Rmu_sc0005139.1_g000015

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005139.1
OG0004243
Physical Location & Seq
Forward (+)
53119 .. 54697
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 612 bp
atggacgaaaattcgcagaagatcgacaacactggctacgagtcaatgactctgttattcaagaagcatggtctctgcagtacgttcctcgatctctttgttcttattctcacctttgaagaagagaatctgaaccaagtctggaagaaagaggtggaaacagtctttgaatctcatggcctttcatgcaaattgaactgggatgagtgtaagatgactgttagtgcaacagaacgtaccctggaccgaaggatcatttacaggggtgcacgtgctctctttgttctggcatgtggtcttggcactgaatgggttgaaccaatcgtctccggcagtgtccatagtgatgtcatgaaaattaaaataccagatggcatgactgaggatgatttttcaagcaagtatcatgatttcatattcaaatttgaagacaaatttgtactacctcgaaagctgtcctgctttgttctctatcatgaagcagctgttgttgttctttccgataaagccgggtcaacaagtatagtgaggaatcttgtgactagttgtcttcttggcgatgatccttttgatgaagaccattttcatgaattgttccttgatgatgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.24

Weight (kDa)

4.84

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 34 - 97 2.6e-06 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 260, 557
AcsI RAATTY 3 cut(s) 10, 422, 434
AcvI CACGTG 1 cut(s) 272
AfaI GTAC 3 cut(s) 82, 238, 441
AgsI TTSAA 8 cut(s) 61, 119, 170, 196, 317, 396, 421, 428
AhdI GACNNNNNGTC 1 cut(s) 546
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 2 cut(s) 454, 485
AluI AGCT 2 cut(s) 454, 485
Alw21I GWGCWC 2 cut(s) 271, 277
Alw26I GTCTC 2 cut(s) 77, 331
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 2 cut(s) 260, 557
AoxI GGCC 1 cut(s) 178
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 3 cut(s) 10, 422, 434
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 271
BbrPI CACGTG 1 cut(s) 272
BbsI GAAGAC 3 cut(s) 435, 542, 582
Bbv12I GWGCWC 2 cut(s) 271, 277
BbvI GCAGC 1 cut(s) 494
BccI CCATC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 242
BcnI CCSGG 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 77, 331
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 484
Bme1390I CCNGG 2 cut(s) 242, 511
Bme18I GGWCC 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 546
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 242, 511
BmrI ACTGGG 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 3 cut(s) 435, 542, 582
BpuMI CCSGG 1 cut(s) 511
BsaAI YACGTR 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 240
Bse1I ACTGG 2 cut(s) 37, 203
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 208, 391
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 2 cut(s) 37, 203
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 1 cut(s) 494
BshFI GGCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 271, 277
BsiSI CCGG 2 cut(s) 330, 510
BsmAI GTCTC 2 cut(s) 77, 331
BsmBI CGTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 271, 277
Bsp143I GATC 4 cut(s) 21, 91, 252, 562
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 373
BspHI TCATGA 4 cut(s) 351, 406, 475, 586
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 2 cut(s) 260, 557
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 37, 203
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 4 cut(s) 21, 91, 252, 562
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 163, 220
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 208, 391
BstKTI GATC 4 cut(s) 24, 94, 255, 565
BstMAI GTCTC 2 cut(s) 77, 331
BstMBI GATC 4 cut(s) 21, 91, 252, 562
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 240, 509
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 494
BstV2I GAAGAC 3 cut(s) 435, 542, 582
BsuRI GGCC 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 2 cut(s) 208, 391
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 3 cut(s) 30, 303, 340
CciI TCATGA 4 cut(s) 351, 406, 475, 586
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 3 cut(s) 81, 237, 440
CviAII CATG 9 cut(s) 68, 176, 186, 291, 352, 376, 407, 476, 587
CviJI RGCY 5 cut(s) 36, 180, 454, 485, 509
CviKI_1 RGCY 5 cut(s) 36, 180, 454, 485, 509
CviQI GTAC 3 cut(s) 81, 237, 440
DdeI CTNAG 1 cut(s) 381
DpnI GATC 4 cut(s) 23, 93, 254, 564
DpnII GATC 4 cut(s) 21, 91, 252, 562
DriI GACNNNNNGTC 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 117
Eam1105I GACNNNNNGTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 244
Eco72I CACGTG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 9 cut(s) 71, 179, 189, 294, 355, 379, 410, 479, 590
FatI CATG 9 cut(s) 67, 175, 185, 290, 351, 375, 406, 475, 586
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 2 cut(s) 215, 398
Fsp4HI GCNGC 1 cut(s) 483
FspBI CTAG 1 cut(s) 543
GluI GCNGC 1 cut(s) 483
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 330, 510
Hin1II CATG 9 cut(s) 71, 179, 189, 294, 355, 379, 410, 479, 590
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 5 cut(s) 41, 49, 127, 170, 532
HpaII CCGG 2 cut(s) 330, 510
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 269, 516
Hpy188I TCNGA 2 cut(s) 132, 502
Hpy188III TCNNGA 6 cut(s) 61, 142, 352, 407, 476, 587
Hpy8I GTNNAC 2 cut(s) 269, 516
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 2 cut(s) 163, 220
HpyCH4IV ACGT 3 cut(s) 83, 235, 271
HpyCH4V TGCA 4 cut(s) 78, 189, 227, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 3 cut(s) 83, 235, 271
Hsp92II CATG 9 cut(s) 71, 179, 189, 294, 355, 379, 410, 479, 590
Kzo9I GATC 4 cut(s) 21, 91, 252, 562
Lsp1109I GCAGC 1 cut(s) 494
MaeI CTAG 1 cut(s) 543
MaeII ACGT 3 cut(s) 83, 235, 271
MaeIII GTNAC 1 cut(s) 538
MalI GATC 4 cut(s) 23, 93, 254, 564
MboI GATC 4 cut(s) 21, 91, 252, 562
MboII GAAGA 7 cut(s) 31, 131, 134, 157, 440, 542, 587
MhlI GDGCHC 2 cut(s) 271, 277
MluCI AATT 6 cut(s) 10, 191, 357, 422, 434, 590
MlyI GAGTC 2 cut(s) 43, 50
MnlI CCTC 5 cut(s) 98, 145, 376, 456, 522
MseI TTAA 2 cut(s) 360, 610
MslI CAYNNNNRTG 2 cut(s) 345, 585
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 2 cut(s) 330, 510
MspR9I CCNGG 2 cut(s) 242, 511
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 186
NciI CCSGG 1 cut(s) 511
NdeII GATC 4 cut(s) 21, 91, 252, 562
NlaIII CATG 9 cut(s) 71, 179, 189, 294, 355, 379, 410, 479, 590
NmuCI GTSAC 1 cut(s) 538
NspI RCATGY 1 cut(s) 294
PagI TCATGA 4 cut(s) 351, 406, 475, 586
PfeI GAWTC 3 cut(s) 127, 170, 532
PkrI GCNGC 1 cut(s) 484
PleI GAGTC 2 cut(s) 43, 49
PmaCI CACGTG 1 cut(s) 272
PmlI CACGTG 1 cut(s) 272
PpsI GAGTC 2 cut(s) 43, 49
Ppu21I YACGTR 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 240
PspCI CACGTG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 240
PspPI GGNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 3 cut(s) 82, 238, 441
RsaNI GTAC 3 cut(s) 81, 237, 440
RseI CAYNNNNRTG 2 cut(s) 345, 585
SaqAI TTAA 2 cut(s) 360, 610
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 4 cut(s) 21, 91, 252, 562
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 2 cut(s) 43, 50
ScrFI CCNGG 2 cut(s) 242, 511
SduI GDGCHC 2 cut(s) 271, 277
SetI ASST 8 cut(s) 86, 116, 156, 238, 274, 448, 456, 487
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 345, 585
SpeI ACTAGT 1 cut(s) 542
Sse9I AATT 6 cut(s) 10, 191, 357, 422, 434, 590
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 240, 509
TaaI ACNGT 2 cut(s) 163, 220
TaiI ACGT 3 cut(s) 86, 238, 274
TaqI TCGA 3 cut(s) 24, 90, 448
TaqII GACCGA 1 cut(s) 261
TasI AATT 6 cut(s) 10, 191, 357, 422, 434, 590
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 3 cut(s) 127, 170, 532
Tru1I TTAA 2 cut(s) 360, 610
Tru9I TTAA 2 cut(s) 360, 610
TscAI CASTG 3 cut(s) 37, 310, 340
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 7 cut(s) 174, 368, 403, 492, 575, 588, 603
TspRI CASTG 3 cut(s) 37, 310, 340
VneI GTGCAC 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 3 cut(s) 10, 422, 434
XceI RCATGY 1 cut(s) 294
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.