Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004838.1

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

31548 .. 34529

Gene Structure 2982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atgagagtgcaacgtaaacgtccgcctactaaaaagggcaaaaaagcatctggtcagagaagttctaggtttcgcggagttactaggtacccaggacattttgaagcatttctatgggataattctgatccacaagtgaaaggcaagacaggtggatttcgagaagaagagcaagctgccagagcacatgatctagctgctttgaagtattggggcgactctaccccattaaacttccctgtgagtgattacatgaaggaattggaggaaatgcaagcatatacaaagaaagactatttgctccatatccgaaggtatggaggcaatatgagatggcaagccagattaggcaaaggcaaagacacgaaaggcctttatgtgggaacatttgatactcaagaggaagcagcaagggcttatgatattgcagtgataaaatgtagaggagggagggaagcagtgaccaattttgacttgagccactatgatgtcaaaggtattcttgagagcccaaatattccaattgaaaatggtgcttcaaagttcataaggtggactgcagctgatcatatcatccagagcagaagaaccactaacaatgtcaccgtttcacaactacaagttgacagctcgggtaataatcctaatataaccccaatagccccaccattatttgaaccaacaatgcaatccctagaaacccattgcaattcaaacccagagcaacaatatctatgcccctcccacagtcccaaccaaaataatgaccagatccacatattccaatttccgcagtactttaacaaccctaacattgaatttgatcatcttccttgttaccagaaccctaatttcccaataaaccctagtttcgataattggggaacccacgttgaaaatgagcagatagagccatcactccagtttcaacctattctgaccccagagaaccacgagtttcagtttcatcagtataacagtaacaattcgcagccccatctgcctcaaaacccttgctcctccagtcttcaagactttcagaatcctaattgccatgaaaaccctaatatttttagtgagttgactaaccttcaaagtggtagcgatatcagggaatttcccagtggtcaggaaccaggggcgaccttcgcaatgatggggacgaacgagagtcacggtgactgcaccaatacagtagaggaaaatagaaattttgctgaagactttagggtggacaatccagacatggacatttcatctagcagctggttcgaaatgttaatgaccttaaacagttctgacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

435

Amino Acids

49.67

Weight (kDa)

5.47

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	105 - 149	3.9e-06	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	87
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	23, 75, 791
AclWI	GGATC	2 cut(s)	122, 766
AcsI	RAATTY	3 cut(s)	818, 1115, 1210
AcuI	CTGAAG	1 cut(s)	1239
AfaI	GTAC	2 cut(s)	89, 797
AfiI	CCNNNNNNNGG	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	91, 1135
AluBI	AGCT	5 cut(s)	176, 197, 563, 630, 1266
AluI	AGCT	5 cut(s)	176, 197, 563, 630, 1266
Alw21I	GWGCWC	1 cut(s)	187
AlwI	GGATC	2 cut(s)	122, 766
Ama87I	CYCGRG	1 cut(s)	631
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	6 cut(s)	176, 197, 407, 560, 991, 1263
ApoI	RAATTY	3 cut(s)	818, 1115, 1210
Asp700I	GAANNNNTTC	1 cut(s)	108
Asp718I	GGTACC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	595, 1190
AsuII	TTCGAA	1 cut(s)	1272
AvaI	CYCGRG	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	512
BauI	CACGAG	1 cut(s)	953
BbsI	GAAGAC	2 cut(s)	1019, 1227
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	6 cut(s)	163, 184, 419, 572, 1003, 1275
BccI	CCATC	4 cut(s)	327, 922, 1005, 1150
BcgI	CGANNNNNNTGC	2 cut(s)	1252, 1286
BciT130I	CCWGG	2 cut(s)	93, 1137
BclI	TGATCA	2 cut(s)	565, 823
BfaI	CTAG	6 cut(s)	66, 84, 194, 695, 867, 1260
BfmI	CTRYAG	1 cut(s)	558
BisI	GCNGC	6 cut(s)	177, 198, 408, 561, 992, 1264
BlsI	GCNGC	6 cut(s)	178, 199, 409, 562, 993, 1265
BmcAI	AGTACT	1 cut(s)	797
Bme1390I	CCNGG	2 cut(s)	93, 1137
BmeT110I	CYCGRG	1 cut(s)	631
BmiI	GGNNCC	3 cut(s)	89, 886, 1134
BmrFI	CCNGG	2 cut(s)	93, 1137
BmrI	ACTGGG	1 cut(s)	1116
BmsI	GCATC	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	1116
BpiI	GAAGAC	2 cut(s)	1019, 1227
BpmI	CTGGAG	2 cut(s)	905, 1006
Bpu14I	TTCGAA	1 cut(s)	1272
BpuEI	CTTGAG	3 cut(s)	381, 496, 524
BsaJI	CCNNGG	2 cut(s)	91, 1136
BsaXI	ACNNNNNCTCC	2 cut(s)	1001, 1031
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	3 cut(s)	922, 1023, 1122
Bse3DI	GCAATG	2 cut(s)	703, 1158
BseBI	CCWGG	2 cut(s)	93, 1137
BseDI	CCNNGG	2 cut(s)	91, 1136
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	2 cut(s)	703, 1158
BseNI	ACTGG	3 cut(s)	922, 1023, 1122
BseRI	GAGGAG	2 cut(s)	459, 1009
BseXI	GCAGC	6 cut(s)	163, 184, 419, 572, 1003, 1275
BsgI	GTGCAG	1 cut(s)	1168
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	631
BslFI	GGGAC	2 cut(s)	735, 1174
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	735, 1174
BsnI	GGCC	1 cut(s)	372
BsoBI	CYCGRG	1 cut(s)	631
Bsp119I	TTCGAA	1 cut(s)	1272
Bsp1286I	GDGCHC	2 cut(s)	187, 512
Bsp143I	GATC	5 cut(s)	127, 190, 565, 771, 823
BspACI	CCGC	3 cut(s)	23, 75, 791
BspANI	GGCC	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	89, 886, 1134
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	2 cut(s)	122, 766
BspQI	GCTCTTC	1 cut(s)	162
BspT104I	TTCGAA	1 cut(s)	1272
BspT107I	GGYRCC	1 cut(s)	87
BsrDI	GCAATG	2 cut(s)	703, 1158
BsrI	ACTGG	3 cut(s)	922, 1023, 1122
BssECI	CCNNGG	2 cut(s)	91, 1136
BssMI	GATC	5 cut(s)	127, 190, 565, 771, 823
BssSI	CACGAG	1 cut(s)	953
Bst2BI	CACGAG	1 cut(s)	953
Bst2UI	CCWGG	2 cut(s)	93, 1137
Bst4CI	ACNGT	6 cut(s)	607, 749, 980, 1178, 1195, 1295
Bst6I	CTCTTC	1 cut(s)	162
BstBI	TTCGAA	1 cut(s)	1272
BstC8I	GCNNGC	3 cut(s)	174, 276, 339
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	5 cut(s)	130, 193, 568, 774, 826
BstMBI	GATC	5 cut(s)	127, 190, 565, 771, 823
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 413, 910, 1000, 1148
BstNI	CCWGG	2 cut(s)	93, 1137
BstSCI	CCNGG	2 cut(s)	91, 1135
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	6 cut(s)	163, 184, 419, 572, 1003, 1275
BstV2I	GAAGAC	2 cut(s)	1019, 1227
BstX2I	RGATCY	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	771
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	573
BtsI	GCAGTG	2 cut(s)	435, 465
BtsIMutI	CAGTG	3 cut(s)	435, 465, 1129
Cac8I	GCNNGC	3 cut(s)	174, 276, 339
Csp6I	GTAC	2 cut(s)	88, 796
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	4 cut(s)	188, 253, 1055, 1246
CviQI	GTAC	2 cut(s)	88, 796
DpnI	GATC	5 cut(s)	129, 192, 567, 773, 825
DpnII	GATC	5 cut(s)	127, 190, 565, 771, 823
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	512
Eco32I	GATATC	1 cut(s)	1108
Eco57I	CTGAAG	1 cut(s)	1239
Eco88I	CYCGRG	1 cut(s)	631
EcoRII	CCWGG	2 cut(s)	91, 1135
EcoRV	GATATC	1 cut(s)	1108
EcoT38I	GRGCYC	1 cut(s)	512
FaeI	CATG	4 cut(s)	191, 256, 1058, 1249
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	2 cut(s)	735, 1174
FatI	CATG	4 cut(s)	187, 252, 1054, 1245
FbaI	TGATCA	2 cut(s)	565, 823
Fnu4HI	GCNGC	6 cut(s)	177, 198, 408, 561, 992, 1264
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	6 cut(s)	177, 198, 408, 561, 992, 1264
FspBI	CTAG	6 cut(s)	66, 84, 194, 695, 867, 1260
GluI	GCNGC	6 cut(s)	177, 198, 408, 561, 992, 1264
GsuI	CTGGAG	2 cut(s)	905, 1006
HaeIII	GGCC	1 cut(s)	372
Hin1II	CATG	4 cut(s)	191, 256, 1058, 1249
HincII	GTYRAC	2 cut(s)	625, 1083
HindII	GTYRAC	2 cut(s)	625, 1083
HinfI	GANTC	3 cut(s)	218, 1042, 1171
HphI	GGTGA	2 cut(s)	595, 1190
Hpy166II	GTNNAC	5 cut(s)	17, 555, 625, 1083, 1234
Hpy188I	TCNGA	7 cut(s)	57, 127, 311, 939, 1041, 1300, 1307
Hpy188III	TCNNGA	7 cut(s)	161, 398, 503, 577, 1031, 1130, 1241
Hpy8I	GTNNAC	5 cut(s)	17, 555, 625, 1083, 1234
HpyAV	CCTTC	4 cut(s)	250, 306, 1100, 1156
HpyCH4III	ACNGT	6 cut(s)	607, 749, 980, 1178, 1195, 1295
HpyCH4IV	ACGT	3 cut(s)	13, 19, 891
HpyCH4V	TGCA	7 cut(s)	10, 274, 428, 560, 688, 708, 1185
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 413, 910, 1000, 1148
HpySE526I	ACGT	3 cut(s)	13, 19, 891
Hsp92II	CATG	4 cut(s)	191, 256, 1058, 1249
KpnI	GGTACC	1 cut(s)	91
Ksp22I	TGATCA	2 cut(s)	565, 823
Kzo9I	GATC	5 cut(s)	127, 190, 565, 771, 823
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	306, 1022
Lsp1109I	GCAGC	6 cut(s)	163, 184, 419, 572, 1003, 1275
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	6 cut(s)	66, 84, 194, 695, 867, 1260
MaeII	ACGT	3 cut(s)	13, 19, 891
MaeIII	GTNAC	7 cut(s)	79, 460, 601, 836, 980, 1172, 1178
MalI	GATC	5 cut(s)	129, 192, 567, 773, 825
MboI	GATC	5 cut(s)	127, 190, 565, 771, 823
MboII	GAAGA	6 cut(s)	176, 179, 597, 821, 1019, 1232
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	771
MhlI	GDGCHC	2 cut(s)	187, 512
MlyI	GAGTC	2 cut(s)	212, 1180
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	4 cut(s)	230, 801, 1280, 1289
MslI	CAYNNNNRTG	2 cut(s)	112, 486
MspA1I	CMGCKG	2 cut(s)	563, 1266
MspR9I	CCNGG	2 cut(s)	93, 1137
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	2 cut(s)	93, 1137
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	5 cut(s)	182, 413, 910, 1000, 1148
NdeII	GATC	5 cut(s)	127, 190, 565, 771, 823
NlaIII	CATG	4 cut(s)	191, 256, 1058, 1249
NlaIV	GGNNCC	3 cut(s)	89, 886, 1134
NmuCI	GTSAC	4 cut(s)	460, 601, 1172, 1178
NspV	TTCGAA	1 cut(s)	1272
PceI	AGGCCT	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	1042
PkrI	GCNGC	6 cut(s)	178, 199, 409, 562, 993, 1265
PleI	GAGTC	2 cut(s)	212, 1179
PpsI	GAGTC	2 cut(s)	212, 1179
Psp6I	CCWGG	2 cut(s)	91, 1135
PspGI	CCWGG	2 cut(s)	91, 1135
PspN4I	GGNNCC	3 cut(s)	89, 886, 1134
PsrI	GAACNNNNNNTAC	2 cut(s)	376, 408
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	771
PvuII	CAGCTG	2 cut(s)	563, 1266
RsaI	GTAC	2 cut(s)	89, 797
RsaNI	GTAC	2 cut(s)	88, 796
RseI	CAYNNNNRTG	2 cut(s)	112, 486
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	230, 801, 1280, 1289
SatI	GCNGC	6 cut(s)	177, 198, 408, 561, 992, 1264
Sau3AI	GATC	5 cut(s)	127, 190, 565, 771, 823
ScaI	AGTACT	1 cut(s)	797
SchI	GAGTC	2 cut(s)	212, 1180
ScrFI	CCNGG	2 cut(s)	93, 1137
SduI	GDGCHC	2 cut(s)	187, 512
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	1 cut(s)	558
SfuI	TTCGAA	1 cut(s)	1272
SmiMI	CAYNNNNRTG	2 cut(s)	112, 486
SmlI	CTYRAG	3 cut(s)	396, 475, 503
SmoI	CTYRAG	3 cut(s)	396, 475, 503
SseBI	AGGCCT	1 cut(s)	372
SsiI	CCGC	3 cut(s)	23, 75, 791
SspI	AATATT	2 cut(s)	517, 1069
SspMI	CTAG	6 cut(s)	66, 84, 194, 695, 867, 1260
StuI	AGGCCT	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	91, 1135
TaaI	ACNGT	6 cut(s)	607, 749, 980, 1178, 1195, 1295
TaiI	ACGT	3 cut(s)	16, 22, 894
TaqI	TCGA	3 cut(s)	160, 873, 1272
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	1 cut(s)	1042
Tru1I	TTAA	4 cut(s)	230, 801, 1280, 1289
Tru9I	TTAA	4 cut(s)	230, 801, 1280, 1289
TscAI	CASTG	3 cut(s)	435, 465, 1129
TseFI	GTSAC	4 cut(s)	460, 601, 1172, 1178
TseI	GCWGC	6 cut(s)	176, 197, 407, 560, 991, 1263
Tsp45I	GTSAC	4 cut(s)	460, 601, 1172, 1178
TspDTI	ATGAA	5 cut(s)	269, 535, 956, 1071, 1245
TspRI	CASTG	3 cut(s)	435, 465, 1129
XapI	RAATTY	3 cut(s)	818, 1115, 1210
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	6 cut(s)	66, 84, 194, 695, 867, 1260
ZrmI	AGTACT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.