Rmu_sc0001891.1_g000054

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001891.1
OG0002177
Physical Location & Seq
Forward (+)
189560 .. 190009
450 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
atgctcttcgccttggccctctggaccaacttcagccgaaacagaagcctcaagtggatgatcacgattttctcgctctccacgcttcccaatactctggtcatgggaatcccgctgctgatcgccatgtacggccaccgaatcctggaggacatgacccagaaacctccagaaggattcagagccttattgagcatgatgatcgcaggtctccagaaggattcagagcctccagaaggtttctgggtcgttgatcagatcgaaggcttatttctctctttccacgacccatgcatggacgatctgtgtctagtggcatgtcggcgtcgtcgagaaaaacctaacgccagtagttcgccatcgtatcgttgccgggagatttctgatcgagttgcacgtttgggtcaaggggtcgtcgattgggtctcgaaggctctgaatccttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

8.43

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 2 - 46 1.4e-09 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AciI CCGC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 4 cut(s) 145, 173, 236, 295
AjnI CCWGG 1 cut(s) 144
Alw26I GTCTC 2 cut(s) 215, 430
AoxI GGCC 2 cut(s) 15, 133
ApeKI GCWGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 16, 24
AsuC2I CCSGG 1 cut(s) 374
AvaII GGWCC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 2 cut(s) 60, 253
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 215, 430
BfaI CTAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 146, 374
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 16, 24
BmrFI CCNGG 2 cut(s) 146, 374
BpmI CTGGAG 4 cut(s) 153, 167, 197, 216
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 325
BsaI GGTCTC 2 cut(s) 215, 430
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 173, 236, 295
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 4 cut(s) 145, 173, 236, 295
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 2 cut(s) 17, 135
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 4 cut(s) 145, 173, 236, 295
BsmAI GTCTC 2 cut(s) 215, 430
BsnI GGCC 2 cut(s) 17, 135
Bso31I GGTCTC 2 cut(s) 215, 430
Bsp143I GATC 7 cut(s) 60, 120, 201, 253, 258, 301, 385
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 17, 135
BspMI ACCTGC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 11
BspTNI GGTCTC 2 cut(s) 215, 430
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 7 cut(s) 60, 120, 201, 253, 258, 301, 385
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 325
BstENI CCTNNNNNAGG 2 cut(s) 171, 234
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 7 cut(s) 63, 123, 204, 256, 261, 304, 388
BstMAI GTCTC 2 cut(s) 215, 430
BstMBI GATC 7 cut(s) 60, 120, 201, 253, 258, 301, 385
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 2 cut(s) 144, 372
BstV1I GCAGC 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuRI GGCC 2 cut(s) 17, 135
BtsCI GGATG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 16, 24
CseI GACGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 130
CviAII CATG 7 cut(s) 103, 127, 154, 196, 291, 295, 318
CviJI RGCY 8 cut(s) 17, 36, 48, 135, 185, 229, 267, 434
CviKI_1 RGCY 8 cut(s) 17, 36, 48, 135, 185, 229, 267, 434
CviQI GTAC 1 cut(s) 130
DpnI GATC 7 cut(s) 62, 122, 203, 255, 260, 303, 387
DpnII GATC 7 cut(s) 60, 120, 201, 253, 258, 301, 385
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 12
Eco31I GGTCTC 2 cut(s) 215, 430
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 16
EcoNI CCTNNNNNAGG 2 cut(s) 171, 234
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 7 cut(s) 106, 130, 157, 199, 294, 298, 321
FaiI YATR 7 cut(s) 104, 128, 155, 197, 292, 296, 319
FatI CATG 7 cut(s) 102, 126, 153, 195, 290, 294, 317
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 2 cut(s) 60, 253
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 311
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 4 cut(s) 153, 167, 197, 216
HaeIII GGCC 2 cut(s) 17, 135
HapII CCGG 1 cut(s) 373
HgaI GACGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 7 cut(s) 106, 130, 157, 199, 294, 298, 321
HinfI GANTC 5 cut(s) 108, 141, 177, 221, 439
HpaII CCGG 1 cut(s) 373
Hpy188I TCNGA 5 cut(s) 182, 226, 258, 385, 438
Hpy188III TCNNGA 8 cut(s) 22, 64, 170, 214, 233, 332, 427, 447
Hpy99I CGWCG 3 cut(s) 330, 333, 419
HpyAV CCTTC 5 cut(s) 167, 211, 230, 257, 424
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 2 cut(s) 294, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpySE526I ACGT 1 cut(s) 397
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 7 cut(s) 106, 130, 157, 199, 294, 298, 321
Ksp22I TGATCA 2 cut(s) 60, 253
Kzo9I GATC 7 cut(s) 60, 120, 201, 253, 258, 301, 385
LguI GCTCTTC 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 102
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 397
MalI GATC 7 cut(s) 62, 122, 203, 255, 260, 303, 387
MboI GATC 7 cut(s) 60, 120, 201, 253, 258, 301, 385
MnlI CCTC 5 cut(s) 29, 59, 142, 177, 240
Mph1103I ATGCAT 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 2 cut(s) 146, 374
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 374
NdeII GATC 7 cut(s) 60, 120, 201, 253, 258, 301, 385
NlaIII CATG 7 cut(s) 106, 130, 157, 199, 294, 298, 321
NsiI ATGCAT 1 cut(s) 296
NspI RCATGY 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 2 cut(s) 328, 394
PfeI GAWTC 5 cut(s) 108, 141, 177, 221, 439
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 2 cut(s) 16, 24
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 7 cut(s) 60, 120, 201, 253, 258, 301, 385
Sau96I GGNCC 2 cut(s) 16, 24
ScrFI CCNGG 2 cut(s) 146, 374
SetI ASST 5 cut(s) 169, 211, 241, 343, 400
SinI GGWCC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 144, 372
StyI CCWWGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 400
TaqI TCGA 5 cut(s) 261, 331, 388, 417, 428
TfiI GAWTC 5 cut(s) 108, 141, 177, 221, 439
TseI GCWGC 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 24
XagI CCTNNNNNAGG 2 cut(s) 171, 234
XceI RCATGY 1 cut(s) 321
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XspI CTAG 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.