Rmu_sc0004702.1_g000006

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004702.1
OG0002979
Physical Location & Seq
Reverse (-)
27319 .. 33524
6206 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
atggaaatagaggtggacgagaaagccgctggacctgagttgttctccgacggacgccacggctgggaaatcgagactcgcaaccgctccattctcaactcctccacccacgaactgtgggagaagaagcttgagactcgtcccatgccggagatgatatttggggacagttgtctggttctgaagcatgtgaaaaagtggttgccaccggttgaagtcccagctgctgctctctggaagttcagatgtaaaccctctgagcaagtaatactggactatgactatacattcacaacacctggtgcgtcgtcatgtgtaagcttcatggagaaagtgcaaagttgtggcagaatcggcttagggaggctggggctgagttgggcgactccatctgggtgccttgcttcggtgatttggatggaaaggaataaaaggatctacgatgaccataatggaatgcgagtggaggacctttgggtgaaggttagattcccatcagctttatgggcttcagttttggactgcaaagaaaaaattgatgtggttgcattagcatctaaagagcctattatcttttatgatgaggtagtcttgtatgaagatgaattggcggataatggtgcgtctcttctaactgtaaaagtgcttagagttgatggagtgcttatgagattaagggatacccaagctaggtttcaagctttggctgcaaagggatacccttctgacgctgctgcctacaatgatccaagtatcatcagccaaaggcttcctgtggtcatgaataagacccataagctaaagcctaagtcaggttgtttaactacaaaactcagtgttttggattacaacctagatgtggaatctttaccttgcatacaacctactgaagcttttacatgtgtagatatttcccgacggaagctgcctggccacattgaatgcattacgtcgtcaagtgtgaaaggcatcatgctaaaccgtgtgatggcatcattaaatcttgctacaagtgcagtttcatatctgcttggcttgtgcacaagtgaatggggccatacgttgagcgatcgaagtgttgaagtattgaagggaaaacccatcattgacatcattctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

373

Amino Acids

41.66

Weight (kDa)

6.42

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 61 - 230 2.2e-17 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 396
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 3 cut(s) 27, 85, 611
AclWI GGATC 2 cut(s) 443, 740
AcoI YGGCCR 1 cut(s) 931
AcuI CTGAAG 3 cut(s) 203, 495, 909
AcyI GRCGYC 1 cut(s) 55
AdeI CACNNNGTG 1 cut(s) 302
AfiI CCNNNNNNNGG 6 cut(s) 64, 406, 690, 812, 859, 988
AflIII ACRYGT 1 cut(s) 899
AgeI ACCGGT 1 cut(s) 208
AgsI TTSAA 5 cut(s) 215, 698, 941, 1082, 1090
AjnI CCWGG 2 cut(s) 298, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 9 cut(s) 130, 224, 321, 500, 689, 701, 799, 893, 925
AluI AGCT 9 cut(s) 130, 224, 321, 500, 689, 701, 799, 893, 925
Alw21I GWGCWC 1 cut(s) 1043
Alw26I GTCTC 3 cut(s) 68, 128, 630
Alw44I GTGCAC 1 cut(s) 1039
AlwI GGATC 2 cut(s) 443, 740
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 2 cut(s) 931, 1054
ApaLI GTGCAC 1 cut(s) 1039
ApeKI GCWGC 6 cut(s) 224, 227, 707, 731, 734, 925
AsiGI ACCGGT 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 32, 469, 1054
AsuHPI GGTGA 2 cut(s) 421, 490
AvaII GGWCC 2 cut(s) 32, 469
BaeGI GKGCMC 1 cut(s) 1043
BalI TGGCCA 1 cut(s) 933
BanI GGYRCC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 1043
BbvI GCAGC 6 cut(s) 211, 214, 694, 718, 721, 912
BccI CCATC 6 cut(s) 397, 412, 502, 650, 982, 1109
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 2 cut(s) 300, 930
BciVI GTATCC 2 cut(s) 673, 710
BcoDI GTCTC 3 cut(s) 68, 128, 630
BfaI CTAG 2 cut(s) 690, 854
BfuI GTATCC 2 cut(s) 673, 710
BisI GCNGC 7 cut(s) 27, 225, 228, 708, 732, 735, 926
BlsI GCNGC 7 cut(s) 28, 226, 229, 709, 733, 736, 927
Bme1390I CCNGG 2 cut(s) 300, 930
Bme18I GGWCC 2 cut(s) 32, 469
BmgT120I GGNCC 3 cut(s) 32, 469, 1054
BmiI GGNNCC 2 cut(s) 398, 1055
BmrFI CCNGG 2 cut(s) 300, 930
BmsI GCATC 3 cut(s) 563, 978, 1001
BoxI GACNNNNGTC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu10I CCTNAGC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 493
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 406, 690, 812, 859, 988
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 493
BseBI CCWGG 2 cut(s) 300, 930
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 423
BseJI GATNNNNATC 1 cut(s) 493
BseLI CCNNNNNNNGG 6 cut(s) 64, 406, 690, 812, 859, 988
BseMII CTCAG 4 cut(s) 27, 249, 365, 847
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 6 cut(s) 211, 214, 694, 718, 721, 912
BseYI CCCAGC 3 cut(s) 63, 220, 367
BsgI GTGCAG 1 cut(s) 1035
Bsh1285I CGRYCG 1 cut(s) 1072
BshFI GGCC 2 cut(s) 933, 1056
BshNI GGYRCC 1 cut(s) 396
BshTI ACCGGT 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 1072
BsiHKAI GWGCWC 1 cut(s) 1043
BsiSI CCGG 2 cut(s) 149, 209
BslFI GGGAC 3 cut(s) 126, 179, 203
BslI CCNNNNNNNGG 6 cut(s) 64, 406, 690, 812, 859, 988
BsmAI GTCTC 3 cut(s) 68, 128, 630
BsmBI CGTCTC 1 cut(s) 630
BsmFI GGGAC 3 cut(s) 126, 179, 203
BsmI GAATGC 2 cut(s) 462, 947
BsnI GGCC 2 cut(s) 933, 1056
Bsp1286I GDGCHC 1 cut(s) 1043
Bsp143I GATC 3 cut(s) 435, 745, 1069
BspACI CCGC 3 cut(s) 27, 85, 611
BspANI GGCC 2 cut(s) 933, 1056
BspCNI CTCAG 4 cut(s) 28, 250, 366, 846
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 2 cut(s) 398, 1055
BspPI GGATC 2 cut(s) 443, 740
BspT107I GGYRCC 1 cut(s) 396
BsrBI CCGCTC 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 3 cut(s) 435, 745, 1069
BssNI GRCGYC 1 cut(s) 55
Bst2UI CCWGG 2 cut(s) 300, 930
Bst4CI ACNGT 4 cut(s) 117, 170, 637, 983
Bst6I CTCTTC 1 cut(s) 633
BstACI GRCGYC 1 cut(s) 55
BstDEI CTNAG 7 cut(s) 36, 258, 358, 374, 647, 807, 833
BstDSI CCRYGG 1 cut(s) 58
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 1 cut(s) 423
BstKTI GATC 3 cut(s) 438, 748, 1072
BstMAI GTCTC 3 cut(s) 68, 128, 630
BstMBI GATC 3 cut(s) 435, 745, 1069
BstMCI CGRYCG 1 cut(s) 1072
BstMWI GCNNNNNNNGC 4 cut(s) 354, 506, 707, 1013
BstNI CCWGG 2 cut(s) 300, 930
BstNSI RCATGY 2 cut(s) 191, 903
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 298, 928
BstSLI GKGCMC 1 cut(s) 1043
BstV1I GCAGC 6 cut(s) 211, 214, 694, 718, 721, 912
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuI GTATCC 2 cut(s) 673, 710
BsuRI GGCC 2 cut(s) 933, 1056
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 841
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 1 cut(s) 780
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 3 cut(s) 32, 469, 1054
CseI GACGC 4 cut(s) 63, 294, 612, 737
CsiI ACCWGGT 1 cut(s) 298
CspAI ACCGGT 1 cut(s) 208
CviAII CATG 7 cut(s) 145, 188, 312, 325, 781, 900, 973
DdeI CTNAG 7 cut(s) 36, 258, 358, 374, 647, 807, 833
DpnI GATC 3 cut(s) 437, 747, 1071
DpnII GATC 3 cut(s) 435, 745, 1069
DraIII CACNNNGTG 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 931
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
EciI GGCGGA 1 cut(s) 626
Eco47I GGWCC 2 cut(s) 32, 469
Eco57I CTGAAG 3 cut(s) 203, 495, 909
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 298, 928
EcoT22I ATGCAT 1 cut(s) 947
Esp3I CGTCTC 1 cut(s) 630
FaeI CATG 7 cut(s) 148, 191, 315, 328, 784, 903, 976
FaqI GGGAC 3 cut(s) 126, 179, 203
FatI CATG 7 cut(s) 144, 187, 311, 324, 780, 899, 972
Fnu4HI GCNGC 7 cut(s) 27, 225, 228, 708, 732, 735, 926
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 7 cut(s) 27, 225, 228, 708, 732, 735, 926
FspBI CTAG 2 cut(s) 690, 854
GluI GCNGC 7 cut(s) 27, 225, 228, 708, 732, 735, 926
GsaI CCCAGC 3 cut(s) 67, 224, 371
HaeIII GGCC 2 cut(s) 933, 1056
HapII CCGG 2 cut(s) 149, 209
HgaI GACGC 4 cut(s) 63, 294, 612, 737
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 7 cut(s) 148, 191, 315, 328, 784, 903, 976
HindIII AAGCTT 4 cut(s) 128, 319, 699, 891
HinfI GANTC 6 cut(s) 76, 136, 351, 385, 489, 863
HpaII CCGG 2 cut(s) 149, 209
HphI GGTGA 2 cut(s) 421, 490
Hpy166II GTNNAC 3 cut(s) 16, 251, 1041
Hpy188I TCNGA 5 cut(s) 49, 183, 245, 259, 727
Hpy188III TCNNGA 4 cut(s) 73, 235, 781, 915
Hpy8I GTNNAC 3 cut(s) 16, 251, 1041
Hpy99I CGWCG 4 cut(s) 53, 310, 921, 955
HpyAV CCTTC 3 cut(s) 475, 732, 1084
HpyCH4III ACNGT 4 cut(s) 117, 170, 637, 983
HpyCH4IV ACGT 2 cut(s) 950, 1061
HpyCH4V TGCA 8 cut(s) 337, 525, 548, 710, 876, 945, 1016, 1041
HpyF10VI GCNNNNNNNGC 4 cut(s) 354, 506, 707, 1013
HpyF3I CTNAG 7 cut(s) 36, 258, 358, 374, 647, 807, 833
HpySE526I ACGT 2 cut(s) 950, 1061
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 7 cut(s) 148, 191, 315, 328, 784, 903, 976
Kzo9I GATC 3 cut(s) 435, 745, 1069
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 6 cut(s) 211, 214, 694, 718, 721, 912
LweI GCATC 3 cut(s) 563, 978, 1001
MabI ACCWGGT 1 cut(s) 298
MaeI CTAG 2 cut(s) 690, 854
MaeII ACGT 2 cut(s) 950, 1061
MalI GATC 3 cut(s) 437, 747, 1071
MbiI CCGCTC 1 cut(s) 87
MboI GATC 3 cut(s) 435, 745, 1069
MboII GAAGA 3 cut(s) 136, 611, 620
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 1043
MlsI TGGCCA 1 cut(s) 933
MluCI AATT 2 cut(s) 534, 605
MluNI TGGCCA 1 cut(s) 933
MlyI GAGTC 3 cut(s) 70, 130, 379
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 4, 112, 265, 357, 460, 577
Mox20I TGGCCA 1 cut(s) 933
Mph1103I ATGCAT 1 cut(s) 947
MscI TGGCCA 1 cut(s) 933
MseI TTAA 3 cut(s) 674, 821, 998
MslI CAYNNNNRTG 1 cut(s) 394
Msp20I TGGCCA 1 cut(s) 933
MspA1I CMGCKG 2 cut(s) 29, 224
MspI CCGG 2 cut(s) 149, 209
MspR9I CCNGG 2 cut(s) 300, 930
Mva1269I GAATGC 2 cut(s) 462, 947
MvaI CCWGG 2 cut(s) 300, 930
MwoI GCNNNNNNNGC 4 cut(s) 354, 506, 707, 1013
NdeII GATC 3 cut(s) 435, 745, 1069
NlaIII CATG 7 cut(s) 148, 191, 315, 328, 784, 903, 976
NlaIV GGNNCC 2 cut(s) 398, 1055
NsiI ATGCAT 1 cut(s) 947
NspI RCATGY 2 cut(s) 191, 903
PagI TCATGA 1 cut(s) 780
PciI ACATGT 1 cut(s) 899
PctI GAATGC 2 cut(s) 462, 947
PfeI GAWTC 3 cut(s) 351, 489, 863
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 7 cut(s) 28, 226, 229, 709, 733, 736, 927
Ple19I CGATCG 1 cut(s) 1072
PleI GAGTC 3 cut(s) 70, 130, 379
PpsI GAGTC 3 cut(s) 70, 130, 379
PpuMI RGGWCCY 1 cut(s) 469
PscI ACATGT 1 cut(s) 899
PshAI GACNNNNGTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 2 cut(s) 298, 928
PspFI CCCAGC 3 cut(s) 63, 220, 367
PspGI CCWGG 2 cut(s) 298, 928
PspN4I GGNNCC 2 cut(s) 398, 1055
PspPI GGNCC 3 cut(s) 32, 469, 1054
PspPPI RGGWCCY 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 435
PvuI CGATCG 1 cut(s) 1072
PvuII CAGCTG 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 394
SaqAI TTAA 3 cut(s) 674, 821, 998
SatI GCNGC 7 cut(s) 27, 225, 228, 708, 732, 735, 926
Sau3AI GATC 3 cut(s) 435, 745, 1069
Sau96I GGNCC 3 cut(s) 32, 469, 1054
SchI GAGTC 3 cut(s) 70, 130, 379
ScrFI CCNGG 2 cut(s) 300, 930
SduI GDGCHC 1 cut(s) 1043
SexAI ACCWGGT 1 cut(s) 298
SfaNI GCATC 3 cut(s) 563, 978, 1001
SinI GGWCC 2 cut(s) 32, 469
SmiMI CAYNNNNRTG 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 534, 605
SsiI CCGC 3 cut(s) 27, 85, 611
SspMI CTAG 2 cut(s) 690, 854
StyD4I CCNGG 2 cut(s) 298, 928
TaaI ACNGT 4 cut(s) 117, 170, 637, 983
TaiI ACGT 2 cut(s) 953, 1064
TaqI TCGA 2 cut(s) 72, 1072
TasI AATT 2 cut(s) 534, 605
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 3 cut(s) 351, 489, 863
Tru1I TTAA 3 cut(s) 674, 821, 998
Tru9I TTAA 3 cut(s) 674, 821, 998
TscAI CASTG 1 cut(s) 841
TseI GCWGC 6 cut(s) 224, 227, 707, 731, 734, 925
TspDTI ATGAA 5 cut(s) 313, 612, 618, 797, 1011
TspGWI ACGGA 2 cut(s) 66, 934
TspRI CASTG 1 cut(s) 841
VneI GTGCAC 1 cut(s) 1039
VpaK11BI GGWCC 2 cut(s) 32, 469
XagI CCTNNNNNAGG 1 cut(s) 810
XceI RCATGY 2 cut(s) 191, 903
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XspI CTAG 2 cut(s) 690, 854
Zsp2I ATGCAT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.