AT1G01110

IQ-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001398
Physical Location & Seq
Forward (+)
51953 .. 54737
2785 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01110.2

Sequence Viewer

Length: 1095 bp
ATGACATTAAGGTGTATGCAAGCTCTGGTTCGAGTCCAGTCTCGTGTGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCAGTGACTCTCACGCTGTTTTTGAATCTCGCTATCTTCAAGATTTGTCAGATCGACAATCCATGTCAAGAGAAGGAAGCAGCGCCGCGGAAGATTGGGATGACCGACCACACACGATAGACGCAGTGAAAGTGATGCTACAACGGAGACGGGACACAGCATTGAGACATGACAAGACTAATTTGTCACAAGCTTTCTCTCAAAAGATGTGGAGGACGGTTGGTAACCAATCCACGGAAGGACACCACGAGGTAGAACTTGAAGAGGAAAGGCCAAAATGGCTTGACCGGTGGATGGCTACTAGACCGTGGGATAAACGAGCTAGTAGTAGAGCTTCGGTTGACCAAAGGGTTTCAGTTAAAACCGTTGAAATCGACACTTCTCAGCCTTACTCAAGAACAGGAGCAGGAAGCCCGAGTCGTGGCCAAAGACCTAGTTCCCCATCAAGAACTAGCCACCATTACCAATCCCGCAATAATTTCTCAGCCACTCCATCTCCGGCTAAGTCTAGACCAATACTTATTCGGTCAGCTAGTCCACGGTGCCAGAGAGACCCGAGGGAAGACCGTGACCGAGCAGCTTATAGTTATACATCAAACACACCAAGCTTGAGATCCAATTATAGTTTCACAGCTAGGAGTGGATGTAGCATTAGTACCACAATGGTTAATAATGCATCATTGTTGCCTAATTACATGGCGAGTACAGAGTCAGCTAAAGCGAGGATCCGGTCTCATAGTGCACCGAGGCAACGGCCCTCAACTCCCGAGAGGGACCGTGCGGGTTTGGTCAAGAAACGGCTCTCGTATCCGGTACCACCGCCAGCGGAGTATGAGGACAATAATAGCTTAAGGAGTCCAAGCTTTAAGAGTGTGGCTGGTTCACATTTTGGTGGAATGTTAGAGCAGCAATCGAATTACTCTTCATGTTGCACTGAGTCTAACGGTGTTGAGATCTCTCCAGCTTCTACTAGTGACTTTAGGAATTGGCTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

364

Amino Acids

41.21

Weight (kDa)

10.1

Isoelectric Point (pI)

75.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 374 - 478 1.5e-25 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
Acc65I GGTACC 1 cut(s) 910
AccB1I GGYRCC 2 cut(s) 639, 910
AccII CGCG 2 cut(s) 95, 185
AciI CCGC 7 cut(s) 93, 183, 185, 568, 878, 917, 923
AclWI GGATC 3 cut(s) 705, 817, 830
AcoI YGGCCR 1 cut(s) 520
AfaI GTAC 3 cut(s) 754, 802, 912
AfiI CCNNNNNNNGG 3 cut(s) 331, 391, 518
AflII CTTAAG 1 cut(s) 946
AgeI ACCGGT 1 cut(s) 384
AgsI TTSAA 4 cut(s) 122, 137, 359, 467
AhlI ACTAGT 1 cut(s) 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 707, 739
Alw21I GWGCWC 1 cut(s) 841
Alw26I GTCTC 6 cut(s) 45, 75, 238, 256, 642, 834
Alw44I GTGCAC 1 cut(s) 837
AlwI GGATC 3 cut(s) 705, 817, 830
Ama87I CYCGRG 3 cut(s) 511, 652, 863
AoxI GGCC 3 cut(s) 368, 520, 851
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 3 cut(s) 177, 674, 1003
AsiGI ACCGGT 1 cut(s) 384
Asp718I GGTACC 1 cut(s) 910
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 852, 871
AvaI CYCGRG 3 cut(s) 511, 652, 863
AvaII GGWCC 1 cut(s) 871
BaeGI GKGCMC 1 cut(s) 841
BalI TGGCCA 1 cut(s) 522
BamHI GGATCC 1 cut(s) 822
BanI GGYRCC 2 cut(s) 639, 910
BarI GAAGNNNNNNTAC 2 cut(s) 415, 447
BauI CACGAG 2 cut(s) 42, 344
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 841
BbvI GCAGC 3 cut(s) 189, 686, 1015
BccI CCATC 3 cut(s) 385, 547, 598
BceAI ACGGC 2 cut(s) 866, 911
BciVI GTATCC 1 cut(s) 915
BcoDI GTCTC 6 cut(s) 45, 75, 238, 256, 642, 834
BcuI ACTAGT 1 cut(s) 1067
BfaI CTAG 8 cut(s) 399, 420, 531, 549, 606, 630, 732, 1068
BfoI RGCGCY 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 946
BfuI GTATCC 1 cut(s) 915
BglI GCCNNNNNGGC 1 cut(s) 376
BglII AGATCT 1 cut(s) 1050
BisI GCNGC 4 cut(s) 178, 183, 675, 1004
BlsI GCNGC 4 cut(s) 179, 184, 676, 1005
Bme18I GGWCC 1 cut(s) 871
BmeT110I CYCGRG 3 cut(s) 511, 652, 863
BmgT120I GGNCC 2 cut(s) 852, 871
BmiI GGNNCC 4 cut(s) 641, 824, 872, 912
BmsI GCATC 2 cut(s) 222, 782
BoxI GACNNNNGTC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 1041
BpuEI CTTGAG 2 cut(s) 475, 727
BsaI GGTCTC 2 cut(s) 642, 834
BsaJI CCNNGG 6 cut(s) 183, 330, 404, 635, 653, 842
BsaWI WCCGGW 3 cut(s) 384, 825, 907
BsaXI ACNNNNNCTCC 4 cut(s) 577, 607, 727, 757
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 391, 518
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 37
BseDI CCNNGG 6 cut(s) 183, 330, 404, 635, 653, 842
BseGI GGATG 3 cut(s) 202, 396, 746
BseLI CCNNNNNNNGG 3 cut(s) 331, 391, 518
BseMII CTCAG 3 cut(s) 494, 594, 1023
BseNI ACTGG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 3 cut(s) 189, 686, 1015
Bsh1236I CGCG 2 cut(s) 95, 185
BshFI GGCC 3 cut(s) 370, 522, 853
BshNI GGYRCC 2 cut(s) 639, 910
BshTI ACCGGT 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 841
BsiHKCI CYCGRG 3 cut(s) 511, 652, 863
BsiSI CCGG 4 cut(s) 385, 596, 826, 908
BslFI GGGAC 2 cut(s) 263, 884
BslI CCNNNNNNNGG 3 cut(s) 331, 391, 518
BsmAI GTCTC 6 cut(s) 45, 75, 238, 256, 642, 834
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 263, 884
BsnI GGCC 3 cut(s) 370, 522, 853
Bso31I GGTCTC 2 cut(s) 642, 834
BsoBI CYCGRG 3 cut(s) 511, 652, 863
Bsp1286I GDGCHC 1 cut(s) 841
Bsp143I GATC 4 cut(s) 148, 710, 822, 1050
BspACI CCGC 7 cut(s) 93, 183, 185, 568, 878, 917, 923
BspANI GGCC 3 cut(s) 370, 522, 853
BspCNI CTCAG 3 cut(s) 493, 593, 1024
BspFNI CGCG 2 cut(s) 95, 185
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 4 cut(s) 641, 824, 872, 912
BspPI GGATC 3 cut(s) 705, 817, 830
BspT107I GGYRCC 2 cut(s) 639, 910
BspTI CTTAAG 1 cut(s) 946
BspTNI GGTCTC 2 cut(s) 642, 834
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 6 cut(s) 183, 330, 404, 635, 653, 842
BssMI GATC 4 cut(s) 148, 710, 822, 1050
BssSI CACGAG 2 cut(s) 42, 344
Bst2BI CACGAG 2 cut(s) 42, 344
Bst4CI ACNGT 8 cut(s) 80, 316, 405, 463, 639, 665, 875, 1043
Bst6I CTCTTC 2 cut(s) 354, 1024
BstAFI CTTAAG 1 cut(s) 946
BstC8I GCNNGC 2 cut(s) 21, 921
BstDEI CTNAG 5 cut(s) 480, 580, 600, 1032, 1088
BstDSI CCRYGG 4 cut(s) 183, 330, 404, 635
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 3 cut(s) 202, 396, 746
BstFNI CGCG 2 cut(s) 95, 185
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 4 cut(s) 151, 713, 825, 1053
BstMAI GTCTC 6 cut(s) 45, 75, 238, 256, 642, 834
BstMBI GATC 4 cut(s) 148, 710, 822, 1050
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstPAI GACNNNNGTC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 841
BstUI CGCG 2 cut(s) 95, 185
BstV1I GCAGC 3 cut(s) 189, 686, 1015
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 3 cut(s) 710, 822, 1050
BstYI RGATCY 3 cut(s) 710, 822, 1050
BsuI GTATCC 1 cut(s) 915
BsuRI GGCC 3 cut(s) 370, 522, 853
BtgI CCRYGG 4 cut(s) 183, 330, 404, 635
BtsCI GGATG 3 cut(s) 202, 396, 746
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 106, 228, 1029
Cac8I GCNNGC 2 cut(s) 21, 921
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 2 cut(s) 852, 871
Cfr42I CCGCGG 1 cut(s) 186
CseI GACGC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 753, 801, 911
CspAI ACCGGT 1 cut(s) 384
CspCI CAANNNNNGTGG 2 cut(s) 287, 322
CviAII CATG 5 cut(s) 74, 160, 266, 793, 1023
CviQI GTAC 3 cut(s) 753, 801, 911
DdeI CTNAG 5 cut(s) 480, 580, 600, 1032, 1088
DpnI GATC 4 cut(s) 150, 712, 824, 1052
DpnII GATC 4 cut(s) 148, 710, 822, 1050
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 2 cut(s) 354, 1024
EarI CTCTTC 2 cut(s) 354, 1024
Eco31I GGTCTC 2 cut(s) 642, 834
Eco47I GGWCC 1 cut(s) 871
Eco88I CYCGRG 3 cut(s) 511, 652, 863
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 775
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 5 cut(s) 77, 163, 269, 796, 1026
FaqI GGGAC 2 cut(s) 263, 884
FatI CATG 5 cut(s) 73, 159, 265, 792, 1022
FauI CCCGC 2 cut(s) 575, 871
Fnu4HI GCNGC 4 cut(s) 178, 183, 675, 1004
FokI GGATG 3 cut(s) 209, 403, 753
Fsp4HI GCNGC 4 cut(s) 178, 183, 675, 1004
FspBI CTAG 8 cut(s) 399, 420, 531, 549, 606, 630, 732, 1068
GlaI GCGC 1 cut(s) 181
GluI GCNGC 4 cut(s) 178, 183, 675, 1004
GsuI CTGGAG 1 cut(s) 1041
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 3 cut(s) 370, 522, 853
HapII CCGG 4 cut(s) 385, 596, 826, 908
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 182
Hin1II CATG 5 cut(s) 77, 163, 269, 796, 1026
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 3 cut(s) 288, 703, 958
HinfI GANTC 7 cut(s) 33, 104, 122, 514, 806, 952, 1034
HpaII CCGG 4 cut(s) 385, 596, 826, 908
Hpy166II GTNNAC 4 cut(s) 439, 635, 839, 980
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 8 cut(s) 74, 137, 165, 492, 543, 606, 863, 889
Hpy8I GTNNAC 4 cut(s) 439, 635, 839, 980
HpyAV CCTTC 2 cut(s) 164, 329
HpyCH4III ACNGT 8 cut(s) 80, 316, 405, 463, 639, 665, 875, 1043
HpyCH4V TGCA 4 cut(s) 19, 773, 839, 1029
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 5 cut(s) 480, 580, 600, 1032, 1088
Hsp92II CATG 5 cut(s) 77, 163, 269, 796, 1026
HspAI GCGC 1 cut(s) 180
KpnI GGTACC 1 cut(s) 914
KspI CCGCGG 1 cut(s) 186
Kzo9I GATC 4 cut(s) 148, 710, 822, 1050
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 3 cut(s) 189, 686, 1015
LweI GCATC 2 cut(s) 222, 782
MaeI CTAG 8 cut(s) 399, 420, 531, 549, 606, 630, 732, 1068
MaeIII GTNAC 5 cut(s) 101, 282, 320, 665, 1070
MalI GATC 4 cut(s) 150, 712, 824, 1052
MboI GATC 4 cut(s) 148, 710, 822, 1050
MboII GAAGA 5 cut(s) 125, 200, 371, 671, 1011
MflI RGATCY 3 cut(s) 710, 822, 1050
MhlI GDGCHC 1 cut(s) 841
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 6 cut(s) 277, 574, 715, 787, 1012, 1081
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 6 cut(s) 42, 98, 523, 815, 961, 1043
MnlI CCTC 9 cut(s) 303, 340, 355, 648, 813, 837, 861, 865, 925
Mox20I TGGCCA 1 cut(s) 522
Mph1103I ATGCAT 1 cut(s) 775
MscI TGGCCA 1 cut(s) 522
MseI TTAA 5 cut(s) 8, 456, 765, 947, 963
MslI CAYNNNNRTG 2 cut(s) 10, 987
Msp20I TGGCCA 1 cut(s) 522
MspA1I CMGCKG 2 cut(s) 185, 923
MspCI CTTAAG 1 cut(s) 946
MspI CCGG 4 cut(s) 385, 596, 826, 908
MvnI CGCG 2 cut(s) 95, 185
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 4 cut(s) 148, 710, 822, 1050
NlaIII CATG 5 cut(s) 77, 163, 269, 796, 1026
NlaIV GGNNCC 4 cut(s) 641, 824, 872, 912
NmuCI GTSAC 4 cut(s) 101, 282, 665, 1070
NsiI ATGCAT 1 cut(s) 775
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 1 cut(s) 122
PinAI ACCGGT 1 cut(s) 384
PkrI GCNGC 4 cut(s) 179, 184, 676, 1005
PleI GAGTC 6 cut(s) 41, 98, 522, 814, 960, 1042
PpsI GAGTC 6 cut(s) 41, 98, 522, 814, 960, 1042
PshAI GACNNNNGTC 1 cut(s) 81
PspEI GGTNACC 1 cut(s) 320
PspN4I GGNNCC 4 cut(s) 641, 824, 872, 912
PspPI GGNCC 2 cut(s) 852, 871
PsuI RGATCY 3 cut(s) 710, 822, 1050
RsaI GTAC 3 cut(s) 754, 802, 912
RsaNI GTAC 3 cut(s) 753, 801, 911
RseI CAYNNNNRTG 2 cut(s) 10, 987
SacII CCGCGG 1 cut(s) 186
SaqAI TTAA 5 cut(s) 8, 456, 765, 947, 963
SatI GCNGC 4 cut(s) 178, 183, 675, 1004
Sau3AI GATC 4 cut(s) 148, 710, 822, 1050
Sau96I GGNCC 2 cut(s) 852, 871
SchI GAGTC 6 cut(s) 42, 98, 523, 815, 961, 1043
SduI GDGCHC 1 cut(s) 841
SfaNI GCATC 2 cut(s) 222, 782
Sfr303I CCGCGG 1 cut(s) 186
SgrBI CCGCGG 1 cut(s) 186
SinI GGWCC 1 cut(s) 871
SmiMI CAYNNNNRTG 2 cut(s) 10, 987
SmlI CTYRAG 3 cut(s) 490, 706, 946
SmoI CTYRAG 3 cut(s) 490, 706, 946
SpeI ACTAGT 1 cut(s) 1067
Sse9I AATT 6 cut(s) 277, 574, 715, 787, 1012, 1081
SsiI CCGC 7 cut(s) 93, 183, 185, 568, 878, 917, 923
SspMI CTAG 8 cut(s) 399, 420, 531, 549, 606, 630, 732, 1068
TaaI ACNGT 8 cut(s) 80, 316, 405, 463, 639, 665, 875, 1043
TaqI TCGA 4 cut(s) 31, 151, 471, 1010
TaqII GACCGA 3 cut(s) 216, 612, 684
TasI AATT 6 cut(s) 277, 574, 715, 787, 1012, 1081
TatI WGTACW 1 cut(s) 800
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 5 cut(s) 8, 456, 765, 947, 963
Tru9I TTAA 5 cut(s) 8, 456, 765, 947, 963
TscAI CASTG 3 cut(s) 106, 228, 1036
TseFI GTSAC 4 cut(s) 101, 282, 665, 1070
TseI GCWGC 3 cut(s) 177, 674, 1003
Tsp45I GTSAC 4 cut(s) 101, 282, 665, 1070
TspDTI ATGAA 1 cut(s) 1011
TspGWI ACGGA 2 cut(s) 256, 347
TspRI CASTG 3 cut(s) 106, 228, 1036
Vha464I CTTAAG 1 cut(s) 946
VneI GTGCAC 1 cut(s) 837
VpaK11BI GGWCC 1 cut(s) 871
XbaI TCTAGA 1 cut(s) 605
XspI CTAG 8 cut(s) 399, 420, 531, 549, 606, 630, 732, 1068
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.