Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003835.1

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

37448 .. 40070

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggaggacattgaatgccccagatccactttctctctccacctcgccttcaaactagggccaattgaagagatgcagaagacgaaggtgtccgagagcggaggccaccatgctgttctgcgcagacgaggcaacgctgtgcttcgatctgaagatctctgtaggcacactggtactcgtctattcgaagtggtaagattccttccagagtatgggggtgtaataccaaagagatcagaagggggcacatttcaggttgaatcaaaagtagtctgtcgagctcctagtcaatcaagacatcggttacatatagatgatgaatctgatatcccatcttcaccaatgcaatatcatgaccagtttgataatgttggttctacgccaagaaattcaccagttggtcatgaccatacacttctgcatagagaaatacatgaacatggtaagccaagcatgcacacccttgagtgggaaaaaaatttggttgccgaggatgatgaccttctgagctatttggctatgaggattctgttaaaggtgggaacaactgtgaagctttgtgaaaatggaggagaagctccagatgtaattcgcatagatctactcaaccaagggaaacatgaatatactaatggactgttagtgagtgactttggtgttgaaattaacatgcagatgccagaaatggatggatttgaggcaacaagggagataaggaaaggggagaaaactcaccatgtccgcattccgatcattgcattaacagctcatacaccaggagaggaaataagaaggatgttggaggctggcatcgatgattatttgagcaaacccttagaaaagggtcgtctacttgaaataatgggtagactggtggggaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

294

Amino Acids

33.23

Weight (kDa)

6.1

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	161 - 287	3.6e-14	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
Acc16I	TGCGCA	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	2 cut(s)	850, 868
AciI	CCGC	2 cut(s)	99, 742
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	388, 478
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	3 cut(s)	212, 468, 469
AgsI	TTSAA	6 cut(s)	14, 52, 68, 260, 662, 857
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	5 cut(s)	281, 510, 556, 578, 767
AluI	AGCT	5 cut(s)	281, 510, 556, 578, 767
Alw21I	GWGCWC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	59, 103
ApoI	RAATTY	2 cut(s)	388, 478
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	3 cut(s)	330, 384, 725
AsuII	TTCGAA	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	2 cut(s)	186, 218
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	283
BccI	CCATC	2 cut(s)	340, 683
BciT130I	CCWGG	1 cut(s)	777
BfaI	CTAG	2 cut(s)	56, 285
BfmI	CTRYAG	1 cut(s)	160
BglII	AGATCT	2 cut(s)	154, 598
Bme1390I	CCNGG	1 cut(s)	777
BmgT120I	GGNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	3 cut(s)	63, 666, 819
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	485
Bsa29I	ATCGAT	1 cut(s)	813
BsaJI	CCNNGG	2 cut(s)	489, 610
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 468, 469
Bse1I	ACTGG	4 cut(s)	175, 358, 395, 876
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	777
BseCI	ATCGAT	1 cut(s)	813
BseDI	CCNNGG	2 cut(s)	489, 610
BseGI	GGATG	3 cut(s)	499, 694, 801
BseLI	CCNNNNNNNGG	3 cut(s)	212, 468, 469
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	4 cut(s)	175, 358, 395, 876
BseRI	GAGGAG	1 cut(s)	585
BseSI	GKGCMC	1 cut(s)	248
BshFI	GGCC	2 cut(s)	61, 105
BshVI	ATCGAT	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	212, 468, 469
BsmI	GAATGC	2 cut(s)	20, 744
BsnI	GGCC	2 cut(s)	61, 105
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	248, 283
Bsp143I	GATC	6 cut(s)	23, 146, 154, 233, 598, 750
BspACI	CCGC	2 cut(s)	99, 742
BspANI	GGCC	2 cut(s)	61, 105
BspCNI	CTCAG	1 cut(s)	498
BspDI	ATCGAT	1 cut(s)	813
BspHI	TCATGA	2 cut(s)	352, 403
BspPI	GGATC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	4 cut(s)	175, 358, 395, 876
BssECI	CCNNGG	2 cut(s)	489, 610
BssMI	GATC	6 cut(s)	23, 146, 154, 233, 598, 750
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	2 cut(s)	550, 639
Bst6I	CTCTTC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	455, 808
BstDEI	CTNAG	2 cut(s)	506, 835
BstF5I	GGATG	3 cut(s)	499, 694, 801
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	6 cut(s)	26, 149, 157, 236, 601, 753
BstMBI	GATC	6 cut(s)	23, 146, 154, 233, 598, 750
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 454, 764
BstNI	CCWGG	1 cut(s)	777
BstNSI	RCATGY	2 cut(s)	457, 673
BstSCI	CCNGG	1 cut(s)	775
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	3 cut(s)	23, 154, 598
BstYI	RGATCY	3 cut(s)	23, 154, 598
Bsu15I	ATCGAT	1 cut(s)	813
BsuRI	GGCC	2 cut(s)	61, 105
BsuTUI	ATCGAT	1 cut(s)	813
BtsCI	GGATG	3 cut(s)	499, 694, 801
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	455, 808
CciI	TCATGA	2 cut(s)	352, 403
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	59
ClaI	ATCGAT	1 cut(s)	813
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	9 cut(s)	110, 353, 404, 434, 440, 454, 620, 670, 737
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	506, 835
DpnI	GATC	6 cut(s)	25, 148, 156, 235, 600, 752
DpnII	GATC	6 cut(s)	23, 146, 154, 233, 598, 750
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	775
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	9 cut(s)	113, 356, 407, 437, 443, 457, 623, 673, 740
FatI	CATG	9 cut(s)	109, 352, 403, 433, 439, 453, 619, 669, 736
FblI	GTMKAC	2 cut(s)	850, 868
FokI	GGATG	3 cut(s)	506, 701, 808
FriOI	GRGCYC	1 cut(s)	283
FspBI	CTAG	2 cut(s)	56, 285
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	61, 105
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	9 cut(s)	113, 356, 407, 437, 443, 457, 623, 673, 740
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	4 cut(s)	198, 260, 320, 526
HphI	GGTGA	3 cut(s)	330, 384, 725
Hpy166II	GTNNAC	2 cut(s)	851, 869
Hpy188I	TCNGA	6 cut(s)	94, 151, 238, 325, 507, 750
Hpy188III	TCNNGA	5 cut(s)	206, 294, 353, 404, 581
Hpy8I	GTNNAC	2 cut(s)	851, 869
HpyAV	CCTTC	6 cut(s)	58, 79, 212, 233, 512, 786
HpyCH4III	ACNGT	2 cut(s)	550, 639
HpyCH4V	TGCA	6 cut(s)	76, 346, 421, 457, 673, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 454, 764
HpyF3I	CTNAG	2 cut(s)	506, 835
Hsp92II	CATG	9 cut(s)	113, 356, 407, 437, 443, 457, 623, 673, 740
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	23, 146, 154, 233, 598, 750
LmnI	GCTCC	2 cut(s)	286, 583
LweI	GCATC	3 cut(s)	63, 666, 819
MaeI	CTAG	2 cut(s)	56, 285
MaeIII	GTNAC	2 cut(s)	303, 647
MalI	GATC	6 cut(s)	25, 148, 156, 235, 600, 752
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	6 cut(s)	23, 146, 154, 233, 598, 750
MboII	GAAGA	4 cut(s)	80, 91, 164, 327
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	3 cut(s)	23, 154, 598
MhlI	GDGCHC	2 cut(s)	248, 283
MluCI	AATT	5 cut(s)	63, 388, 478, 588, 663
MmeI	TCCRAC	1 cut(s)	780
MnlI	CCTC	9 cut(s)	53, 95, 122, 484, 516, 563, 691, 775, 796
MseI	TTAA	3 cut(s)	533, 666, 761
MslI	CAYNNNNRTG	3 cut(s)	312, 438, 674
MspR9I	CCNGG	1 cut(s)	777
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	2 cut(s)	20, 744
MvaI	CCWGG	1 cut(s)	777
MwoI	GCNNNNNNNGC	3 cut(s)	129, 454, 764
NdeII	GATC	6 cut(s)	23, 146, 154, 233, 598, 750
NlaIII	CATG	9 cut(s)	113, 356, 407, 437, 443, 457, 623, 673, 740
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	647
NsbI	TGCGCA	1 cut(s)	122
NspI	RCATGY	2 cut(s)	457, 673
NspV	TTCGAA	1 cut(s)	186
PaeI	GCATGC	1 cut(s)	457
PagI	TCATGA	2 cut(s)	352, 403
PctI	GAATGC	2 cut(s)	20, 744
PfeI	GAWTC	4 cut(s)	198, 260, 320, 526
PflMI	CCANNNNNTGG	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	3 cut(s)	23, 154, 598
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	3 cut(s)	312, 438, 674
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	533, 666, 761
Sau3AI	GATC	6 cut(s)	23, 146, 154, 233, 598, 750
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	777
SduI	GDGCHC	2 cut(s)	248, 283
SfaNI	GCATC	3 cut(s)	63, 666, 819
SfcI	CTRYAG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	186
SmiMI	CAYNNNNRTG	3 cut(s)	312, 438, 674
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SphI	GCATGC	1 cut(s)	457
Sse9I	AATT	5 cut(s)	63, 388, 478, 588, 663
SsiI	CCGC	2 cut(s)	99, 742
SspMI	CTAG	2 cut(s)	56, 285
SstI	GAGCTC	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	775
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	550, 639
TaqI	TCGA	4 cut(s)	145, 186, 277, 813
TasI	AATT	5 cut(s)	63, 388, 478, 588, 663
TfiI	GAWTC	4 cut(s)	198, 260, 320, 526
Tru1I	TTAA	3 cut(s)	533, 666, 761
Tru9I	TTAA	3 cut(s)	533, 666, 761
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	333, 450, 636
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	388, 478
XceI	RCATGY	2 cut(s)	457, 673
XmiI	GTMKAC	2 cut(s)	850, 868
XspI	CTAG	2 cut(s)	56, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.