Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8094202.1

Orthogroup ID

OG0001398

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 595

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8094202.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 394 bp

gcgaggagagctcttcgggcgttgaaggcgctggtgaagcttcaagcattagtgagaggccacaatgttagaaagcgagcaaagacgactctacaatgcatgcaagcactggttcgagtccaagctcgggttcttgaccaacgaactaagaggctttcgcatcaaggaagcctagattccatgttcagtacagatcatcccaattctagcttatgggggtcacatttctcagacaggaagtccatttcaagagaagaagaaagtagtaccttggatgatgatgaggatgattgggtccattgggatgatctccagccaaaaacactagagcatattcaagccatgttgcagaaagcgaaaaaagctgcagcatcaaatcgcgaaaggactactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

131

Amino Acids

15.04

Weight (kDa)

9.99

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01110 AT1G01110 AT4G00820
fragaria_vesca	FvH4_5g10710 FvH4_7g17520 FvH4_7g17520 FvH4_7g17520 FvH4_7g32790
malus_domestica	MD01G1087900.v1.1 MD01G1227500.v1.1 MD06G1121100.v1.1 MD07G1158100.v1.1 MD07G1170800.v1.1 MD07G1297900.v1.1 MD14G1137700.v1.1
prunus_persica	Prupe.2G196500_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.5G131700_v2.0.a1
pyrus_communis	pycom01g11180 pycom07g15460 pycom07g27030 pycom14g11290
rosa_chinensis	RchiOBHm_Chr1g0360961 RchiOBHm_Chr1g0382751 RchiOBHm_Chr7g0187421
rosa_laevigata	RLG00000004782 RLG00000026164 RLG00000027766
rosa_multiflora	Rmu_co8094202.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267450 Rroxscaffold_4G00277940 Rroxscaffold_4G00295660
rosa_rugosa	Rorug01G0283900 Rorug01G0284000 Rorug01G0435500 Rorug06G0481500
rosa_samantha	Rh1AG295200 Rh1AG460700 Rh1BG260000 Rh1BG417500 Rh1CG277400 Rh1CG431100 Rh1DG290000 Rh1DG449700 Rh7AG086000 Rh7BG087500 Rh7CG086900 Rh7DG088500
rosa_wichuraiana	Rw1G026120 Rw1G041090 Rw7G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	190, 268
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	25, 44, 249, 338
AhdI	GACNNNNNGTC	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	5 cut(s)	11, 40, 125, 210, 365
AluI	AGCT	5 cut(s)	11, 40, 125, 210, 365
Alw21I	GWGCWC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	365, 368
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	352, 380
BfaI	CTAG	3 cut(s)	173, 207, 326
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	2 cut(s)	366, 369
BlsI	GCNGC	2 cut(s)	367, 370
Bme18I	GGWCC	1 cut(s)	295
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	296
BmsI	GCATC	2 cut(s)	169, 380
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	4 cut(s)	196, 280, 292, 310
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	352, 380
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	193, 307
Bsp68I	TCGCGA	1 cut(s)	381
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	296
BspMAI	CTGCAG	1 cut(s)	370
BspQI	GCTCTTC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	193, 307
BssT1I	CCWWGG	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	78, 101, 105
BstDEI	CTNAG	2 cut(s)	147, 229
BstF5I	GGATG	4 cut(s)	196, 280, 292, 310
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	196, 310
BstMBI	GATC	2 cut(s)	193, 307
BstMWI	GCNNNNNNNGC	5 cut(s)	8, 17, 26, 37, 362
BstNSI	RCATGY	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	352, 380
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	196, 280, 292, 310
BtsIMutI	CAGTG	1 cut(s)	107
BtuMI	TCGCGA	1 cut(s)	381
Cac8I	GCNNGC	3 cut(s)	78, 101, 105
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	189, 267
CviAII	CATG	3 cut(s)	100, 181, 343
CviQI	GTAC	2 cut(s)	189, 267
DdeI	CTNAG	2 cut(s)	147, 229
DpnI	GATC	2 cut(s)	195, 309
DpnII	GATC	2 cut(s)	193, 307
DriI	GACNNNNNGTC	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	18
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	3 cut(s)	103, 184, 346
FaiI	YATR	5 cut(s)	101, 182, 214, 333, 344
FatI	CATG	3 cut(s)	99, 180, 342
Fnu4HI	GCNGC	2 cut(s)	366, 369
FokI	GGATG	4 cut(s)	183, 287, 299, 317
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	366, 369
FspBI	CTAG	3 cut(s)	173, 207, 326
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	2 cut(s)	366, 369
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	103, 184, 346
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	3 cut(s)	88, 117, 176
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	134, 249, 380
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	99, 103, 349, 368
HpyF10VI	GCNNNNNNNGC	5 cut(s)	8, 17, 26, 37, 362
HpyF3I	CTNAG	2 cut(s)	147, 229
Hsp92II	CATG	3 cut(s)	103, 184, 346
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	193, 307
LguI	GCTCTTC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	17, 95, 220, 326
Lsp1109I	GCAGC	2 cut(s)	352, 380
LweI	GCATC	2 cut(s)	169, 380
MaeI	CTAG	3 cut(s)	173, 207, 326
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	2 cut(s)	195, 309
MboI	GATC	2 cut(s)	193, 307
MboII	GAAGA	3 cut(s)	5, 266, 269
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	2 cut(s)	82, 126
MnlI	CCTC	3 cut(s)	50, 144, 277
Mph1103I	ATGCAT	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	8, 17, 26, 37, 362
NdeII	GATC	2 cut(s)	193, 307
NlaIII	CATG	3 cut(s)	103, 184, 346
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	219
NruI	TCGCGA	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	101
NspI	RCATGY	1 cut(s)	103
PaeI	GCATGC	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	367, 370
PleI	GAGTC	2 cut(s)	82, 125
PpsI	GAGTC	2 cut(s)	82, 125
Psp124BI	GAGCTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	370
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	2 cut(s)	190, 268
RsaNI	GTAC	2 cut(s)	189, 267
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	18
SatI	GCNGC	2 cut(s)	366, 369
Sau3AI	GATC	2 cut(s)	193, 307
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	2 cut(s)	82, 126
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	6 cut(s)	13, 42, 127, 212, 272, 367
SfaNI	GCATC	2 cut(s)	169, 380
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	103
Sse9I	AATT	1 cut(s)	202
SspMI	CTAG	3 cut(s)	173, 207, 326
SstI	GAGCTC	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	270
TaqI	TCGA	1 cut(s)	115
TasI	AATT	1 cut(s)	202
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	176
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	2 cut(s)	365, 368
Tsp45I	GTSAC	1 cut(s)	219
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	295
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	3 cut(s)	173, 207, 326
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.