Rmu_sc0003778.1_g000028

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003778.1
OG0002177
Physical Location & Seq
Forward (+)
69898 .. 70191
294 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
atggtccaggtcgtcgtgctccggtgcatcatttggtacactctgttactcttcctcttcgagtaccgcgacgccaagctgctaataatagagcagttcccggagaccggcacttccatcgtctcctttaaggtcgactccgacgtcatgttcctcgacggccacgacttcatcaaaaccaaggccaagatcggcaacgatggcaagctccacgtcaaggtgaggaagtccaacgcgtccagacggtcgctctcggcaatgacgcctcgcacgtccaacctcacaagagcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

97

Amino Acids

11.09

Weight (kDa)

9.84

Isoelectric Point (pI)

17.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 1 - 87 8.1e-13 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AatII GACGTC 1 cut(s) 147
AccI GTMKAC 1 cut(s) 135
AccII CGCG 2 cut(s) 69, 236
AciI CCGC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 160
AcyI GRCGYC 3 cut(s) 72, 144, 263
AfaI GTAC 2 cut(s) 38, 65
AfiI CCNNNNNNNGG 2 cut(s) 107, 217
AflIII ACRYGT 1 cut(s) 234
AjiI CACGTC 2 cut(s) 214, 273
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 79, 208
AluI AGCT 2 cut(s) 79, 208
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 98, 127
AoxI GGCC 2 cut(s) 160, 183
ApeKI GCWGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 125, 194
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 1 cut(s) 8
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 98, 127
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 8, 101
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 2 cut(s) 214, 273
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 8, 101
BmsI GCATC 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 3 cut(s) 72, 144, 263
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 217
Bse118I RCCGGY 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 107, 217
BseMI GCAATG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 69, 236
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 2 cut(s) 162, 185
BsiEI CGRYCG 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 3 cut(s) 22, 101, 108
BslI CCNNNNNNNGG 2 cut(s) 107, 217
BsmAI GTCTC 2 cut(s) 98, 127
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 2 cut(s) 162, 185
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 162, 185
BspFNI CGCG 2 cut(s) 69, 236
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 1 cut(s) 189
BssNI GRCGYC 3 cut(s) 72, 144, 263
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 2 cut(s) 56, 62
BstACI GRCGYC 3 cut(s) 72, 144, 263
BstC8I GCNNGC 1 cut(s) 206
BstFNI CGCG 2 cut(s) 69, 236
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 2 cut(s) 98, 127
BstMBI GATC 1 cut(s) 189
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 6, 99
BstUI CGCG 2 cut(s) 69, 236
BstV1I GCAGC 1 cut(s) 66
BsuRI GGCC 2 cut(s) 162, 185
BtrI CACGTC 2 cut(s) 214, 273
Cac8I GCNNGC 1 cut(s) 206
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 3 cut(s) 80, 225, 271
Csp6I GTAC 2 cut(s) 37, 64
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 79, 162, 185, 208
CviKI_1 RGCY 4 cut(s) 79, 162, 185, 208
CviQI GTAC 2 cut(s) 37, 64
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 56, 62
EarI CTCTTC 2 cut(s) 56, 62
Eco130I CCWWGG 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 1 cut(s) 151
FaiI YATR 1 cut(s) 149
FatI CATG 1 cut(s) 147
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 2 cut(s) 162, 185
HapII CCGG 3 cut(s) 22, 101, 108
HgaI GACGC 3 cut(s) 80, 225, 271
Hin1I GRCGYC 3 cut(s) 72, 144, 263
Hin1II CATG 1 cut(s) 151
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 137
HpaII CCGG 3 cut(s) 22, 101, 108
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 39, 136
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 240
Hpy8I GTNNAC 2 cut(s) 39, 136
Hpy99I CGWCG 4 cut(s) 17, 74, 146, 161
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4IV ACGT 3 cut(s) 144, 213, 272
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpySE526I ACGT 3 cut(s) 144, 213, 272
Hsp92I GRCGYC 3 cut(s) 72, 144, 263
Hsp92II CATG 1 cut(s) 151
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 24, 213
LpnPI CCDG 5 cut(s) 20, 35, 114, 121, 253
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 36
MaeII ACGT 3 cut(s) 144, 213, 272
MaeIII GTNAC 1 cut(s) 45
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 2 cut(s) 43, 49
MhlI GDGCHC 1 cut(s) 21
MluI ACGCGT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 165, 255
MnlI CCTC 5 cut(s) 65, 164, 216, 276, 290
MseI TTAA 1 cut(s) 129
MspI CCGG 3 cut(s) 22, 101, 108
MspR9I CCNGG 2 cut(s) 8, 101
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 2 cut(s) 69, 236
MwoI GCNNNNNNNGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 101
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 151
NmeAIII GCCGAG 1 cut(s) 233
PcsI WCGNNNNNNNCGW 4 cut(s) 66, 141, 162, 269
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 38, 65
RsaNI GTAC 2 cut(s) 37, 64
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 8, 101
SduI GDGCHC 1 cut(s) 21
SetI ASST 9 cut(s) 12, 81, 135, 147, 210, 216, 222, 275, 282
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 1 cut(s) 4
SsiI CCGC 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 6, 99
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 246
TaiI ACGT 3 cut(s) 147, 216, 275
TaqI TCGA 3 cut(s) 60, 135, 156
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 135
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.