Rmu_sc0001988.1_g000001

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001988.1
OG0001436
Physical Location & Seq
Reverse (-)
4748 .. 7818
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 536 bp
gtgatgcagatggtaaaggaaatactagaaaagaagagctctacaaggcttctgcaaccctcaaggttccacatcaacaagtgaagattctggaccatccagatcttcaggatggttttggcaaggtgtggaatcacaatttattggcaaagattattgaaaaggaagtcgtaagtcagggcattgacttgatgatcacttttgataactatggagtttcgggacactgtaaccattgtgacgtacattatggagtaaggaagcttttacttgcatcgtcacataggaatgttgaagcctgggaactcgtcagtactaacatattccgcaagtatagtggaccagtggatatatggttctccaatttatattttatgcaatgctcaaatgaaatgttgcattgcttggtaaacgagcagccccgaaagagtttcctcgcgatggcacaacatgcaagccagtgggtttggtttcgcaagctttttgtggcattttcgagctgcacctatgtgaatacgcttagaaagatgaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

177

Amino Acids

20.45

Weight (kDa)

8.79

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-L PF02585 5 - 87 8.9e-07 GlcNAc-PI de-N-acetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 439
AciI CCGC 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 2 cut(s) 245, 315
AfiI CCNNNNNNNGG 1 cut(s) 441
AgsI TTSAA 2 cut(s) 160, 295
AjnI CCWGG 1 cut(s) 298
AleI CACNNNNGTG 1 cut(s) 508
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 4 cut(s) 39, 264, 480, 500
AluI AGCT 4 cut(s) 39, 264, 480, 500
Alw21I GWGCWC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 417, 500
AspS9I GGNCC 2 cut(s) 93, 340
AvaII GGWCC 2 cut(s) 93, 340
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 429, 487
BccI CCATC 4 cut(s) 4, 104, 106, 435
BciT130I CCWGG 1 cut(s) 300
BclI TGATCA 1 cut(s) 194
BfaI CTAG 1 cut(s) 26
BglII AGATCT 1 cut(s) 102
BisI GCNGC 2 cut(s) 418, 501
BlsI GCNGC 2 cut(s) 419, 502
BmcAI AGTACT 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 2 cut(s) 93, 340
BmgT120I GGNCC 2 cut(s) 93, 340
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse1I ACTGG 2 cut(s) 343, 459
Bse3DI GCAATG 2 cut(s) 385, 399
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 2 cut(s) 96, 117
BseLI CCNNNNNNNGG 1 cut(s) 441
BseMI GCAATG 2 cut(s) 385, 399
BseNI ACTGG 2 cut(s) 343, 459
BseXI GCAGC 2 cut(s) 429, 487
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 102, 194
Bsp68I TCGCGA 1 cut(s) 439
BspACI CCGC 1 cut(s) 327
BspFNI CGCG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 385, 399
BsrI ACTGG 2 cut(s) 343, 459
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 2 cut(s) 102, 194
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 456, 478
BstDEI CTNAG 1 cut(s) 520
BstF5I GGATG 2 cut(s) 96, 117
BstFNI CGCG 1 cut(s) 439
BstKTI GATC 2 cut(s) 105, 197
BstMBI GATC 2 cut(s) 102, 194
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 298
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 2 cut(s) 429, 487
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 454
BtsCI GGATG 2 cut(s) 96, 117
BtsIMutI CAGTG 3 cut(s) 225, 350, 466
BtuMI TCGCGA 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 456, 478
Cfr13I GGNCC 2 cut(s) 93, 340
Csp6I GTAC 2 cut(s) 244, 314
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 1 cut(s) 451
CviJI RGCY 8 cut(s) 39, 49, 264, 298, 420, 458, 480, 500
CviKI_1 RGCY 8 cut(s) 39, 49, 264, 298, 420, 458, 480, 500
CviQI GTAC 2 cut(s) 244, 314
DdeI CTNAG 1 cut(s) 520
DpnI GATC 2 cut(s) 104, 196
DpnII GATC 2 cut(s) 102, 194
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 93, 340
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 1 cut(s) 454
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 450
FbaI TGATCA 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 418, 501
FokI GGATG 2 cut(s) 83, 124
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 418, 501
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 418, 501
Hin1II CATG 1 cut(s) 454
HindIII AAGCTT 2 cut(s) 262, 478
HinfI GANTC 2 cut(s) 87, 132
Hpy166II GTNNAC 2 cut(s) 340, 411
Hpy188III TCNNGA 5 cut(s) 91, 100, 109, 221, 438
Hpy8I GTNNAC 2 cut(s) 340, 411
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 7 cut(s) 7, 55, 274, 378, 399, 454, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 1 cut(s) 520
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 194
Kzo9I GATC 2 cut(s) 102, 194
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 8 cut(s) 76, 94, 113, 163, 285, 312, 356, 472
Lsp1109I GCAGC 2 cut(s) 429, 487
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 3 cut(s) 229, 238, 278
MalI GATC 2 cut(s) 104, 196
MboI GATC 2 cut(s) 102, 194
MboII GAAGA 3 cut(s) 46, 96, 97
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 138, 363
MnlI CCTC 2 cut(s) 70, 445
MslI CAYNNNNRTG 2 cut(s) 287, 508
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeII GATC 2 cut(s) 102, 194
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 2 cut(s) 238, 278
NruI TCGCGA 1 cut(s) 439
NspI RCATGY 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 87, 132
PkrI GCNGC 2 cut(s) 419, 502
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 68
PspPI GGNCC 2 cut(s) 93, 340
PsuI RGATCY 1 cut(s) 102
RruI TCGCGA 1 cut(s) 439
RsaI GTAC 2 cut(s) 245, 315
RsaNI GTAC 2 cut(s) 244, 314
RseI CAYNNNNRTG 2 cut(s) 287, 508
SacI GAGCTC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 29
SatI GCNGC 2 cut(s) 418, 501
Sau3AI GATC 2 cut(s) 102, 194
Sau96I GGNCC 2 cut(s) 93, 340
ScaI AGTACT 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 1 cut(s) 41
SetI ASST 8 cut(s) 41, 68, 128, 245, 266, 482, 502, 508
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 2 cut(s) 93, 340
SmiMI CAYNNNNRTG 2 cut(s) 287, 508
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 2 cut(s) 138, 363
SsiI CCGC 1 cut(s) 327
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 496
TasI AATT 2 cut(s) 138, 363
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 2 cut(s) 87, 132
TscAI CASTG 3 cut(s) 232, 350, 466
TseFI GTSAC 2 cut(s) 238, 278
TseI GCWGC 2 cut(s) 417, 500
Tsp45I GTSAC 2 cut(s) 238, 278
TspDTI ATGAA 1 cut(s) 404
TspRI CASTG 3 cut(s) 232, 350, 466
VpaK11BI GGWCC 2 cut(s) 93, 340
XceI RCATGY 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.