Rmu_sc0002284.1_g000016

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002284.1
OG0002128
Physical Location & Seq
Reverse (-)
64596 .. 69275
4680 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
atgccaataatccggtcatcaggtgagcccatcatcataagtgtgagcccatttttgaattacttggaaaatggagtgagccaagaggaggactgcgaggaattggaggagtctgatgatgatgacgtggcggaaaatgaagaagatgaagatgaggaggaggaggaggaggaggaagaagaagaaaatgtagaagaagaagaggaaggtggaggcaagaacgaaatcgaggatgggctacggaagcagaggaatacgagaatgacaaagaggatgaagaggatgaagaggatgaagaagaagatggtgaagatgaggaggaagaggatgatgcccaggagatatgaagacgtctttgggaaaaagaaactttctacccacgaaaagcagcaactgaaacttaagtccgaaatagagcagagggaaaaggcaaatatggaccccaaaacttggaccatgcggggaaaggtaactgcaactaaaaggccaccgaatagtgcattagaagttgttctagattttgaacacaatgttagacgtgcccctccaatcacagaggaggttacagtagcagttaaggatatgatccggaaaaggatcgagcagaccttgaagctccagaatcaattgggtctgggaggtggagtcggacttagcgacgaagagaacattaaggagcgagcggagtccacgaactcagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

234

Amino Acids

27.31

Weight (kDa)

4.97

Isoelectric Point (pI)

87.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 34 - 202 3.1e-26 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 354
AccB7I CCANNNNNTGG 1 cut(s) 450
AccBSI CCGCTC 1 cut(s) 683
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 3 cut(s) 131, 460, 683
AclWI GGATC 2 cut(s) 580, 605
AcyI GRCGYC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 88, 450
AflII CTTAAG 1 cut(s) 401
AgsI TTSAA 3 cut(s) 58, 524, 613
AjiI CACGTC 2 cut(s) 127, 539
AjnI CCWGG 1 cut(s) 335
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 1 cut(s) 616
AluI AGCT 1 cut(s) 616
AlwI GGATC 2 cut(s) 580, 605
AlwNI CAGNNNCTG 1 cut(s) 394
Aor13HI TCCGGA 1 cut(s) 588
AoxI GGCC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 388
Asp700I GAANNNNTTC 1 cut(s) 510
AspS9I GGNCC 2 cut(s) 439, 453
AsuHPI GGTGA 2 cut(s) 35, 319
AvaII GGWCC 2 cut(s) 439, 453
BaeGI GKGCMC 1 cut(s) 544
BanII GRGCYC 2 cut(s) 30, 50
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 400
BccI CCATC 3 cut(s) 38, 227, 298
BciT130I CCWGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 515
BfrI CTTAAG 1 cut(s) 401
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 2 cut(s) 439, 453
BmgBI CACGTC 2 cut(s) 127, 539
BmgT120I GGNCC 2 cut(s) 439, 453
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 2 cut(s) 12, 588
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 450
BseAI TCCGGA 1 cut(s) 588
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 5 cut(s) 238, 279, 288, 297, 333
BseLI CCNNNNNNNGG 2 cut(s) 88, 450
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 1 cut(s) 400
BshFI GGCC 1 cut(s) 487
BsiSI CCGG 2 cut(s) 13, 589
BslI CCNNNNNNNGG 2 cut(s) 88, 450
BsnI GGCC 1 cut(s) 487
Bsp1286I GDGCHC 3 cut(s) 30, 50, 544
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 2 cut(s) 585, 597
BspACI CCGC 3 cut(s) 131, 460, 683
BspANI GGCC 1 cut(s) 487
BspEI TCCGGA 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 2 cut(s) 580, 605
BspTI CTTAAG 1 cut(s) 401
BsrBI CCGCTC 1 cut(s) 683
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 585, 597
BssNI GRCGYC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 5 cut(s) 195, 272, 281, 317, 657
BstACI GRCGYC 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 2 cut(s) 653, 697
BstF5I GGATG 5 cut(s) 238, 279, 288, 297, 333
BstKTI GATC 2 cut(s) 588, 600
BstMBI GATC 2 cut(s) 585, 597
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 487
BtrI CACGTC 2 cut(s) 127, 539
BtsCI GGATG 5 cut(s) 238, 279, 288, 297, 333
Cac8I GCNNGC 1 cut(s) 681
CaiI CAGNNNCTG 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 439, 453
CviAII CATG 1 cut(s) 457
CviJI RGCY 6 cut(s) 28, 48, 81, 238, 487, 616
CviKI_1 RGCY 6 cut(s) 28, 48, 81, 238, 487, 616
DdeI CTNAG 2 cut(s) 653, 697
DpnI GATC 2 cut(s) 587, 599
DpnII GATC 2 cut(s) 585, 597
Eam1104I CTCTTC 5 cut(s) 195, 272, 281, 317, 657
EarI CTCTTC 5 cut(s) 195, 272, 281, 317, 657
EciI GGCGGA 1 cut(s) 146
Eco24I GRGCYC 2 cut(s) 30, 50
Eco47I GGWCC 2 cut(s) 439, 453
EcoRII CCWGG 1 cut(s) 335
EcoT38I GRGCYC 2 cut(s) 30, 50
FaeI CATG 1 cut(s) 460
FaiI YATR 5 cut(s) 38, 345, 437, 458, 584
FatI CATG 1 cut(s) 456
FauI CCCGC 1 cut(s) 453
Fnu4HI GCNGC 1 cut(s) 389
FokI GGATG 5 cut(s) 245, 286, 295, 304, 340
FriOI GRGCYC 2 cut(s) 30, 50
Fsp4HI GCNGC 1 cut(s) 389
FspBI CTAG 1 cut(s) 515
GluI GCNGC 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 1 cut(s) 487
HapII CCGG 2 cut(s) 13, 589
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 1 cut(s) 460
HinfI GANTC 4 cut(s) 110, 622, 645, 686
HpaII CCGG 2 cut(s) 13, 589
HphI GGTGA 2 cut(s) 35, 319
Hpy166II GTNNAC 1 cut(s) 690
Hpy188I TCNGA 4 cut(s) 115, 409, 650, 700
Hpy188III TCNNGA 3 cut(s) 515, 589, 619
Hpy8I GTNNAC 1 cut(s) 690
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 3 cut(s) 126, 351, 538
HpyCH4V TGCA 2 cut(s) 476, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 2 cut(s) 653, 697
HpySE526I ACGT 3 cut(s) 126, 351, 538
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 1 cut(s) 460
Kpn2I TCCGGA 1 cut(s) 588
Kzo9I GATC 2 cut(s) 585, 597
LmnI GCTCC 2 cut(s) 621, 676
LpnPI CCDG 7 cut(s) 6, 26, 322, 349, 602, 620, 632
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 515
MaeII ACGT 3 cut(s) 126, 351, 538
MaeIII GTNAC 2 cut(s) 469, 562
MalI GATC 2 cut(s) 587, 599
MbiI CCGCTC 1 cut(s) 683
MboI GATC 2 cut(s) 585, 597
MfeI CAATTG 1 cut(s) 626
MhlI GDGCHC 3 cut(s) 30, 50, 544
MluCI AATT 3 cut(s) 58, 101, 626
MlyI GAGTC 3 cut(s) 119, 654, 695
MmeI TCCRAC 1 cut(s) 628
MroI TCCGGA 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 3 cut(s) 402, 576, 672
MslI CAYNNNNRTG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 2 cut(s) 13, 589
MspR9I CCNGG 1 cut(s) 337
MunI CAATTG 1 cut(s) 626
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 2 cut(s) 585, 597
NlaIII CATG 1 cut(s) 460
NlaIV GGNNCC 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 1 cut(s) 622
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 1 cut(s) 390
PleI GAGTC 3 cut(s) 118, 653, 694
PpsI GAGTC 3 cut(s) 118, 653, 694
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 2 cut(s) 439, 453
PstNI CAGNNNCTG 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 3 cut(s) 402, 576, 672
SatI GCNGC 1 cut(s) 389
Sau3AI GATC 2 cut(s) 585, 597
Sau96I GGNCC 2 cut(s) 439, 453
SchI GAGTC 3 cut(s) 119, 654, 695
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 3 cut(s) 30, 50, 544
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 2 cut(s) 439, 453
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 3 cut(s) 58, 101, 626
SsiI CCGC 3 cut(s) 131, 460, 683
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 3 cut(s) 129, 354, 541
TaqI TCGA 2 cut(s) 228, 600
TasI AATT 3 cut(s) 58, 101, 626
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 3 cut(s) 402, 576, 672
Tru9I TTAA 3 cut(s) 402, 576, 672
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 6 cut(s) 153, 162, 290, 299, 308, 360
TspGWI ACGGA 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 450
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 439, 453
XbaI TCTAGA 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 1 cut(s) 515
ZraI GACGTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.