Rmu_sc0005055.1_g000021

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005055.1
OG0003264
Physical Location & Seq
Forward (+)
69910 .. 71271
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1362 bp
ctgcctagccacacatcacaacttccagccacggtcctcgtcgttttatccaacacctctcctgctctatcacaggtcatccaatcagccaagtcccgtaagctccttggcatcattgagctcccagcaccctccggccacgacaccaacgccgccggttcagttttcacacacctcccagccatcatgcgtgatgtccgaccatctctccaatccccaatttcggccatggagcacaagcctagcgccatgatcgttgatcatttcggcactgcagcactcaccgtggcagaagagttccgtatgctcaagtatgtaacagtaggctctgcttggacgctaagtttgcttttgtatgcgccaatcctggatacgcagatagaaggagaatatctggatcaaaaggaattgttaaacatcctgggttgcaagccggttcgacctgaagatgtggtgaagccgatgatgaataggaaggatcgggaatacgaatccttcataagaattggaaaagagattacttcagtgagtgatggaatcttgatcaacacatgggaggatctggagccgacttgtcttgaagctatgagggagcacccggactggaagcagataactaaggttccgctgtacactatcggtcccatggttagactggcagggcagtccggtggtggtggtccgaggagtgagttgttggattggctggataagcaaccaagggagtctgtgctctatatttcatttggcagtggtggggttctttcggctgaacagatcacagagatggcttggggtttagagcttagtaagcagaggtttatatgggtggtgcagccaccaagcaaaggaggtgctcaaggcaatgacatttcggagtatttgcctgaggggttcctggctcggactcatgacaagggtctagtggtcaccacttgggctcctcagtcggaaatcttggcacatgcatccgttggagggttcttatcgcactgcggttggaactcagcgctggagagtatactaaatcgcttgccaatgatcgcatggccactatacgcggagcagaaaatggttgctacactactggtggaggagctaaaggtggcgattcgacctaaagtgttgccaacaaaagcactagcagggagggaggagattgagatgttggtgaggaagattacggagcagaaagacggagatgcaatgagagcaagagctaaagaactgaaagcaagtggggaaaaagctctctgtgtgggtggatcttctttcaacacgctgtctgaattgtcaaggctatgcaagatcaataccgaacagcagtgccagacagtagggactgatcaaattctcgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

453

Amino Acids

49.74

Weight (kDa)

5.94

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 241 - 362 2.4e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1021
AccII CGCG 1 cut(s) 1061
AciI CCGC 4 cut(s) 153, 626, 996, 1061
AclWI GGATC 4 cut(s) 405, 486, 567, 1273
AcoI YGGCCR 3 cut(s) 136, 225, 1049
AcsI RAATTY 1 cut(s) 1350
AcuI CTGAAG 2 cut(s) 465, 507
AfaI GTAC 1 cut(s) 632
AfeI AGCGCT 1 cut(s) 1011
AfiI CCNNNNNNNGG 3 cut(s) 223, 848, 978
AgsI TTSAA 2 cut(s) 581, 1276
AjnI CCWGG 3 cut(s) 366, 420, 897
AluBI AGCT 7 cut(s) 103, 121, 584, 805, 1099, 1220, 1250
AluI AGCT 7 cut(s) 103, 121, 584, 805, 1099, 1220, 1250
Alw21I GWGCWC 5 cut(s) 123, 237, 597, 735, 859
AlwI GGATC 4 cut(s) 405, 486, 567, 1273
Aor51HI AGCGCT 1 cut(s) 1011
AoxI GGCC 3 cut(s) 136, 225, 1049
ApeKI GCWGC 2 cut(s) 275, 835
ApoI RAATTY 1 cut(s) 1350
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AspLEI GCGC 3 cut(s) 248, 361, 1012
AspS9I GGNCC 3 cut(s) 34, 641, 680
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 4 cut(s) 274, 466, 922, 1183
AvaII GGWCC 3 cut(s) 34, 641, 680
AxyI CCTNAGG 1 cut(s) 888
BalI TGGCCA 1 cut(s) 1051
BanII GRGCYC 2 cut(s) 123, 943
Bbv12I GWGCWC 5 cut(s) 123, 237, 597, 735, 859
BbvI GCAGC 2 cut(s) 287, 847
BccI CCATC 4 cut(s) 191, 211, 527, 781
BciT130I CCWGG 3 cut(s) 368, 422, 899
BciVI GTATCC 1 cut(s) 364
BclI TGATCA 3 cut(s) 259, 543, 1345
BcnI CCSGG 1 cut(s) 599
BfaI CTAG 4 cut(s) 6, 243, 923, 1142
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 2 cut(s) 249, 1013
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 3 cut(s) 153, 276, 836
BlsI GCNGC 3 cut(s) 154, 277, 837
Bme1390I CCNGG 4 cut(s) 368, 422, 599, 899
Bme18I GGWCC 3 cut(s) 34, 641, 680
BmgT120I GGNCC 3 cut(s) 34, 641, 680
BmiI GGNNCC 5 cut(s) 567, 624, 643, 896, 942
BmrFI CCNGG 4 cut(s) 368, 422, 599, 899
BmsI GCATC 3 cut(s) 120, 977, 1192
BoxI GACNNNNGTC 1 cut(s) 918
BpmI CTGGAG 2 cut(s) 584, 1034
BpuEI CTTGAG 2 cut(s) 293, 843
BpuMI CCSGG 1 cut(s) 599
BsaJI CCNNGG 8 cut(s) 30, 106, 228, 285, 421, 645, 683, 719
BsaWI WCCGGW 1 cut(s) 668
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 925, 955
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 848, 978
Bse118I RCCGGY 2 cut(s) 155, 433
Bse1I ACTGG 3 cut(s) 608, 660, 1092
Bse21I CCTNAGG 1 cut(s) 888
Bse3DI GCAATG 2 cut(s) 871, 1212
BseBI CCWGG 3 cut(s) 368, 422, 899
BseDI CCNNGG 8 cut(s) 30, 106, 228, 285, 421, 645, 683, 719
BseGI GGATG 3 cut(s) 78, 417, 968
BseLI CCNNNNNNNGG 3 cut(s) 223, 848, 978
BseMI GCAATG 2 cut(s) 871, 1212
BseMII CTCAG 3 cut(s) 879, 959, 1020
BseNI ACTGG 3 cut(s) 608, 660, 1092
BseRI GAGGAG 4 cut(s) 700, 933, 1109, 1169
BseXI GCAGC 2 cut(s) 287, 847
BseYI CCCAGC 2 cut(s) 124, 178
BsgI GTGCAG 1 cut(s) 854
Bsh1236I CGCG 1 cut(s) 1061
BshFI GGCC 3 cut(s) 138, 227, 1051
BsiHKAI GWGCWC 5 cut(s) 123, 237, 597, 735, 859
BsiSI CCGG 5 cut(s) 135, 156, 434, 599, 669
BslFI GGGAC 3 cut(s) 79, 627, 1354
BslI CCNNNNNNNGG 3 cut(s) 223, 848, 978
BsmFI GGGAC 3 cut(s) 79, 627, 1354
BsnI GGCC 3 cut(s) 138, 227, 1051
Bsp1286I GDGCHC 6 cut(s) 123, 237, 597, 735, 859, 943
Bsp1407I TGTACA 1 cut(s) 630
Bsp19I CCATGG 2 cut(s) 228, 645
BspACI CCGC 4 cut(s) 153, 626, 996, 1061
BspANI GGCC 3 cut(s) 138, 227, 1051
BspCNI CTCAG 3 cut(s) 880, 958, 1019
BspFNI CGCG 1 cut(s) 1061
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 5 cut(s) 567, 624, 643, 896, 942
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 4 cut(s) 405, 486, 567, 1273
BsrDI GCAATG 2 cut(s) 871, 1212
BsrFI RCCGGY 2 cut(s) 155, 433
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 3 cut(s) 608, 660, 1092
BssAI RCCGGY 2 cut(s) 155, 433
BssECI CCNNGG 8 cut(s) 30, 106, 228, 285, 421, 645, 683, 719
BssNAI GTATAC 1 cut(s) 1022
BssT1I CCWWGG 4 cut(s) 106, 228, 645, 719
Bst1107I GTATAC 1 cut(s) 1022
Bst2UI CCWGG 3 cut(s) 368, 422, 899
Bst4CI ACNGT 4 cut(s) 34, 286, 322, 1336
Bst6I CTCTTC 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 630
BstC8I GCNNGC 2 cut(s) 431, 1034
BstDEI CTNAG 6 cut(s) 341, 618, 806, 888, 945, 1006
BstDSI CCRYGG 4 cut(s) 30, 228, 285, 645
BstEII GGTNACC 1 cut(s) 928
BstF5I GGATG 3 cut(s) 78, 417, 968
BstFNI CGCG 1 cut(s) 1061
BstH2I RGCGCY 2 cut(s) 249, 1013
BstHHI GCGC 3 cut(s) 248, 361, 1012
BstMWI GCNNNNNNNGC 4 cut(s) 346, 712, 811, 1211
BstNI CCWGG 3 cut(s) 368, 422, 899
BstNSI RCATGY 1 cut(s) 968
BstPAI GACNNNNGTC 1 cut(s) 918
BstPI GGTNACC 1 cut(s) 928
BstSCI CCNGG 4 cut(s) 366, 420, 597, 897
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 1061
BstV1I GCAGC 2 cut(s) 287, 847
BstX2I RGATCY 2 cut(s) 559, 1265
BstYI RGATCY 2 cut(s) 559, 1265
BstZ17I GTATAC 1 cut(s) 1022
Bsu36I CCTNAGG 1 cut(s) 888
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 3 cut(s) 138, 227, 1051
BtgI CCRYGG 4 cut(s) 30, 228, 285, 645
BtsCI GGATG 3 cut(s) 78, 417, 968
BtsI GCAGTG 4 cut(s) 270, 757, 991, 1331
BtsIMutI CAGTG 5 cut(s) 270, 531, 757, 991, 1331
Cac8I GCNNGC 2 cut(s) 431, 1034
CciI TCATGA 1 cut(s) 910
CfoI GCGC 3 cut(s) 248, 361, 1012
Cfr10I RCCGGY 2 cut(s) 155, 433
Cfr13I GGNCC 3 cut(s) 34, 641, 680
CseI GACGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 631
CviAII CATG 8 cut(s) 187, 229, 250, 552, 646, 911, 965, 1047
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 6 cut(s) 341, 618, 806, 888, 945, 1006
EaeI YGGCCR 3 cut(s) 136, 225, 1049
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 4 cut(s) 106, 228, 645, 719
Eco24I GRGCYC 2 cut(s) 123, 943
Eco47I GGWCC 3 cut(s) 34, 641, 680
Eco47III AGCGCT 1 cut(s) 1011
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 2 cut(s) 465, 507
Eco81I CCTNAGG 1 cut(s) 888
Eco91I GGTNACC 1 cut(s) 928
EcoICRI GAGCTC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 928
EcoRII CCWGG 3 cut(s) 366, 420, 897
EcoT14I CCWWGG 4 cut(s) 106, 228, 645, 719
EcoT22I ATGCAT 1 cut(s) 970
EcoT38I GRGCYC 2 cut(s) 123, 943
ErhI CCWWGG 4 cut(s) 106, 228, 645, 719
FaeI CATG 8 cut(s) 190, 232, 253, 555, 649, 914, 968, 1050
FaqI GGGAC 3 cut(s) 79, 627, 1354
FatI CATG 8 cut(s) 186, 228, 249, 551, 645, 910, 964, 1046
FbaI TGATCA 3 cut(s) 259, 543, 1345
FblI GTMKAC 1 cut(s) 1021
Fnu4HI GCNGC 3 cut(s) 153, 276, 836
FokI GGATG 3 cut(s) 65, 404, 955
FriOI GRGCYC 2 cut(s) 123, 943
Fsp4HI GCNGC 3 cut(s) 153, 276, 836
FspBI CTAG 4 cut(s) 6, 243, 923, 1142
GlaI GCGC 3 cut(s) 247, 360, 1011
GluI GCNGC 3 cut(s) 153, 276, 836
GsaI CCCAGC 2 cut(s) 128, 182
GsuI CTGGAG 2 cut(s) 584, 1034
HaeII RGCGCY 2 cut(s) 249, 1013
HaeIII GGCC 3 cut(s) 138, 227, 1051
HapII CCGG 5 cut(s) 135, 156, 434, 599, 669
HgaI GACGC 1 cut(s) 346
HhaI GCGC 3 cut(s) 248, 361, 1012
Hin1II CATG 8 cut(s) 190, 232, 253, 555, 649, 914, 968, 1050
Hin6I GCGC 3 cut(s) 246, 359, 1010
HinP1I GCGC 3 cut(s) 246, 359, 1010
HinfI GANTC 5 cut(s) 491, 537, 725, 907, 1111
HpaII CCGG 5 cut(s) 135, 156, 434, 599, 669
HphI GGTGA 4 cut(s) 274, 466, 922, 1183
Hpy166II GTNNAC 2 cut(s) 633, 1022
Hpy188I TCNGA 6 cut(s) 200, 684, 877, 906, 952, 1288
Hpy188III TCNNGA 6 cut(s) 395, 482, 541, 563, 578, 911
Hpy8I GTNNAC 2 cut(s) 633, 1022
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 377, 469, 505
HpyCH4III ACNGT 4 cut(s) 34, 286, 322, 1336
HpyCH4V TGCA 6 cut(s) 275, 429, 835, 968, 1205, 1305
HpyF10VI GCNNNNNNNGC 4 cut(s) 346, 712, 811, 1211
HpyF3I CTNAG 6 cut(s) 341, 618, 806, 888, 945, 1006
Hsp92II CATG 8 cut(s) 190, 232, 253, 555, 649, 914, 968, 1050
HspAI GCGC 3 cut(s) 246, 359, 1010
Ksp22I TGATCA 3 cut(s) 259, 543, 1345
LmnI GCTCC 9 cut(s) 108, 126, 232, 565, 592, 946, 1063, 1096, 1186
Lsp1109I GCAGC 2 cut(s) 287, 847
LweI GCATC 3 cut(s) 120, 977, 1192
MaeI CTAG 4 cut(s) 6, 243, 923, 1142
MaeIII GTNAC 2 cut(s) 316, 928
MboII GAAGA 4 cut(s) 305, 458, 1189, 1260
MflI RGATCY 2 cut(s) 559, 1265
MhlI GDGCHC 6 cut(s) 123, 237, 597, 735, 859, 943
MlsI TGGCCA 1 cut(s) 1051
MluCI AATT 5 cut(s) 219, 407, 504, 1289, 1350
MluNI TGGCCA 1 cut(s) 1051
MlyI GAGTC 2 cut(s) 734, 901
MmeI TCCRAC 6 cut(s) 75, 223, 678, 930, 955, 980
Mox20I TGGCCA 1 cut(s) 1051
Mph1103I ATGCAT 1 cut(s) 970
MscI TGGCCA 1 cut(s) 1051
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 785
Msp20I TGGCCA 1 cut(s) 1051
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 5 cut(s) 135, 156, 434, 599, 669
MspR9I CCNGG 4 cut(s) 368, 422, 599, 899
MvaI CCWGG 3 cut(s) 368, 422, 899
MvnI CGCG 1 cut(s) 1061
MwoI GCNNNNNNNGC 4 cut(s) 346, 712, 811, 1211
NciI CCSGG 1 cut(s) 599
NcoI CCATGG 2 cut(s) 228, 645
NlaIII CATG 8 cut(s) 190, 232, 253, 555, 649, 914, 968, 1050
NlaIV GGNNCC 5 cut(s) 567, 624, 643, 896, 942
NmuCI GTSAC 1 cut(s) 928
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 1 cut(s) 968
PagI TCATGA 1 cut(s) 910
PfeI GAWTC 3 cut(s) 491, 537, 1111
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 3 cut(s) 154, 277, 837
PleI GAGTC 2 cut(s) 733, 901
PpsI GAGTC 2 cut(s) 733, 901
PshAI GACNNNNGTC 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 123
Psp6I CCWGG 3 cut(s) 366, 420, 897
PspEI GGTNACC 1 cut(s) 928
PspFI CCCAGC 2 cut(s) 124, 178
PspGI CCWGG 3 cut(s) 366, 420, 897
PspN4I GGNNCC 5 cut(s) 567, 624, 643, 896, 942
PspPI GGNCC 3 cut(s) 34, 641, 680
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 2 cut(s) 559, 1265
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
RseI CAYNNNNRTG 1 cut(s) 785
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 3 cut(s) 153, 276, 836
Sau96I GGNCC 3 cut(s) 34, 641, 680
SchI GAGTC 2 cut(s) 734, 901
ScrFI CCNGG 4 cut(s) 368, 422, 599, 899
SduI GDGCHC 6 cut(s) 123, 237, 597, 735, 859, 943
SfaNI GCATC 3 cut(s) 120, 977, 1192
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 3 cut(s) 34, 641, 680
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 308, 858
SmoI CTYRAG 2 cut(s) 308, 858
Sse9I AATT 5 cut(s) 219, 407, 504, 1289, 1350
SsiI CCGC 4 cut(s) 153, 626, 996, 1061
SspMI CTAG 4 cut(s) 6, 243, 923, 1142
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 4 cut(s) 366, 420, 597, 897
StyI CCWWGG 4 cut(s) 106, 228, 645, 719
TaaI ACNGT 4 cut(s) 34, 286, 322, 1336
TaqI TCGA 2 cut(s) 439, 1114
TaqII GACCGA 1 cut(s) 629
TasI AATT 5 cut(s) 219, 407, 504, 1289, 1350
TatI WGTACW 1 cut(s) 630
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 491, 537, 1111
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 5 cut(s) 277, 531, 757, 998, 1331
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 2 cut(s) 275, 835
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 3 cut(s) 482, 487, 732
TspGWI ACGGA 4 cut(s) 290, 961, 1199, 1212
TspRI CASTG 5 cut(s) 277, 531, 757, 998, 1331
VpaK11BI GGWCC 3 cut(s) 34, 641, 680
XapI RAATTY 1 cut(s) 1350
XceI RCATGY 1 cut(s) 968
XcmI CCANNNNNNNNNTGG 2 cut(s) 652, 1044
XmiI GTMKAC 1 cut(s) 1021
XspI CTAG 4 cut(s) 6, 243, 923, 1142
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.