Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000477

Physical Location & Seq

Genomic Coordinates Reverse (-)

5221679 .. 5224553

Gene Structure 2875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0059800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGAATCGACGGTGCCTCCAACTCCTGACCCGCCGCGTCTCCGCCTTATTCTCAGCCAACCCTCCATTCCACACCCTCTCAACCCCACCTCCTCCCCTCTCTACCCATCAACCCCTCATCTCCAACTCCCCACTCGTTTTCACCCCCCATTGGTCCGCCCACACCCGCCATTTCTCGTCGGACCGAAACGACGACGTAAATGAGGACAGTCAAGACGACGACGACGACGATGATGAAATTGGGTACAGTAGTGACGACGGGAGTTTATCCAAGGGTGGTGGGTCGAAAAGAGAGTACACGGCGGAGGAGATGGAGGCGGAGGCGGCGGGTATTGGGTACAAAGTGGTTGGGCCGCTTGAGAAGACTGATGATGGGGTTTTCAAGCCCTATGAACCCGTTTTCGCTGTCATTCAGATTGGTTCGCATCAGTTCAAAGTTAGTAATGGGGACTCCATTTTCACTGAAAGATTGAAATTTTGCGAGGTCAATGATAAGTTGATATTGAATAAGGTTCTCTTGGTGGGCACAAGTAGTCAGACAATGATCGGCAGGCCAATAGTTCCCGATGCAGCAGTTCATGCAGTTGTTGAAGAGCATGCATTAGATGCAAAGGTACTTATTTTTAAGAAAAAGAGGAGGAAGAATTACCGTCGGACCAAAGGTCATCGCCAAGAATTAACCAAGTTGAGGATTATTGATATTCAAGGGATTCAGAAACCAGAACCTGTAGTCACCGAAAAACCTTCAAAGGCACCTGGTAAGAAGCCAGAAAAGGTTGCAGTTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

264

Amino Acids

29.26

Weight (kDa)

7.13

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	135 - 235	6.4e-32	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31120 AT2G35060 AT2G35060 AT2G35060 AT2G35060 AT4G19960 AT4G19960 AT4G19960 AT4G19960
fragaria_vesca	FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12500 FvH4_3g12501 FvH4_3g12501 FvH4_3g12502 FvH4_3g12502 FvH4_3g12502
malus_domestica	MD05G1249700.v1.1 MD05G1249800.v1.1 MD10G1230100.v1.1 MD10G1230400.v1.1
prunus_persica	Prupe.4G114000_v2.0.a1 Prupe.4G114000_v2.0.a1 Prupe.4G114000_v2.0.a1 Prupe.4G114200_v2.0.a1 Prupe.4G114200_v2.0.a1 Prupe.4G114200_v2.0.a1 Prupe.4G114300_v2.0.a1
pyrus_communis	pycom05g22700 pycom05g22730 pycom10g19380 pycom10g19390 pycom10g19400
rosa_chinensis	RchiOBHm_Chr5g0020451 RchiOBHm_Chr5g0020461 RchiOBHm_Chr5g0020471 RchiOBHm_Chr5g0020491
rosa_laevigata	RLG00000032531 RLG00000032532 RLG00000032533 RLG00000032534
rosa_multiflora	Rmu_sc0000033.1_g000001 Rmu_sc0000033.1_g000004 Rmu_sc0009651.1_g000001 Rmu_sc0009745.1_g000016 Rmu_sc0030432.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057790 Rroxscaffold_1G00057800 Rroxscaffold_1G00057810 Rroxscaffold_1G00057830
rosa_rugosa	Rorug05G0059500 Rorug05G0059500 Rorug05G0059500 Rorug05G0059500 Rorug05G0059600 Rorug05G0059700 Rorug05G0059800 Rorug05G0059900 Rorug05G0060000 Rorug05G0060100
rosa_samantha	Rh5AG150600 Rh5AG150700 Rh5AG150800 Rh5AG150900 Rh5BG149500 Rh5BG149800 Rh5BG149900 Rh5BG150000 Rh5CG161100 Rh5CG161200 Rh5CG161400 Rh5DG149100 Rh5DG149200 Rh5DG149300 Rh5DG149400
rosa_wichuraiana	Rw5G013300 Rw5G013310 Rw5G013320 Rw5G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	15, 754
AccII	CGCG	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	4 cut(s)	248, 299, 341, 618
AfiI	CCNNNNNNNGG	2 cut(s)	153, 690
AgsI	TTSAA	7 cut(s)	385, 436, 475, 508, 593, 707, 750
AhdI	GACNNNNNGTC	1 cut(s)	663
AjnI	CCWGG	1 cut(s)	757
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
Alw26I	GTCTC	1 cut(s)	46
AlwNI	CAGNNNCTG	2 cut(s)	728, 788
AoxI	GGCC	2 cut(s)	353, 554
ApeKI	GCWGC	2 cut(s)	572, 788
ApoI	RAATTY	1 cut(s)	476
AspS9I	GGNCC	4 cut(s)	156, 184, 353, 657
AsuHPI	GGTGA	2 cut(s)	136, 727
AvaII	GGWCC	3 cut(s)	156, 184, 657
BaeGI	GKGCMC	1 cut(s)	530
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BanI	GGYRCC	2 cut(s)	15, 754
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	584, 775
BccI	CCATC	3 cut(s)	117, 307, 368
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	759
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	729
BisI	GCNGC	5 cut(s)	37, 327, 356, 573, 789
BlsI	GCNGC	5 cut(s)	38, 328, 357, 574, 790
Bme1390I	CCNGG	1 cut(s)	759
Bme18I	GGWCC	3 cut(s)	156, 184, 657
BmeRI	GACNNNNNGTC	1 cut(s)	663
BmgT120I	GGNCC	4 cut(s)	156, 184, 353, 657
BmiI	GGNNCC	2 cut(s)	17, 756
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	3 cut(s)	436, 559, 598
BpiI	GAAGAC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 690
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	153, 690
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	3 cut(s)	84, 323, 652
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	2 cut(s)	584, 775
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	355, 556
BshNI	GGYRCC	2 cut(s)	15, 754
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	153, 690
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	355, 556
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	1 cut(s)	546
BspANI	GGCC	2 cut(s)	355, 556
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	17, 756
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	2 cut(s)	15, 754
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	4 cut(s)	15, 212, 251, 653
Bst6I	CTCTTC	1 cut(s)	588
BstAPI	GCANNNNNTGC	3 cut(s)	581, 608, 788
BstC8I	GCNNGC	2 cut(s)	554, 600
BstDEI	CTNAG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 581, 608, 788
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	1 cut(s)	530
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	584, 775
BstV2I	GAAGAC	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	355, 556
BtgZI	GCGATG	1 cut(s)	653
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	554, 600
CaiI	CAGNNNCTG	2 cut(s)	728, 788
Cfr13I	GGNCC	4 cut(s)	156, 184, 353, 657
CpoI	CGGWCCG	1 cut(s)	184
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	757
Csp6I	GTAC	4 cut(s)	247, 298, 340, 617
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	2 cut(s)	581, 599
CviJI	RGCY	5 cut(s)	59, 355, 388, 556, 769
CviKI_1	RGCY	5 cut(s)	59, 355, 388, 556, 769
CviQI	GTAC	4 cut(s)	247, 298, 340, 617
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DriI	GACNNNNNGTC	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	588
Eam1105I	GACNNNNNGTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	4 cut(s)	34, 148, 320, 335
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	3 cut(s)	156, 184, 657
EcoRII	CCWGG	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	584, 602
FaiI	YATR	4 cut(s)	393, 582, 600, 793
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	580, 598
FauI	CCCGC	3 cut(s)	41, 176, 322
Fnu4HI	GCNGC	5 cut(s)	37, 327, 356, 573, 789
Fsp4HI	GCNGC	5 cut(s)	37, 327, 356, 573, 789
GluI	GCNGC	5 cut(s)	37, 327, 356, 573, 789
HaeIII	GGCC	2 cut(s)	355, 556
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	584, 602
HinfI	GANTC	3 cut(s)	7, 452, 712
HphI	GGTGA	2 cut(s)	136, 727
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	5 cut(s)	184, 417, 540, 657, 717
Hpy188III	TCNNGA	3 cut(s)	28, 215, 566
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	756
HpyCH4III	ACNGT	4 cut(s)	15, 212, 251, 653
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	6 cut(s)	572, 584, 602, 611, 782, 791
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 581, 608, 788
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	584, 602
Kzo9I	GATC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	588
LpnPI	CCDG	7 cut(s)	41, 538, 735, 741, 744, 771, 783
Lsp1109I	GCAGC	2 cut(s)	584, 775
LweI	GCATC	3 cut(s)	436, 559, 598
MabI	ACCWGGT	1 cut(s)	757
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	254, 733
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MboII	GAAGA	3 cut(s)	376, 605, 655
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	4 cut(s)	240, 476, 646, 677
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	4 cut(s)	46, 150, 162, 635
Mph1103I	ATGCAT	1 cut(s)	604
MseI	TTAA	2 cut(s)	627, 680
MspR9I	CCNGG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	326, 581, 608, 788
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	2 cut(s)	584, 602
NlaIV	GGNNCC	2 cut(s)	17, 756
NmuCI	GTSAC	2 cut(s)	254, 733
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PciSI	GCTCTTC	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 228
PfeI	GAWTC	2 cut(s)	7, 712
PkrI	GCNGC	5 cut(s)	38, 328, 357, 574, 790
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	2 cut(s)	17, 756
PspPI	GGNCC	4 cut(s)	156, 184, 353, 657
PstNI	CAGNNNCTG	2 cut(s)	728, 788
RsaI	GTAC	4 cut(s)	248, 299, 341, 618
RsaNI	GTAC	4 cut(s)	247, 298, 340, 617
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	627, 680
SatI	GCNGC	5 cut(s)	37, 327, 356, 573, 789
Sau3AI	GATC	1 cut(s)	546
Sau96I	GGNCC	4 cut(s)	156, 184, 353, 657
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	759
SduI	GDGCHC	1 cut(s)	530
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	3 cut(s)	436, 559, 598
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	3 cut(s)	156, 184, 657
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	4 cut(s)	240, 476, 646, 677
StyD4I	CCNGG	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	15, 212, 251, 653
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	10, 287
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	240, 476, 646, 677
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	3 cut(s)	39, 329, 358
TfiI	GAWTC	2 cut(s)	7, 712
Tru1I	TTAA	2 cut(s)	627, 680
Tru9I	TTAA	2 cut(s)	627, 680
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	254, 733
TseI	GCWGC	2 cut(s)	572, 788
Tsp45I	GTSAC	2 cut(s)	254, 733
TspDTI	ATGAA	3 cut(s)	252, 408, 569
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	3 cut(s)	156, 184, 657
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	1 cut(s)	602
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.