Rmu_sc0005723.1_g000004

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005723.1
OG0001436
Physical Location & Seq
Reverse (-)
20716 .. 30095
9380 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1320 bp
atgaactcctccaatgcattcaaatcattcaaagaagatgggaattggcaaattcagttgaatgattcggttggtcccaatgttcgttgcgatcatactcttctctttgtttctcgccggcgatttggggtcgcgttttcttctcttgtcgcttcctcttctcctcctgcctcgtcagcgcctgaatctccctttttcgccgtgctgctggatctcacaaccgccgccgtctggattccgttttctctcgtatctcctccgttgagagtttcggtctctccgatttttctgaaactcgcgcctccggtttccggctcaatctcctcctctttcattcctgggaggcatcaggtgcattctagatggcgtggtgatgcaggtggtaaaggaaataccagaaaagaagagctctaccaggcttctgcaaccctcaaggttccacatcaacaagtgaagattctggaccatcaggatcttcgggatgggtttggtaaggtgcggaatcacaagttattggcaaagattattgaaaaggaagttgtaagtcagggcattgacttgataatttcttttgataattatggagtttcgggacactgtaaccatcgtgacgtgcagtttgaagtaaggcttctgcttgcatcgtcacagaggaatgttgaagcctgggaacttgtcagtactaacatatttctcaagtatagtgcaccagtggatatatggtcctccaatttatattctacgcaatgctcaaatgaaatgttgcattgcttggtgatgagcaaccccgaaagagcttcctggcgatggcacaacatgcaagccagtggaattggtggcagtgccaagaagagaaatgtgttgctggttgttgcccacccagatgatgagtccatgtggcagtgccaagaagagaaatgtgctgctgttgcccacccagatgatgagtccatgttcttcactccaacaataaactacctcacttcgagagggcataatattcacatcttatgcttgtcaattggtgatgcagatggtaaaggaaataccagaaaagaagagctctaccaggcttctgcaaccctcaaggttccacatcaacaagtgaagattctggaccatccagatcttcgggatggttttggtaaggtgtggaatcacaatttattggcaaagattattgaagaggaagttgtaagtcagggcattgacttgataattacttttgataattatggagtttggggacactgtaaccatcgtgacgtgcattttggagtaaggtatgttgaacttaattttctagtcgcctccagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

439

Amino Acids

49.02

Weight (kDa)

6.85

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-L PF02585 310 - 428 4.3e-20 GlcNAc-PI de-N-acetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 368
AccII CGCG 2 cut(s) 134, 299
AciI CCGC 3 cut(s) 222, 225, 499
AclWI GGATC 2 cut(s) 219, 480
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 1 cut(s) 682
AfiI CCNNNNNNNGG 3 cut(s) 231, 311, 807
AgsI TTSAA 8 cut(s) 22, 31, 61, 530, 623, 662, 1184, 1292
AjiI CACGTC 2 cut(s) 613, 1267
AjnI CCWGG 5 cut(s) 337, 414, 665, 800, 1068
AluBI AGCT 3 cut(s) 409, 797, 1063
AluI AGCT 3 cut(s) 409, 797, 1063
Alw21I GWGCWC 3 cut(s) 411, 709, 1065
Alw26I GTCTC 1 cut(s) 280
Alw44I GTGCAC 1 cut(s) 705
AlwI GGATC 2 cut(s) 219, 480
AlwNI CAGNNNCTG 1 cut(s) 182
ApaLI GTGCAC 1 cut(s) 705
ApeKI GCWGC 2 cut(s) 205, 923
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 4 cut(s) 602, 634, 1256, 1288
AspLEI GCGC 2 cut(s) 181, 301
AspS9I GGNCC 4 cut(s) 74, 463, 723, 1117
AsuHPI GGTGA 3 cut(s) 383, 787, 1037
AvaII GGWCC 4 cut(s) 74, 463, 723, 1117
BaeGI GKGCMC 1 cut(s) 709
BanII GRGCYC 2 cut(s) 411, 1065
Bbv12I GWGCWC 3 cut(s) 411, 709, 1065
BbvI GCAGC 2 cut(s) 192, 910
BceAI ACGGC 2 cut(s) 185, 212
BciT130I CCWGG 5 cut(s) 339, 416, 667, 802, 1070
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 360, 1304
BfoI RGCGCY 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 368
BglII AGATCT 1 cut(s) 1126
BisI GCNGC 3 cut(s) 206, 225, 924
BlsI GCNGC 3 cut(s) 207, 226, 925
BmcAI AGTACT 1 cut(s) 682
Bme1390I CCNGG 5 cut(s) 339, 416, 667, 802, 1070
Bme18I GGWCC 4 cut(s) 74, 463, 723, 1117
BmgBI CACGTC 2 cut(s) 613, 1267
BmgT120I GGNCC 4 cut(s) 74, 463, 723, 1117
BmiI GGNNCC 3 cut(s) 76, 438, 1092
BmrFI CCNGG 5 cut(s) 339, 416, 667, 802, 1070
BmsI GCATC 4 cut(s) 355, 364, 650, 1018
BpmI CTGGAG 1 cut(s) 1297
BpuEI CTTGAG 3 cut(s) 416, 680, 1070
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 338, 666
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 311, 807
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 3 cut(s) 710, 825, 1314
Bse3DI GCAATG 2 cut(s) 752, 766
BseBI CCWGG 5 cut(s) 339, 416, 667, 802, 1070
BseDI CCNNGG 2 cut(s) 338, 666
BseGI GGATG 3 cut(s) 487, 1120, 1141
BseLI CCNNNNNNNGG 3 cut(s) 231, 311, 807
BseMI GCAATG 2 cut(s) 752, 766
BseNI ACTGG 3 cut(s) 710, 825, 1314
BseRI GAGGAG 4 cut(s) 153, 246, 313, 316
BseSI GKGCMC 1 cut(s) 709
BseXI GCAGC 2 cut(s) 192, 910
BsgI GTGCAG 1 cut(s) 635
Bsh1236I CGCG 2 cut(s) 134, 299
BsiHKAI GWGCWC 3 cut(s) 411, 709, 1065
BsiSI CCGG 3 cut(s) 118, 305, 312
BslFI GGGAC 3 cut(s) 60, 606, 1260
BslI CCNNNNNNNGG 3 cut(s) 231, 311, 807
BsmAI GTCTC 1 cut(s) 280
BsmFI GGGAC 3 cut(s) 60, 606, 1260
BsmI GAATGC 2 cut(s) 17, 355
Bso31I GGTCTC 1 cut(s) 280
Bsp1286I GDGCHC 3 cut(s) 411, 709, 1065
Bsp143I GATC 4 cut(s) 91, 211, 472, 1126
BspACI CCGC 3 cut(s) 222, 225, 499
BspFNI CGCG 2 cut(s) 134, 299
BspLI GGNNCC 3 cut(s) 76, 438, 1092
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 2 cut(s) 219, 480
BspQI GCTCTTC 2 cut(s) 399, 1053
BspTNI GGTCTC 1 cut(s) 280
BsrDI GCAATG 2 cut(s) 752, 766
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 3 cut(s) 710, 825, 1314
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 338, 666
BssMI GATC 4 cut(s) 91, 211, 472, 1126
Bst2UI CCWGG 5 cut(s) 339, 416, 667, 802, 1070
Bst4CI ACNGT 2 cut(s) 599, 1253
Bst6I CTCTTC 7 cut(s) 105, 163, 399, 845, 906, 1053, 1179
BstAPI GCANNNNNTGC 2 cut(s) 352, 817
BstC8I GCNNGC 3 cut(s) 119, 639, 822
BstF5I GGATG 3 cut(s) 487, 1120, 1141
BstFNI CGCG 2 cut(s) 134, 299
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 2 cut(s) 181, 301
BstKTI GATC 4 cut(s) 94, 214, 475, 1129
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 91, 211, 472, 1126
BstMWI GCNNNNNNNGC 4 cut(s) 176, 352, 817, 929
BstNI CCWGG 5 cut(s) 339, 416, 667, 802, 1070
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 5 cut(s) 337, 414, 665, 800, 1068
BstSLI GKGCMC 1 cut(s) 709
BstUI CGCG 2 cut(s) 134, 299
BstV1I GCAGC 2 cut(s) 192, 910
BstX2I RGATCY 3 cut(s) 211, 472, 1126
BstYI RGATCY 3 cut(s) 211, 472, 1126
BtgZI GCGATG 1 cut(s) 820
BtrI CACGTC 2 cut(s) 613, 1267
BtsCI GGATG 3 cut(s) 487, 1120, 1141
BtsI GCAGTG 2 cut(s) 847, 908
BtsIMutI CAGTG 6 cut(s) 595, 717, 832, 847, 908, 1249
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 3 cut(s) 119, 639, 822
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 2 cut(s) 181, 301
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 4 cut(s) 74, 463, 723, 1117
Csp6I GTAC 1 cut(s) 681
CviAII CATG 3 cut(s) 817, 895, 952
CviJI RGCY 9 cut(s) 315, 409, 419, 631, 665, 797, 824, 1063, 1073
CviKI_1 RGCY 9 cut(s) 315, 409, 419, 631, 665, 797, 824, 1063, 1073
CviQI GTAC 1 cut(s) 681
DpnI GATC 4 cut(s) 93, 213, 474, 1128
DpnII GATC 4 cut(s) 91, 211, 472, 1126
Eam1104I CTCTTC 7 cut(s) 105, 163, 399, 845, 906, 1053, 1179
EarI CTCTTC 7 cut(s) 105, 163, 399, 845, 906, 1053, 1179
Ecl136II GAGCTC 2 cut(s) 409, 1063
Eco24I GRGCYC 2 cut(s) 411, 1065
Eco31I GGTCTC 1 cut(s) 280
Eco47I GGWCC 4 cut(s) 74, 463, 723, 1117
Eco53kI GAGCTC 2 cut(s) 409, 1063
EcoICRI GAGCTC 2 cut(s) 409, 1063
EcoRII CCWGG 5 cut(s) 337, 414, 665, 800, 1068
EcoT22I ATGCAT 1 cut(s) 19
EcoT38I GRGCYC 2 cut(s) 411, 1065
FaeI CATG 3 cut(s) 820, 898, 955
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 3 cut(s) 60, 606, 1260
FatI CATG 3 cut(s) 816, 894, 951
Fnu4HI GCNGC 3 cut(s) 206, 225, 924
FokI GGATG 3 cut(s) 494, 1107, 1148
FriOI GRGCYC 2 cut(s) 411, 1065
Fsp4HI GCNGC 3 cut(s) 206, 225, 924
FspBI CTAG 2 cut(s) 360, 1304
GlaI GCGC 2 cut(s) 180, 300
GluI GCNGC 3 cut(s) 206, 225, 924
GsuI CTGGAG 1 cut(s) 1297
HaeII RGCGCY 1 cut(s) 182
HapII CCGG 3 cut(s) 118, 305, 312
HhaI GCGC 2 cut(s) 181, 301
Hin1II CATG 3 cut(s) 820, 898, 955
Hin6I GCGC 2 cut(s) 179, 299
HinP1I GCGC 2 cut(s) 179, 299
HinfI GANTC 9 cut(s) 65, 185, 235, 457, 502, 890, 947, 1111, 1156
HpaII CCGG 3 cut(s) 118, 305, 312
HphI GGTGA 3 cut(s) 383, 787, 1037
Hpy166II GTNNAC 1 cut(s) 707
Hpy188I TCNGA 2 cut(s) 282, 291
Hpy8I GTNNAC 1 cut(s) 707
HpyCH4III ACNGT 2 cut(s) 599, 1253
HpyCH4IV ACGT 2 cut(s) 612, 1266
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 352, 817, 929
HpySE526I ACGT 2 cut(s) 612, 1266
Hsp92II CATG 3 cut(s) 820, 898, 955
HspAI GCGC 2 cut(s) 179, 299
KroI GCCGGC 1 cut(s) 117
KroNI GCCGGC 1 cut(s) 119
Kzo9I GATC 4 cut(s) 91, 211, 472, 1126
LguI GCTCTTC 2 cut(s) 399, 1053
Lsp1109I GCAGC 2 cut(s) 192, 910
LweI GCATC 4 cut(s) 355, 364, 650, 1018
MaeI CTAG 2 cut(s) 360, 1304
MaeII ACGT 2 cut(s) 612, 1266
MaeIII GTNAC 5 cut(s) 599, 608, 645, 1253, 1262
MalI GATC 4 cut(s) 93, 213, 474, 1128
MboI GATC 4 cut(s) 91, 211, 472, 1126
MfeI CAATTG 1 cut(s) 1020
MflI RGATCY 3 cut(s) 211, 472, 1126
MhlI GDGCHC 3 cut(s) 411, 709, 1065
MlyI GAGTC 2 cut(s) 899, 956
MmeI TCCRAC 1 cut(s) 989
Mph1103I ATGCAT 1 cut(s) 19
MreI CGCCGGCG 1 cut(s) 117
MroNI GCCGGC 1 cut(s) 117
MseI TTAA 2 cut(s) 1296, 1318
MslI CAYNNNNRTG 2 cut(s) 882, 939
MspI CCGG 3 cut(s) 118, 305, 312
MspR9I CCNGG 5 cut(s) 339, 416, 667, 802, 1070
MunI CAATTG 1 cut(s) 1020
Mva1269I GAATGC 2 cut(s) 17, 355
MvaI CCWGG 5 cut(s) 339, 416, 667, 802, 1070
MvnI CGCG 2 cut(s) 134, 299
MwoI GCNNNNNNNGC 4 cut(s) 176, 352, 817, 929
NaeI GCCGGC 1 cut(s) 119
NdeII GATC 4 cut(s) 91, 211, 472, 1126
NgoMIV GCCGGC 1 cut(s) 117
NlaIII CATG 3 cut(s) 820, 898, 955
NlaIV GGNNCC 3 cut(s) 76, 438, 1092
NmuCI GTSAC 3 cut(s) 608, 645, 1262
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 1 cut(s) 820
PaqCI CACCTGC 1 cut(s) 368
PciSI GCTCTTC 2 cut(s) 399, 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 2 cut(s) 17, 355
PdiI GCCGGC 1 cut(s) 119
PfeI GAWTC 7 cut(s) 65, 185, 235, 457, 502, 1111, 1156
PkrI GCNGC 3 cut(s) 207, 226, 925
PleI GAGTC 2 cut(s) 898, 955
PpsI GAGTC 2 cut(s) 898, 955
Psp124BI GAGCTC 2 cut(s) 411, 1065
Psp6I CCWGG 5 cut(s) 337, 414, 665, 800, 1068
PspGI CCWGG 5 cut(s) 337, 414, 665, 800, 1068
PspN4I GGNNCC 3 cut(s) 76, 438, 1092
PspPI GGNCC 4 cut(s) 74, 463, 723, 1117
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 3 cut(s) 211, 472, 1126
RsaI GTAC 1 cut(s) 682
RsaNI GTAC 1 cut(s) 681
RseI CAYNNNNRTG 2 cut(s) 882, 939
SacI GAGCTC 2 cut(s) 411, 1065
SapI GCTCTTC 2 cut(s) 399, 1053
SaqAI TTAA 2 cut(s) 1296, 1318
SatI GCNGC 3 cut(s) 206, 225, 924
Sau3AI GATC 4 cut(s) 91, 211, 472, 1126
Sau96I GGNCC 4 cut(s) 74, 463, 723, 1117
ScaI AGTACT 1 cut(s) 682
SchI GAGTC 2 cut(s) 899, 956
ScrFI CCNGG 5 cut(s) 339, 416, 667, 802, 1070
SduI GDGCHC 3 cut(s) 411, 709, 1065
SfaNI GCATC 4 cut(s) 355, 364, 650, 1018
SgrAI CRCCGGYG 1 cut(s) 117
SinI GGWCC 4 cut(s) 74, 463, 723, 1117
SmiMI CAYNNNNRTG 2 cut(s) 882, 939
SmlI CTYRAG 3 cut(s) 431, 695, 1085
SmoI CTYRAG 3 cut(s) 431, 695, 1085
SsiI CCGC 3 cut(s) 222, 225, 499
SspI AATATT 1 cut(s) 1000
SspMI CTAG 2 cut(s) 360, 1304
SstI GAGCTC 2 cut(s) 411, 1065
StyD4I CCNGG 5 cut(s) 337, 414, 665, 800, 1068
TaaI ACNGT 2 cut(s) 599, 1253
TaiI ACGT 2 cut(s) 615, 1269
TaqI TCGA 1 cut(s) 986
TaqII GACCGA 1 cut(s) 262
TatI WGTACW 1 cut(s) 680
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 7 cut(s) 65, 185, 235, 457, 502, 1111, 1156
Tru1I TTAA 2 cut(s) 1296, 1318
Tru9I TTAA 2 cut(s) 1296, 1318
TscAI CASTG 6 cut(s) 602, 717, 832, 847, 908, 1256
TseFI GTSAC 3 cut(s) 608, 645, 1262
TseI GCWGC 2 cut(s) 205, 923
Tsp45I GTSAC 3 cut(s) 608, 645, 1262
TspDTI ATGAA 3 cut(s) 17, 322, 771
TspGWI ACGGA 2 cut(s) 228, 249
TspRI CASTG 6 cut(s) 602, 717, 832, 847, 908, 1256
VneI GTGCAC 1 cut(s) 705
VpaK11BI GGWCC 4 cut(s) 74, 463, 723, 1117
XapI RAATTY 1 cut(s) 51
XbaI TCTAGA 1 cut(s) 359
XceI RCATGY 1 cut(s) 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 717
XspI CTAG 2 cut(s) 360, 1304
ZrmI AGTACT 1 cut(s) 682
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.