1495
AgeI	ACCGGT	1 cut(s)	1057
AhlI	ACTAGT	1 cut(s)	847
AjnI	CCWGG	4 cut(s)	93, 198, 1809, 1926
Alw21I	GWGCWC	3 cut(s)	1621, 1794, 1892
Alw26I	GTCTC	8 cut(s)	244, 314, 479, 689, 827, 1031, 1649, 1709
AlwI	GGATC	5 cut(s)	1268, 1643, 2417, 2422, 2434
AlwNI	CAGNNNCTG	1 cut(s)	994
Ama87I	CYCGRG	1 cut(s)	543
Aor13HI	TCCGGA	2 cut(s)	1559, 1746
AoxI	GGCC	4 cut(s)	331, 972, 1167, 1469
ApeKI	GCWGC	5 cut(s)	46, 1148, 1294, 2180, 2307
ApoI	RAATTY	4 cut(s)	360, 1301, 1831, 2192
ArsI	GACNNNNNNTTYG	4 cut(s)	1010, 1042, 1166, 1198
AsiGI	ACCGGT	1 cut(s)	1057
Asp700I	GAANNNNTTC	1 cut(s)	1286
Asp718I	GGTACC	1 cut(s)	1054
AspLEI	GCGC	2 cut(s)	1299, 1770
AspS9I	GGNCC	4 cut(s)	158, 202, 2211, 2431
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	4 cut(s)	158, 202, 2211, 2431
BaeGI	GKGCMC	1 cut(s)	1728
BaeI	ACNNNNGTAYC	2 cut(s)	1046, 1079
BanI	GGYRCC	4 cut(s)	1046, 1054, 1723, 1767
BanII	GRGCYC	1 cut(s)	1892
BauI	CACGAG	1 cut(s)	1157
BbsI	GAAGAC	3 cut(s)	1023, 1861, 2256
Bbv12I	GWGCWC	3 cut(s)	1621, 1794, 1892
BbvI	GCAGC	5 cut(s)	33, 1160, 1306, 2192, 2294
BccI	CCATC	5 cut(s)	560, 860, 1702, 1865, 2640
BceAI	ACGGC	3 cut(s)	37, 103, 274
BcgI	CGANNNNNNTGC	2 cut(s)	2663, 2697
BciT130I	CCWGG	4 cut(s)	95, 200, 1811, 1928
BciVI	GTATCC	1 cut(s)	459
BclI	TGATCA	2 cut(s)	1213, 1972
BcoDI	GTCTC	8 cut(s)	244, 314, 479, 689, 827, 1031, 1649, 1709
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	3 cut(s)	848, 1385, 2171
BfmI	CTRYAG	2 cut(s)	1292, 1826
BfoI	RGCGCY	1 cut(s)	1771
BfrI	CTTAAG	1 cut(s)	1838
BfuAI	ACCTGC	2 cut(s)	2149, 2354
BfuI	GTATCC	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	1347
BisI	GCNGC	7 cut(s)	47, 498, 1149, 1295, 2181, 2308, 2541
BlpI	GCTNAGC	1 cut(s)	951
BlsI	GCNGC	7 cut(s)	48, 499, 1150, 1296, 2182, 2309, 2542
BmcAI	AGTACT	1 cut(s)	2607
Bme1390I	CCNGG	4 cut(s)	95, 200, 1811, 1928
Bme18I	GGWCC	4 cut(s)	158, 202, 2211, 2431
BmeT110I	CYCGRG	1 cut(s)	543
BmgT120I	GGNCC	4 cut(s)	158, 202, 2211, 2431
BmiI	GGNNCC	8 cut(s)	303, 1048, 1056, 1725, 1769, 1815, 2212, 2322
BmrFI	CCNGG	4 cut(s)	95, 200, 1811, 1928
BmsI	GCATC	4 cut(s)	373, 1390, 1752, 2047
BoxI	GACNNNNGTC	1 cut(s)	2148
BpiI	GAAGAC	3 cut(s)	1023, 1861, 2256
BpmI	CTGGAG	3 cut(s)	1016, 2332, 2415
Bpu10I	CCTNAGC	1 cut(s)	1137
Bpu1102I	GCTNAGC	1 cut(s)	951
BpuEI	CTTGAG	5 cut(s)	538, 671, 851, 1186, 1757
BsaBI	GATNNNNATC	1 cut(s)	1212
BsaHI	GRCGYC	1 cut(s)	1768
BsaI	GGTCTC	2 cut(s)	314, 1649
BsaJI	CCNNGG	9 cut(s)	290, 459, 770, 1050, 1170, 1250, 1277, 1312, 1659
BsaWI	WCCGGW	3 cut(s)	1057, 1559, 1746
Bsc4I	CCNNNNNNNGG	7 cut(s)	63, 184, 775, 1903, 2370, 2475, 2550
Bse118I	RCCGGY	1 cut(s)	1057
Bse1I	ACTGG	4 cut(s)	121, 816, 1351, 2398
Bse3DI	GCAATG	3 cut(s)	779, 2214, 2681
Bse8I	GATNNNNATC	1 cut(s)	1212
BseAI	TCCGGA	2 cut(s)	1559, 1746
BseBI	CCWGG	4 cut(s)	95, 200, 1811, 1928
BseDI	CCNNGG	9 cut(s)	290, 459, 770, 1050, 1170, 1250, 1277, 1312, 1659
BseGI	GGATG	4 cut(s)	1651, 1743, 1789, 1975
BseJI	GATNNNNATC	1 cut(s)	1212
BseLI	CCNNNNNNNGG	7 cut(s)	63, 184, 775, 1903, 2370, 2475, 2550
BseMI	GCAATG	3 cut(s)	779, 2214, 2681
BseNI	ACTGG	4 cut(s)	121, 816, 1351, 2398
BseRI	GAGGAG	3 cut(s)	65, 272, 506
BseSI	GKGCMC	1 cut(s)	1728
BseXI	GCAGC	5 cut(s)	33, 1160, 1306, 2192, 2294
Bsh1236I	CGCG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	4 cut(s)	333, 974, 1169, 1471
BshNI	GGYRCC	4 cut(s)	1046, 1054, 1723, 1767
BshTI	ACCGGT	1 cut(s)	1057
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	3 cut(s)	1621, 1794, 1892
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	4 cut(s)	57, 1058, 1560, 1747
BslFI	GGGAC	6 cut(s)	80, 427, 752, 1098, 1880, 2224
BslI	CCNNNNNNNGG	7 cut(s)	63, 184, 775, 1903, 2370, 2475, 2550
BsmAI	GTCTC	8 cut(s)	244, 314, 479, 689, 827, 1031, 1649, 1709
BsmBI	CGTCTC	1 cut(s)	1031
BsmFI	GGGAC	6 cut(s)	80, 427, 752, 1098, 1880, 2224
BsmI	GAATGC	1 cut(s)	1317
BsnI	GGCC	4 cut(s)	333, 974, 1169, 1471
Bso31I	GGTCTC	2 cut(s)	314, 1649
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	4 cut(s)	1621, 1728, 1794, 1892
Bsp13I	TCCGGA	2 cut(s)	1559, 1746
Bsp1720I	GCTNAGC	1 cut(s)	951
Bsp19I	CCATGG	1 cut(s)	770
BspACI	CCGC	7 cut(s)	299, 459, 461, 497, 1044, 2496, 2541
BspANI	GGCC	4 cut(s)	333, 974, 1169, 1471
BspEI	TCCGGA	2 cut(s)	1559, 1746
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	8 cut(s)	303, 1048, 1056, 1725, 1769, 1815, 2212, 2322
BspMAI	CTGCAG	1 cut(s)	1296
BspMI	ACCTGC	2 cut(s)	2149, 2354
BspPI	GGATC	5 cut(s)	1268, 1643, 2417, 2422, 2434
BspQI	GCTCTTC	2 cut(s)	900, 1413
BspT107I	GGYRCC	4 cut(s)	1046, 1054, 1723, 1767
BspTI	CTTAAG	1 cut(s)	1838
BspTNI	GGTCTC	2 cut(s)	314, 1649
BsrBI	CCGCTC	1 cut(s)	1044
BsrDI	GCAATG	3 cut(s)	779, 2214, 2681
BsrFI	RCCGGY	1 cut(s)	1057
BsrI	ACTGG	4 cut(s)	121, 816, 1351, 2398
BssAI	RCCGGY	1 cut(s)	1057
BssECI	CCNNGG	9 cut(s)	290, 459, 770, 1050, 1170, 1250, 1277, 1312, 1659
BssNI	GRCGYC	1 cut(s)	1768
BssSI	CACGAG	1 cut(s)	1157
BssT1I	CCWWGG	7 cut(s)	770, 1050, 1170, 1250, 1277, 1312, 1659
Bst2BI	CACGAG	1 cut(s)	1157
Bst2UI	CCWGG	4 cut(s)	95, 200, 1811, 1928
Bst4CI	ACNGT	7 cut(s)	17, 418, 838, 1614, 1848, 1885, 2448
Bst6I	CTCTTC	5 cut(s)	247, 900, 1413, 1478, 2125
BstACI	GRCGYC	1 cut(s)	1768
BstAFI	CTTAAG	1 cut(s)	1838
BstAPI	GCANNNNNTGC	2 cut(s)	1087, 1524
BstC8I	GCNNGC	9 cut(s)	51, 297, 817, 957, 1247, 1512, 1516, 1944, 2178
BstDSI	CCRYGG	3 cut(s)	290, 459, 770
BstF5I	GGATG	4 cut(s)	1651, 1743, 1789, 1975
BstFNI	CGCG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	1771
BstHHI	GCGC	2 cut(s)	1299, 1770
BstMAI	GTCTC	8 cut(s)	244, 314, 479, 689, 827, 1031, 1649, 1709
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	9 cut(s)	956, 1087, 1331, 1347, 1394, 1429, 1524, 2016, 2540
BstNI	CCWGG	4 cut(s)	95, 200, 1811, 1928
BstNSI	RCATGY	2 cut(s)	1249, 1499
BstPAI	GACNNNNGTC	1 cut(s)	2148
BstSCI	CCNGG	4 cut(s)	93, 198, 1809, 1926
BstSFI	CTRYAG	2 cut(s)	1292, 1826
BstSLI	GKGCMC	1 cut(s)	1728
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	5 cut(s)	33, 1160, 1306, 2192, 2294
BstV2I	GAAGAC	3 cut(s)	1023, 1861, 2256
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	4 cut(s)	333, 974, 1169, 1471
BtgI	CCRYGG	3 cut(s)	290, 459, 770
BtsCI	GGATG	4 cut(s)	1651, 1743, 1789, 1975
BtsIMutI	CAGTG	9 cut(s)	274, 402, 1344, 1413, 1619, 1890, 2002, 2032, 2391
BveI	ACCTGC	2 cut(s)	2149, 2354
Cac8I	GCNNGC	9 cut(s)	51, 297, 817, 957, 1247, 1512, 1516, 1944, 2178
CaiI	CAGNNNCTG	1 cut(s)	994
CfoI	GCGC	2 cut(s)	1299, 1770
Cfr10I	RCCGGY	1 cut(s)	1057
Cfr13I	GGNCC	4 cut(s)	158, 202, 2211, 2431
Cfr42I	CCGCGG	1 cut(s)	462
CsiI	ACCWGGT	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	839, 1055, 2606
CspAI	ACCGGT	1 cut(s)	1057
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviQI	GTAC	3 cut(s)	839, 1055, 2606
DinI	GGCGCC	1 cut(s)	1769
DraIII	CACNNNGTG	1 cut(s)	1616
DrdI	GACNNNNNNGTC	1 cut(s)	997
DseDI	GACNNNNNNGTC	1 cut(s)	997
Eam1104I	CTCTTC	5 cut(s)	247, 900, 1413, 1478, 2125
EarI	CTCTTC	5 cut(s)	247, 900, 1413, 1478, 2125
Ecl136II	GAGCTC	1 cut(s)	1890
Eco130I	CCWWGG	7 cut(s)	770, 1050, 1170, 1250, 1277, 1312, 1659
Eco147I	AGGCCT	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	1892
Eco31I	GGTCTC	2 cut(s)	314, 1649
Eco32I	GATATC	1 cut(s)	2124
Eco47I	GGWCC	4 cut(s)	158, 202, 2211, 2431
Eco53kI	GAGCTC	1 cut(s)	1890
Eco57I	CTGAAG	5 cut(s)	689, 1035, 1437, 1643, 2556
Eco88I	CYCGRG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	1890
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	4 cut(s)	93, 198, 1809, 1926
EcoRV	GATATC	1 cut(s)	2124
EcoT14I	CCWWGG	7 cut(s)	770, 1050, 1170, 1250, 1277, 1312, 1659
EcoT22I	ATGCAT	1 cut(s)	1183
EcoT38I	GRGCYC	1 cut(s)	1892
EgeI	GGCGCC	1 cut(s)	1769
EheI	GGCGCC	1 cut(s)	1769
ErhI	CCWWGG	7 cut(s)	770, 1050, 1170, 1250, 1277, 1312, 1659
Esp3I	CGTCTC	1 cut(s)	1031
FalI	AAGNNNNNCTT	4 cut(s)	1580, 1612, 2411, 2443
FaqI	GGGAC	6 cut(s)	80, 427, 752, 1098, 1880, 2224
FbaI	TGATCA	2 cut(s)	1213, 1972
FblI	GTMKAC	2 cut(s)	195, 1449
Fnu4HI	GCNGC	7 cut(s)	47, 498, 1149, 1295, 2181, 2308, 2541
FokI	GGATG	4 cut(s)	1658, 1730, 1796, 1982
FriOI	GRGCYC	1 cut(s)	1892
Fsp4HI	GCNGC	7 cut(s)	47, 498, 1149, 1295, 2181, 2308, 2541
FspBI	CTAG	3 cut(s)	848, 1385, 2171
GlaI	GCGC	2 cut(s)	1298, 1769
GluI	GCNGC	7 cut(s)	47, 498, 1149, 1295, 2181, 2308, 2541
GsuI	CTGGAG	3 cut(s)	1016, 2332, 2415
HaeII	RGCGCY	1 cut(s)	1771
HaeIII	GGCC	4 cut(s)	333, 974, 1169, 1471
HapII	CCGG	4 cut(s)	57, 1058, 1560, 1747
HhaI	GCGC	2 cut(s)	1299, 1770
Hin1I	GRCGYC	1 cut(s)	1768
Hin6I	GCGC	2 cut(s)	1297, 1768
HinP1I	GCGC	2 cut(s)	1297, 1768
HincII	GTYRAC	2 cut(s)	1924, 2143
HindII	GTYRAC	2 cut(s)	1924, 2143
HindIII	AAGCTT	2 cut(s)	1376, 1800
HinfI	GANTC	6 cut(s)	260, 508, 682, 991, 998, 1556
HpaII	CCGG	4 cut(s)	57, 1058, 1560, 1747
Hpy166II	GTNNAC	6 cut(s)	196, 456, 1450, 1924, 2032, 2143
Hpy8I	GTNNAC	6 cut(s)	196, 456, 1450, 1924, 2032, 2143
Hpy99I	CGWCG	1 cut(s)	171
HpyCH4III	ACNGT	7 cut(s)	17, 418, 838, 1614, 1848, 1885, 2448
HpyCH4IV	ACGT	1 cut(s)	2034
HpyF10VI	GCNNNNNNNGC	9 cut(s)	956, 1087, 1331, 1347, 1394, 1429, 1524, 2016, 2540
HpySE526I	ACGT	1 cut(s)	2034
Hsp92I	GRCGYC	1 cut(s)	1768
HspAI	GCGC	2 cut(s)	1297, 1768
KasI	GGCGCC	1 cut(s)	1767
Kpn2I	TCCGGA	2 cut(s)	1559, 1746
KpnI	GGTACC	1 cut(s)	1058
Ksp22I	TGATCA	2 cut(s)	1213, 1972
KspI	CCGCGG	1 cut(s)	462
LguI	GCTCTTC	2 cut(s)	900, 1413
LmnI	GCTCC	1 cut(s)	2320
Lsp1109I	GCAGC	5 cut(s)	33, 1160, 1306, 2192, 2294
LweI	GCATC	4 cut(s)	373, 1390, 1752, 2047
MabI	ACCWGGT	1 cut(s)	93
MaeI	CTAG	3 cut(s)	848, 1385, 2171
MaeII	ACGT	1 cut(s)	2034
MaeIII	GTNAC	9 cut(s)	17, 25, 80, 889, 1009, 1592, 1842, 2074, 2630
MbiI	CCGCTC	1 cut(s)	1044
MhlI	GDGCHC	4 cut(s)	1621, 1728, 1794, 1892
MluCI	AATT	8 cut(s)	360, 538, 855, 1301, 1831, 2192, 2383, 2558
Mly113I	GGCGCC	1 cut(s)	1768
MlyI	GAGTC	5 cut(s)	269, 691, 985, 1007, 1565
MmeI	TCCRAC	1 cut(s)	2467
Mph1103I	ATGCAT	1 cut(s)	1183
MroI	TCCGGA	2 cut(s)	1559, 1746
MroXI	GAANNNNTTC	1 cut(s)	1286
MseI	TTAA	7 cut(s)	627, 789, 1839, 1878, 2112, 2561, 2610
MslI	CAYNNNNRTG	3 cut(s)	885, 1533, 2510
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	1838
MspI	CCGG	4 cut(s)	57, 1058, 1560, 1747
MspR9I	CCNGG	4 cut(s)	95, 200, 1811, 1928
Mva1269I	GAATGC	1 cut(s)	1317
MvaI	CCWGG	4 cut(s)	95, 200, 1811, 1928
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	9 cut(s)	956, 1087, 1331, 1347, 1394, 1429, 1524, 2016, 2540
NarI	GGCGCC	1 cut(s)	1768
NcoI	CCATGG	1 cut(s)	770
NlaIV	GGNNCC	8 cut(s)	303, 1048, 1056, 1725, 1769, 1815, 2212, 2322
NmuCI	GTSAC	5 cut(s)	17, 889, 1009, 1592, 1842
NsiI	ATGCAT	1 cut(s)	1183
NspI	RCATGY	2 cut(s)	1249, 1499
PaeI	GCATGC	1 cut(s)	1249
PceI	AGGCCT	1 cut(s)	333
PciI	ACATGT	1 cut(s)	1495
PciSI	GCTCTTC	2 cut(s)	900, 1413
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 57
PctI	GAATGC	1 cut(s)	1317
PdmI	GAANNNNTTC	1 cut(s)	1286
PfeI	GAWTC	1 cut(s)	508
PflMI	CCANNNNNTGG	2 cut(s)	2370, 2475
PinAI	ACCGGT	1 cut(s)	1057
PkrI	GCNGC	7 cut(s)	48, 499, 1150, 1296, 2182, 2309, 2542
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	5 cut(s)	268, 690, 985, 1006, 1564
PluTI	GGCGCC	1 cut(s)	1771
PpsI	GAGTC	5 cut(s)	268, 690, 985, 1006, 1564
PpuMI	RGGWCCY	1 cut(s)	202
PscI	ACATGT	1 cut(s)	1495
PshAI	GACNNNNGTC	1 cut(s)	2148
PsiI	TTATAA	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	1892
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	4 cut(s)	93, 198, 1809, 1926
PspGI	CCWGG	4 cut(s)	93, 198, 1809, 1926
PspN4I	GGNNCC	8 cut(s)	303, 1048, 1056, 1725, 1769, 1815, 2212, 2322
PspPI	GGNCC	4 cut(s)	158, 202, 2211, 2431
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	1296
PstNI	CAGNNNCTG	1 cut(s)	994
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	3 cut(s)	840, 1056, 2607
RsaNI	GTAC	3 cut(s)	839, 1055, 2606
RseI	CAYNNNNRTG	3 cut(s)	885, 1533, 2510
SacI	GAGCTC	1 cut(s)	1892
SacII	CCGCGG	1 cut(s)	462
SapI	GCTCTTC	2 cut(s)	900, 1413
SaqAI	TTAA	7 cut(s)	627, 789, 1839, 1878, 2112, 2561, 2610
SatI	GCNGC	7 cut(s)	47, 498, 1149, 1295, 2181, 2308, 2541
Sau96I	GGNCC	4 cut(s)	158, 202, 2211, 2431
ScaI	AGTACT	1 cut(s)	2607
SchI	GAGTC	5 cut(s)	269, 691, 985, 1007, 1565
ScrFI	CCNGG	4 cut(s)	95, 200, 1811, 1928
SduI	GDGCHC	4 cut(s)	1621, 1728, 1794, 1892
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	4 cut(s)	373, 1390, 1752, 2047
SfcI	CTRYAG	2 cut(s)	1292, 1826
SfoI	GGCGCC	1 cut(s)	1769
Sfr303I	CCGCGG	1 cut(s)	462
SgrBI	CCGCGG	1 cut(s)	462
SinI	GGWCC	4 cut(s)	158, 202, 2211, 2431
SmiMI	CAYNNNNRTG	3 cut(s)	885, 1533, 2510
SmlI	CTYRAG	6 cut(s)	517, 686, 830, 1201, 1772, 1838
SmoI	CTYRAG	6 cut(s)	517, 686, 830, 1201, 1772, 1838
SpeI	ACTAGT	1 cut(s)	847
SphI	GCATGC	1 cut(s)	1249
Sse9I	AATT	8 cut(s)	360, 538, 855, 1301, 1831, 2192, 2383, 2558
SseBI	AGGCCT	1 cut(s)	333
SsiI	CCGC	7 cut(s)	299, 459, 461, 497, 1044, 2496, 2541
SspDI	GGCGCC	1 cut(s)	1767
SspI	AATATT	3 cut(s)	631, 2071, 2110
SspMI	CTAG	3 cut(s)	848, 1385, 2171
SstI	GAGCTC	1 cut(s)	1892
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	4 cut(s)	93, 198, 1809, 1926
StyI	CCWWGG	7 cut(s)	770, 1050, 1170, 1250, 1277, 1312, 1659
TaaI	ACNGT	7 cut(s)	17, 418, 838, 1614, 1848, 1885, 2448
TaiI	ACGT	1 cut(s)	2037
TaqI	TCGA	5 cut(s)	560, 981, 1227, 1241, 2258
TasI	AATT	8 cut(s)	360, 538, 855, 1301, 1831, 2192, 2383, 2558
TatI	WGTACW	1 cut(s)	2605
TauI	GCSGC	2 cut(s)	500, 2543
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	7 cut(s)	627, 789, 1839, 1878, 2112, 2561, 2610
Tru9I	TTAA	7 cut(s)	627, 789, 1839, 1878, 2112, 2561, 2610
TscAI	CASTG	9 cut(s)	274, 409, 1351, 1420, 1619, 1890, 2002, 2032, 2398
TseFI	GTSAC	5 cut(s)	17, 889, 1009, 1592, 1842
TseI	GCWGC	5 cut(s)	46, 1148, 1294, 2180, 2307
Tsp45I	GTSAC	5 cut(s)	17, 889, 1009, 1592, 1842
TspDTI	ATGAA	8 cut(s)	750, 1116, 1647, 1899, 1953, 2213, 2276, 2352
TspGWI	ACGGA	2 cut(s)	68, 441
TspRI	CASTG	9 cut(s)	274, 409, 1351, 1420, 1619, 1890, 2002, 2032, 2398
Van91I	CCANNNNNTGG	2 cut(s)	2370, 2475
Vha464I	CTTAAG	1 cut(s)	1838
VpaK11BI	GGWCC	4 cut(s)	158, 202, 2211, 2431
XapI	RAATTY	4 cut(s)	360, 1301, 1831, 2192
XbaI	TCTAGA	1 cut(s)	2170
XceI	RCATGY	2 cut(s)	1249, 1499
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2134, 2472
XmiI	GTMKAC	2 cut(s)	195, 1449
XmnI	GAANNNNTTC	1 cut(s)	1286
XspI	CTAG	3 cut(s)	848, 1385, 2171
ZrmI	AGTACT	1 cut(s)	2607
Zsp2I	ATGCAT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.