Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002085.1

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Reverse (-)

16195 .. 17361

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgcagtccaaacatctcaagaccattgcatttgcgtacaagaagattgatgctctaatgcctgaagaaggcaacagcttaatattgataggactgctaggtgtgaagtgttgcactgagacaatggaagcaccggaagttctacaaaaagcgggagtggacatcatccagttcgcaaaagataatgagtcaatactgtcggaaggtgatagtcctgtctatggaatgggaagacctgctgacaagctccatacactgcaacgtctgaaggaagagggccatgttgtagcaatggttggggctagaacaaatgagactccagctctaaaagaagccgatgtggggattgtaatagggactcgcattagtgaaatggcaagagagggttctgatctcatcatccccgattgcagtctcagtttcttggtcaacattattcggatcggaagatgcattcactacaacattcagaagtacatccaagttgagctcaccatgaatatatcattgcttgtgataatctcaatcactacaatgtccttgggacactgcacagttggggcaatcgaagtagtgtgggcaaatatggttgtgacactatgtgggcttgcgctactggttgagccgccaacagaggagcagatggaaaagccgccggtaaaacaaactgaatctctcattaccaaggcaatgtggagaaacatattacttcaagctttatatcaggctgccatcttggtcacctttcagttcaaatataaagctctcccaggcatcaacgagaagattatggagtccatagttttcagcagttatgttctttgtcaggtatttaatcaagtcagctcaagggagctagagaagaaaaatgtgttcagagatatacgtcgaactcgatggttatgggtggctgtgggagttagcatcacgatgcaggtggcttttgttgagattgcacacaaggttgctggcaatgcaaggttgaattgggcacaatggggtgtctgtcttttaatagcgatggtttcctggccaatggatttggctgggaaatgtgtatggggtgtcatcatgaagattagagtacttggatctgatattgaatccatcagtatgaggtcctctgctgtctcagaatcagcttctaatcgagagctcctagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

388

Amino Acids

43.07

Weight (kDa)

7.0

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	188 - 351	1.7e-36	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	925
Acc36I	ACCTGC	2 cut(s)	244, 925
AciI	CCGC	3 cut(s)	152, 626, 653
AclWI	GGATC	2 cut(s)	449, 1099
AcoI	YGGCCR	1 cut(s)	1031
AcuI	CTGAAG	2 cut(s)	84, 287
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	3 cut(s)	38, 476, 1086
AfiI	CCNNNNNNNGG	3 cut(s)	68, 221, 342
AgsI	TTSAA	4 cut(s)	713, 754, 985, 1103
AjnI	CCWGG	2 cut(s)	769, 1028
Alw21I	GWGCWC	2 cut(s)	492, 1158
Alw26I	GTCTC	4 cut(s)	113, 308, 419, 1135
AlwI	GGATC	2 cut(s)	449, 1099
AoxI	GGCC	2 cut(s)	277, 1031
ApeKI	GCWGC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	2 cut(s)	277, 1119
AsuHPI	GGTGA	3 cut(s)	218, 484, 733
AvaII	GGWCC	1 cut(s)	1119
BaeGI	GKGCMC	1 cut(s)	994
BalI	TGGCCA	1 cut(s)	1033
BanII	GRGCYC	2 cut(s)	492, 1158
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	2 cut(s)	492, 1158
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	5 cut(s)	637, 740, 891, 1015, 1115
BciT130I	CCWGG	2 cut(s)	771, 1030
BcoDI	GTCTC	4 cut(s)	113, 308, 419, 1135
BfaI	CTAG	4 cut(s)	98, 303, 857, 1160
BfuAI	ACCTGC	2 cut(s)	244, 925
BisI	GCNGC	3 cut(s)	626, 653, 729
BlsI	GCNGC	3 cut(s)	627, 654, 730
BmcAI	AGTACT	1 cut(s)	1086
Bme1390I	CCNGG	2 cut(s)	771, 1030
Bme18I	GGWCC	1 cut(s)	1119
BmgT120I	GGNCC	2 cut(s)	277, 1119
BmrFI	CCNGG	2 cut(s)	771, 1030
BmsI	GCATC	5 cut(s)	40, 440, 783, 921, 933
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	832
BsaJI	CCNNGG	3 cut(s)	540, 684, 769
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 221, 342
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	169, 621
Bse3DI	GCAATG	5 cut(s)	24, 297, 506, 696, 979
BseBI	CCWGG	2 cut(s)	771, 1030
BseDI	CCNNGG	3 cut(s)	540, 684, 769
BseGI	GGATG	3 cut(s)	165, 399, 477
BseLI	CCNNNNNNNGG	3 cut(s)	68, 221, 342
BseMI	GCAATG	5 cut(s)	24, 297, 506, 696, 979
BseMII	CTCAG	3 cut(s)	108, 430, 1146
BseNI	ACTGG	2 cut(s)	169, 621
BseRI	GAGGAG	1 cut(s)	650
BseSI	GKGCMC	1 cut(s)	994
BseXI	GCAGC	1 cut(s)	715
BseYI	CCCAGC	1 cut(s)	1046
BsgI	GTGCAG	1 cut(s)	535
BshFI	GGCC	2 cut(s)	279, 1033
BsiHKAI	GWGCWC	2 cut(s)	492, 1158
BsiSI	CCGG	2 cut(s)	134, 656
BslFI	GGGAC	2 cut(s)	370, 558
BslI	CCNNNNNNNGG	3 cut(s)	68, 221, 342
BsmAI	GTCTC	4 cut(s)	113, 308, 419, 1135
BsmFI	GGGAC	2 cut(s)	370, 558
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	279, 1033
Bsp1286I	GDGCHC	3 cut(s)	492, 994, 1158
Bsp143I	GATC	3 cut(s)	391, 441, 1091
BspACI	CCGC	3 cut(s)	152, 626, 653
BspANI	GGCC	2 cut(s)	279, 1033
BspCNI	CTCAG	3 cut(s)	109, 429, 1145
BspHI	TCATGA	1 cut(s)	1071
BspMI	ACCTGC	2 cut(s)	244, 925
BspPI	GGATC	2 cut(s)	449, 1099
BsrDI	GCAATG	5 cut(s)	24, 297, 506, 696, 979
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	169, 621
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	540, 684, 769
BssMI	GATC	3 cut(s)	391, 441, 1091
BssT1I	CCWWGG	2 cut(s)	540, 684
Bst2UI	CCWGG	2 cut(s)	771, 1030
Bst4CI	ACNGT	2 cut(s)	198, 556
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	609, 970
BstDEI	CTNAG	3 cut(s)	117, 416, 1132
BstEII	GGTNACC	1 cut(s)	739
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	165, 399, 477
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	3 cut(s)	394, 444, 1094
BstMAI	GTCTC	4 cut(s)	113, 308, 419, 1135
BstMBI	GATC	3 cut(s)	391, 441, 1091
BstMWI	GCNNNNNNNGC	1 cut(s)	974
BstNI	CCWGG	2 cut(s)	771, 1030
BstPI	GGTNACC	1 cut(s)	739
BstSCI	CCNGG	2 cut(s)	769, 1028
BstSLI	GKGCMC	1 cut(s)	994
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	1091
BstYI	RGATCY	1 cut(s)	1091
BsuRI	GGCC	2 cut(s)	279, 1033
BtgZI	GCGATG	1 cut(s)	1034
BtsCI	GGATG	3 cut(s)	165, 399, 477
BtsI	GCAGTG	2 cut(s)	254, 547
BtsIMutI	CAGTG	3 cut(s)	114, 254, 547
BveI	ACCTGC	2 cut(s)	244, 925
Cac8I	GCNNGC	2 cut(s)	609, 970
CciI	TCATGA	1 cut(s)	1071
CfoI	GCGC	1 cut(s)	613
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	2 cut(s)	277, 1119
Csp6I	GTAC	3 cut(s)	37, 475, 1085
CviAII	CATG	3 cut(s)	281, 496, 1072
CviQI	GTAC	3 cut(s)	37, 475, 1085
DdeI	CTNAG	3 cut(s)	117, 416, 1132
DpnI	GATC	3 cut(s)	393, 443, 1093
DpnII	GATC	3 cut(s)	391, 441, 1091
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	1031
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	2 cut(s)	490, 1156
Eco130I	CCWWGG	2 cut(s)	540, 684
Eco24I	GRGCYC	2 cut(s)	492, 1158
Eco47I	GGWCC	1 cut(s)	1119
Eco53kI	GAGCTC	2 cut(s)	490, 1156
Eco57I	CTGAAG	2 cut(s)	84, 287
Eco91I	GGTNACC	1 cut(s)	739
EcoICRI	GAGCTC	2 cut(s)	490, 1156
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	1119
EcoO65I	GGTNACC	1 cut(s)	739
EcoRII	CCWGG	2 cut(s)	769, 1028
EcoT14I	CCWWGG	2 cut(s)	540, 684
EcoT22I	ATGCAT	1 cut(s)	455
EcoT38I	GRGCYC	2 cut(s)	492, 1158
ErhI	CCWWGG	2 cut(s)	540, 684
FaeI	CATG	3 cut(s)	284, 499, 1075
FaqI	GGGAC	2 cut(s)	370, 558
FatI	CATG	3 cut(s)	280, 495, 1071
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	626, 653, 729
FokI	GGATG	3 cut(s)	152, 386, 464
FriOI	GRGCYC	2 cut(s)	492, 1158
Fsp4HI	GCNGC	3 cut(s)	626, 653, 729
FspBI	CTAG	4 cut(s)	98, 303, 857, 1160
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	3 cut(s)	626, 653, 729
GsaI	CCCAGC	1 cut(s)	1050
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	279, 1033
HapII	CCGG	2 cut(s)	134, 656
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	3 cut(s)	284, 499, 1075
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	7 cut(s)	188, 316, 358, 671, 794, 1103, 1136
HpaII	CCGG	2 cut(s)	134, 656
HphI	GGTGA	3 cut(s)	218, 484, 733
Hpy166II	GTNNAC	2 cut(s)	160, 430
Hpy188I	TCNGA	9 cut(s)	202, 267, 391, 441, 446, 471, 878, 1096, 1135
Hpy188III	TCNNGA	4 cut(s)	19, 928, 1072, 1151
Hpy8I	GTNNAC	2 cut(s)	160, 430
Hpy99I	CGWCG	1 cut(s)	891
HpyAV	CCTTC	3 cut(s)	62, 197, 262
HpyCH4III	ACNGT	2 cut(s)	198, 556
HpyCH4IV	ACGT	2 cut(s)	262, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	974
HpyF3I	CTNAG	3 cut(s)	117, 416, 1132
HpySE526I	ACGT	2 cut(s)	262, 886
Hsp92II	CATG	3 cut(s)	284, 499, 1075
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	3 cut(s)	391, 441, 1091
LmnI	GCTCC	4 cut(s)	252, 637, 853, 1161
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	5 cut(s)	40, 440, 783, 921, 933
MaeI	CTAG	4 cut(s)	98, 303, 857, 1160
MaeII	ACGT	2 cut(s)	262, 886
MaeIII	GTNAC	2 cut(s)	592, 739
MalI	GATC	3 cut(s)	393, 443, 1093
MboI	GATC	3 cut(s)	391, 441, 1091
MboII	GAAGA	8 cut(s)	55, 77, 243, 284, 459, 796, 874, 1087
MflI	RGATCY	1 cut(s)	1091
MhlI	GDGCHC	3 cut(s)	492, 994, 1158
MlsI	TGGCCA	1 cut(s)	1033
MluCI	AATT	1 cut(s)	985
MluNI	TGGCCA	1 cut(s)	1033
MlyI	GAGTC	4 cut(s)	197, 310, 352, 803
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	268, 376, 628, 1110, 1132
Mox20I	TGGCCA	1 cut(s)	1033
Mph1103I	ATGCAT	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	1033
MseI	TTAA	3 cut(s)	80, 834, 1013
MslI	CAYNNNNRTG	3 cut(s)	533, 929, 1112
Msp20I	TGGCCA	1 cut(s)	1033
MspI	CCGG	2 cut(s)	134, 656
MspR9I	CCNGG	2 cut(s)	771, 1030
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	771, 1030
MwoI	GCNNNNNNNGC	1 cut(s)	974
NdeII	GATC	3 cut(s)	391, 441, 1091
NlaIII	CATG	3 cut(s)	284, 499, 1075
NmuCI	GTSAC	2 cut(s)	592, 739
NsiI	ATGCAT	1 cut(s)	455
PagI	TCATGA	1 cut(s)	1071
PaqCI	CACCTGC	1 cut(s)	925
PcsI	WCGNNNNNNNCGW	1 cut(s)	892
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	671, 1103, 1136
PkrI	GCNGC	3 cut(s)	627, 654, 730
PleI	GAGTC	4 cut(s)	196, 310, 352, 802
PpsI	GAGTC	4 cut(s)	196, 310, 352, 802
PpuMI	RGGWCCY	1 cut(s)	1119
Psp124BI	GAGCTC	2 cut(s)	492, 1158
Psp5II	RGGWCCY	1 cut(s)	1119
Psp6I	CCWGG	2 cut(s)	769, 1028
PspEI	GGTNACC	1 cut(s)	739
PspFI	CCCAGC	1 cut(s)	1046
PspGI	CCWGG	2 cut(s)	769, 1028
PspPI	GGNCC	2 cut(s)	277, 1119
PspPPI	RGGWCCY	1 cut(s)	1119
PsuI	RGATCY	1 cut(s)	1091
RsaI	GTAC	3 cut(s)	38, 476, 1086
RsaNI	GTAC	3 cut(s)	37, 475, 1085
RseI	CAYNNNNRTG	3 cut(s)	533, 929, 1112
SacI	GAGCTC	2 cut(s)	492, 1158
SaqAI	TTAA	3 cut(s)	80, 834, 1013
SatI	GCNGC	3 cut(s)	626, 653, 729
Sau3AI	GATC	3 cut(s)	391, 441, 1091
Sau96I	GGNCC	2 cut(s)	277, 1119
ScaI	AGTACT	1 cut(s)	1086
SchI	GAGTC	4 cut(s)	197, 310, 352, 803
ScrFI	CCNGG	2 cut(s)	771, 1030
SduI	GDGCHC	3 cut(s)	492, 994, 1158
SfaNI	GCATC	5 cut(s)	40, 440, 783, 921, 933
SinI	GGWCC	1 cut(s)	1119
SmiMI	CAYNNNNRTG	3 cut(s)	533, 929, 1112
SmlI	CTYRAG	2 cut(s)	17, 847
SmoI	CTYRAG	2 cut(s)	17, 847
Sse9I	AATT	1 cut(s)	985
SsiI	CCGC	3 cut(s)	152, 626, 653
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	4 cut(s)	98, 303, 857, 1160
SstI	GAGCTC	2 cut(s)	492, 1158
StyD4I	CCNGG	2 cut(s)	769, 1028
StyI	CCWWGG	2 cut(s)	540, 684
TaaI	ACNGT	2 cut(s)	198, 556
TaiI	ACGT	2 cut(s)	265, 889
TaqI	TCGA	4 cut(s)	567, 889, 895, 1150
TasI	AATT	1 cut(s)	985
TatI	WGTACW	2 cut(s)	474, 1084
TauI	GCSGC	2 cut(s)	628, 655
TfiI	GAWTC	3 cut(s)	671, 1103, 1136
Tru1I	TTAA	3 cut(s)	80, 834, 1013
Tru9I	TTAA	3 cut(s)	80, 834, 1013
TscAI	CASTG	3 cut(s)	121, 261, 554
TseFI	GTSAC	2 cut(s)	592, 739
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	2 cut(s)	592, 739
TspDTI	ATGAA	2 cut(s)	512, 1088
TspRI	CASTG	3 cut(s)	121, 261, 554
VpaK11BI	GGWCC	1 cut(s)	1119
XagI	CCTNNNNNAGG	1 cut(s)	66
XspI	CTAG	4 cut(s)	98, 303, 857, 1160
ZrmI	AGTACT	1 cut(s)	1086
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.