Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001398

Physical Location & Seq

Genomic Coordinates Reverse (-)

23009622 .. 23012603

Gene Structure 2982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1158100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGGGGAAGAAGGGAGGCACTTCCTGGTTGACTGCTGTCAAAAGGGCTTTCAGATCTCCCACTAAAGACGACGAAGATCAAAAGAAAAGAGAGAAGCGAAGGTGGATTTTCAGAAAACCCACAAATTTAAACCAACAAGAAACCGTGACCCAAGAAGCAGCTGCGGAGCAAAAGCATGTTTCAACAGCTGCGGAGCAAAAGCATATTTCAGCAGCTGCAGAGCAAAAGCACGTGCTTGCTGTGGCGGTGGCTACGGCGGAAGCGGCAATGGCTACTGCCCACGCAGCCGCTGAGGTAGCTCGGCTGACTAGGCCTTCCAATCATGCCAGAGAACACTACTACGCCATTGTTATCCAGACAGCTTTCAGAGGATACTTGGCAAGGAGGGCGCTTCGTGCGCTTAAGGGGCTTGTGAAGTTGCAGGCCTTGGTGAGAGGCCACAATGTGAGGAAGCAAGCAAAGATGACGCTTAAGTGCATGCAGGCTCTGGTTCGGGTGCAGGCTCGGGTGCTCGATCAGCGCACCAGGCTTTCTCACGAAGGCAGCAGACAGTCTGCGTTTAGTGACACCACTAGTAGCGTTTGGGAATCGCGGTATCTTCAAGACATTTCGGATAGGAAATCCATGCATTCTAGAGAGGGAAGTATCATAGCAGACGATTGGGACGAACGTCCTCACAACATTGAGGAAGTAAAAGCCATGTTGCAGCAACGGAAAGAAGCTGCAATGAAGCGTGAGAAATCGTTGTCCCAAGCCTTTTCTCAACAGATATGGAGGAACAGAAGGGCCCCGTCTATGGGAAATGAGGATGAGCTTGAAGAGAGACCGAAATGGCTGGCGCCAAAGCCATGGGAGACCAGAGGAAGACCTTCAACTGACCAGAGAGACCCCATTAAAACAGTCGAAATTGACACCCCTCAGCCTTATTTTAATTTACCACCAAACTACAGAAGATCAAGTGCAAGCCAATACCACCAACACCAACACCAACAACAAAGACCCAGTTCACCAAAACAAAGACCTGGCTCACCAAAACAAAGACCCAGCTCACCACTCCATAGAGATCGAGCCTACCAAAGCCAACCCTTTCATCATCACTCCCCTATCACACCCTCACCATCAAAAACCCGGCCTGTCCTAGTCCGGTCTGCAAGCCCTCGTTGCGTTAGAGAAGATAGAAGCTCCAATGCATCTCAAACTCCAAGTCTTAGGTCCAACTATGTCTACACTGGTGCTGTGCACCAACAACATAGCAGCAGGGCGGGTAGTACAAGCAATAGTAGCATTGCCAATTCTGGTGCTGCATTGCCTAATTACATGGCTGCAACCGAGTCTGCCAAGGCTCGGATACGCTCTCAGAGTGCACCCCGGCAAAGGCTATCTACACCAGACCGGGAACGAGCAGCTGGATCAGCAAAGAAAAGGCTCTCGTTTCCAGCTCCTGATCCTTACGGCCTGGCAATGGGGTATGGAGGTTATGGATACAGCTTGAGGAGTCCAAGCTTTAAGAGTGTGAGTGCATCGCATTTCGGCGTGGAGCAACAGTCTAACTATTCTTCTTGTTGCACTGAGAGTCATGGTGGTGAGATTTCCCCTTCTTCAACTAGTGACCTTAGAAGGTGGTTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

544

Amino Acids

61.11

Weight (kDa)

10.4

Isoelectric Point (pI)

72.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4005	PF13178	385 - 491	2.7e-28	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01110 AT1G01110 AT4G00820
fragaria_vesca	FvH4_5g10710 FvH4_7g17520 FvH4_7g17520 FvH4_7g17520 FvH4_7g32790
malus_domestica	MD01G1087900.v1.1 MD01G1227500.v1.1 MD06G1121100.v1.1 MD07G1158100.v1.1 MD07G1170800.v1.1 MD07G1297900.v1.1 MD14G1137700.v1.1
prunus_persica	Prupe.2G196500_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.2G317600_v2.0.a1 Prupe.5G131700_v2.0.a1
pyrus_communis	pycom01g11180 pycom07g15460 pycom07g27030 pycom14g11290
rosa_chinensis	RchiOBHm_Chr1g0360961 RchiOBHm_Chr1g0382751 RchiOBHm_Chr7g0187421
rosa_laevigata	RLG00000004782 RLG00000026164 RLG00000027766
rosa_multiflora	Rmu_co8094202.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267450 Rroxscaffold_4G00277940 Rroxscaffold_4G00295660
rosa_rugosa	Rorug01G0283900 Rorug01G0284000 Rorug01G0435500 Rorug06G0481500
rosa_samantha	Rh1AG295200 Rh1AG460700 Rh1BG260000 Rh1BG417500 Rh1CG277400 Rh1CG431100 Rh1DG290000 Rh1DG449700 Rh7AG086000 Rh7BG087500 Rh7CG086900 Rh7DG088500
rosa_wichuraiana	Rw1G026120 Rw1G041090 Rw7G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	838
AccI	GTMKAC	1 cut(s)	1224
AccII	CGCG	1 cut(s)	592
AciI	CCGC	8 cut(s)	164, 191, 245, 257, 263, 288, 592, 1262
AclWI	GGATC	2 cut(s)	1417, 1439
AcsI	RAATTY	1 cut(s)	124
AcvI	CACGTG	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	839
AdeI	CACNNNGTG	1 cut(s)	445
AfaI	GTAC	1 cut(s)	1270
AfiI	CCNNNNNNNGG	5 cut(s)	796, 797, 1344, 1374, 1462
AflII	CTTAAG	2 cut(s)	401, 470
AgsI	TTSAA	5 cut(s)	183, 602, 818, 873, 1602
AhlI	ACTAGT	2 cut(s)	572, 1604
AjnI	CCWGG	4 cut(s)	23, 524, 1021, 1455
Alw21I	GWGCWC	3 cut(s)	513, 1242, 1366
Alw26I	GTCTC	3 cut(s)	817, 848, 879
Alw44I	GTGCAC	2 cut(s)	1238, 1362
AlwI	GGATC	2 cut(s)	1417, 1439
AlwNI	CAGNNNCTG	4 cut(s)	215, 290, 487, 1442
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	6 cut(s)	311, 423, 436, 786, 1130, 1453
ApaI	GGGCCC	1 cut(s)	790
ApaLI	GTGCAC	2 cut(s)	1238, 1362
ApoI	RAATTY	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	1189, 1221
Asp700I	GAANNNNTTC	1 cut(s)	868
AspLEI	GCGC	4 cut(s)	391, 400, 522, 841
AspS9I	GGNCC	3 cut(s)	786, 787, 1212
AsuC2I	CCSGG	3 cut(s)	1129, 1369, 1394
AsuHPI	GGTGA	6 cut(s)	442, 999, 1020, 1041, 1107, 1595
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	1212
BaeGI	GKGCMC	3 cut(s)	790, 1242, 1366
BanI	GGYRCC	1 cut(s)	838
BanII	GRGCYC	1 cut(s)	790
BbrPI	CACGTG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	871
Bbv12I	GWGCWC	3 cut(s)	513, 1242, 1366
BbvCI	CCTCAGC	2 cut(s)	291, 918
BccI	CCATC	1 cut(s)	1126
BceAI	ACGGC	2 cut(s)	270, 1468
BciT130I	CCWGG	4 cut(s)	25, 526, 1023, 1457
BciVI	GTATCC	3 cut(s)	365, 1341, 1475
BcnI	CCSGG	3 cut(s)	1129, 1369, 1394
BcoDI	GTCTC	3 cut(s)	817, 848, 879
BcuI	ACTAGT	2 cut(s)	572, 1604
BfaI	CTAG	5 cut(s)	309, 573, 633, 1139, 1605
BfmI	CTRYAG	2 cut(s)	216, 946
BfoI	RGCGCY	2 cut(s)	392, 842
BfrI	CTTAAG	2 cut(s)	401, 470
BfuI	GTATCC	3 cut(s)	365, 1341, 1475
BglII	AGATCT	1 cut(s)	53
Bme1390I	CCNGG	7 cut(s)	25, 526, 1023, 1129, 1369, 1394, 1457
Bme18I	GGWCC	1 cut(s)	1212
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	786, 787, 1212
BmiI	GGNNCC	3 cut(s)	788, 789, 840
BmrFI	CCNGG	7 cut(s)	25, 526, 1023, 1129, 1369, 1394, 1457
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	2 cut(s)	1199, 1529
BmuI	ACTGGG	1 cut(s)	996
BoxI	GACNNNNGTC	2 cut(s)	35, 669
BpiI	GAAGAC	1 cut(s)	871
Bpu10I	CCTNAGC	2 cut(s)	291, 918
BpuEI	CTTGAG	1 cut(s)	1510
BpuMI	CCSGG	3 cut(s)	1129, 1369, 1394
BsaAI	YACGTR	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	839
BsaI	GGTCTC	3 cut(s)	817, 848, 879
BsaJI	CCNNGG	4 cut(s)	426, 848, 1338, 1367
BsaWI	WCCGGW	1 cut(s)	1143
BsaXI	ACNNNNNCTCC	2 cut(s)	1529, 1559
Bsc4I	CCNNNNNNNGG	5 cut(s)	796, 797, 1344, 1374, 1462
Bse1I	ACTGG	2 cut(s)	1002, 1234
Bse3DI	GCAATG	5 cut(s)	273, 732, 1284, 1304, 1467
BseBI	CCWGG	4 cut(s)	25, 526, 1023, 1457
BseDI	CCNNGG	4 cut(s)	426, 848, 1338, 1367
BseGI	GGATG	1 cut(s)	814
BseLI	CCNNNNNNNGG	5 cut(s)	796, 797, 1344, 1374, 1462
BseMI	GCAATG	5 cut(s)	273, 732, 1284, 1304, 1467
BseMII	CTCAG	4 cut(s)	282, 932, 1370, 1560
BseNI	ACTGG	2 cut(s)	1002, 1234
BseRI	GAGGAG	1 cut(s)	1507
BseSI	GKGCMC	3 cut(s)	790, 1242, 1366
BseYI	CCCAGC	1 cut(s)	1043
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	592
BshFI	GGCC	6 cut(s)	313, 425, 438, 788, 1132, 1455
BshNI	GGYRCC	1 cut(s)	838
BsiHKAI	GWGCWC	3 cut(s)	513, 1242, 1366
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	4 cut(s)	1129, 1144, 1369, 1393
BslFI	GGGAC	2 cut(s)	677, 733
BslI	CCNNNNNNNGG	5 cut(s)	796, 797, 1344, 1374, 1462
BsmAI	GTCTC	3 cut(s)	817, 848, 879
BsmFI	GGGAC	2 cut(s)	677, 733
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	6 cut(s)	313, 425, 438, 788, 1132, 1455
Bso31I	GGTCTC	3 cut(s)	817, 848, 879
BsoBI	CYCGRG	1 cut(s)	504
Bsp120I	GGGCCC	1 cut(s)	786
Bsp1286I	GDGCHC	4 cut(s)	513, 790, 1242, 1366
Bsp143I	GATC	7 cut(s)	53, 76, 514, 953, 1063, 1409, 1444
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	8 cut(s)	164, 191, 245, 257, 263, 288, 592, 1262
BspANI	GGCC	6 cut(s)	313, 425, 438, 788, 1132, 1455
BspCNI	CTCAG	4 cut(s)	283, 931, 1369, 1561
BspFNI	CGCG	1 cut(s)	592
BspLI	GGNNCC	3 cut(s)	788, 789, 840
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	2 cut(s)	1417, 1439
BspT107I	GGYRCC	1 cut(s)	838
BspTI	CTTAAG	2 cut(s)	401, 470
BspTNI	GGTCTC	3 cut(s)	817, 848, 879
BsrDI	GCAATG	5 cut(s)	273, 732, 1284, 1304, 1467
BsrI	ACTGG	2 cut(s)	1002, 1234
BssECI	CCNNGG	4 cut(s)	426, 848, 1338, 1367
BssMI	GATC	7 cut(s)	53, 76, 514, 953, 1063, 1409, 1444
BssNI	GRCGYC	1 cut(s)	839
BssT1I	CCWWGG	3 cut(s)	426, 848, 1338
Bst2UI	CCWGG	4 cut(s)	25, 526, 1023, 1457
Bst4CI	ACNGT	4 cut(s)	145, 552, 901, 1545
Bst6I	CTCTTC	1 cut(s)	813
BstACI	GRCGYC	1 cut(s)	839
BstAFI	CTTAAG	2 cut(s)	401, 470
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	9 cut(s)	237, 423, 456, 479, 483, 501, 837, 964, 1153
BstDEI	CTNAG	6 cut(s)	291, 918, 1208, 1356, 1569, 1613
BstDSI	CCRYGG	1 cut(s)	848
BstF5I	GGATG	1 cut(s)	814
BstFNI	CGCG	1 cut(s)	592
BstH2I	RGCGCY	2 cut(s)	392, 842
BstHHI	GCGC	4 cut(s)	391, 400, 522, 841
BstKTI	GATC	7 cut(s)	56, 79, 517, 956, 1066, 1412, 1447
BstMAI	GTCTC	3 cut(s)	817, 848, 879
BstMBI	GATC	7 cut(s)	53, 76, 514, 953, 1063, 1409, 1444
BstNI	CCWGG	4 cut(s)	25, 526, 1023, 1457
BstNSI	RCATGY	2 cut(s)	179, 481
BstPAI	GACNNNNGTC	2 cut(s)	35, 669
BstSCI	CCNGG	7 cut(s)	23, 524, 1021, 1127, 1367, 1392, 1455
BstSFI	CTRYAG	2 cut(s)	216, 946
BstSLI	GKGCMC	3 cut(s)	790, 1242, 1366
BstUI	CGCG	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	871
BstX2I	RGATCY	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	849
BstYI	RGATCY	1 cut(s)	53
BsuI	GTATCC	3 cut(s)	365, 1341, 1475
BsuRI	GGCC	6 cut(s)	313, 425, 438, 788, 1132, 1455
BtgI	CCRYGG	1 cut(s)	848
BtgZI	GCGATG	1 cut(s)	1506
BtsCI	GGATG	1 cut(s)	814
BtsIMutI	CAGTG	2 cut(s)	1227, 1566
Cac8I	GCNNGC	9 cut(s)	237, 423, 456, 479, 483, 501, 837, 964, 1153
CaiI	CAGNNNCTG	4 cut(s)	215, 290, 487, 1442
CfoI	GCGC	4 cut(s)	391, 400, 522, 841
Cfr13I	GGNCC	3 cut(s)	786, 787, 1212
CseI	GACGC	1 cut(s)	475
Csp6I	GTAC	1 cut(s)	1269
CviAII	CATG	8 cut(s)	176, 323, 478, 625, 700, 849, 1318, 1577
CviQI	GTAC	1 cut(s)	1269
DdeI	CTNAG	6 cut(s)	291, 918, 1208, 1356, 1569, 1613
DinI	GGCGCC	1 cut(s)	840
DpnI	GATC	7 cut(s)	55, 78, 516, 955, 1065, 1411, 1446
DpnII	GATC	7 cut(s)	53, 76, 514, 953, 1063, 1409, 1444
DraI	TTTAAA	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
EciI	GGCGGA	1 cut(s)	272
Eco130I	CCWWGG	3 cut(s)	426, 848, 1338
Eco147I	AGGCCT	2 cut(s)	313, 425
Eco24I	GRGCYC	1 cut(s)	790
Eco31I	GGTCTC	3 cut(s)	817, 848, 879
Eco47I	GGWCC	1 cut(s)	1212
Eco72I	CACGTG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	504
EcoO109I	RGGNCCY	2 cut(s)	786, 787
EcoRII	CCWGG	4 cut(s)	23, 524, 1021, 1455
EcoT14I	CCWWGG	3 cut(s)	426, 848, 1338
EcoT22I	ATGCAT	2 cut(s)	630, 1192
EcoT38I	GRGCYC	1 cut(s)	790
EgeI	GGCGCC	1 cut(s)	840
EheI	GGCGCC	1 cut(s)	840
ErhI	CCWWGG	3 cut(s)	426, 848, 1338
FaeI	CATG	8 cut(s)	179, 326, 481, 628, 703, 852, 1321, 1580
FaqI	GGGAC	2 cut(s)	677, 733
FatI	CATG	8 cut(s)	175, 322, 477, 624, 699, 848, 1317, 1576
FauI	CCCGC	1 cut(s)	1255
FblI	GTMKAC	1 cut(s)	1224
FokI	GGATG	1 cut(s)	821
FriOI	GRGCYC	1 cut(s)	790
FspBI	CTAG	5 cut(s)	309, 573, 633, 1139, 1605
GlaI	GCGC	4 cut(s)	390, 399, 521, 840
GsaI	CCCAGC	1 cut(s)	1047
HaeII	RGCGCY	2 cut(s)	392, 842
HaeIII	GGCC	6 cut(s)	313, 425, 438, 788, 1132, 1455
HapII	CCGG	4 cut(s)	1129, 1144, 1369, 1393
HgaI	GACGC	1 cut(s)	475
HhaI	GCGC	4 cut(s)	391, 400, 522, 841
Hin1I	GRCGYC	1 cut(s)	839
Hin1II	CATG	8 cut(s)	179, 326, 481, 628, 703, 852, 1321, 1580
Hin6I	GCGC	4 cut(s)	389, 398, 520, 839
HinP1I	GCGC	4 cut(s)	389, 398, 520, 839
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	1501
HinfI	GANTC	4 cut(s)	587, 1331, 1495, 1573
HpaII	CCGG	4 cut(s)	1129, 1144, 1369, 1393
HphI	GGTGA	6 cut(s)	442, 999, 1020, 1041, 1107, 1595
Hpy166II	GTNNAC	5 cut(s)	30, 1007, 1225, 1240, 1364
Hpy188I	TCNGA	6 cut(s)	53, 113, 368, 613, 1347, 1359
Hpy188III	TCNNGA	5 cut(s)	355, 536, 602, 633, 1442
Hpy8I	GTNNAC	5 cut(s)	30, 1007, 1225, 1240, 1364
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	8 cut(s)	4, 93, 324, 533, 777, 879, 1605, 1611
HpyCH4III	ACNGT	4 cut(s)	145, 552, 901, 1545
HpyCH4IV	ACGT	2 cut(s)	231, 670
HpyF3I	CTNAG	6 cut(s)	291, 918, 1208, 1356, 1569, 1613
HpySE526I	ACGT	2 cut(s)	231, 670
Hsp92I	GRCGYC	1 cut(s)	839
Hsp92II	CATG	8 cut(s)	179, 326, 481, 628, 703, 852, 1321, 1580
HspAI	GCGC	4 cut(s)	389, 398, 520, 839
KasI	GGCGCC	1 cut(s)	838
Kzo9I	GATC	7 cut(s)	53, 76, 514, 953, 1063, 1409, 1444
LmnI	GCTCC	5 cut(s)	166, 193, 1187, 1444, 1537
LweI	GCATC	2 cut(s)	1199, 1529
MaeI	CTAG	5 cut(s)	309, 573, 633, 1139, 1605
MaeII	ACGT	2 cut(s)	231, 670
MaeIII	GTNAC	3 cut(s)	145, 563, 1607
MalI	GATC	7 cut(s)	55, 78, 516, 955, 1065, 1411, 1446
MboI	GATC	7 cut(s)	53, 76, 514, 953, 1063, 1409, 1444
MboII	GAAGA	9 cut(s)	19, 86, 590, 830, 876, 963, 1184, 1548, 1590
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	4 cut(s)	513, 790, 1242, 1366
MluCI	AATT	5 cut(s)	124, 906, 931, 1291, 1312
Mly113I	GGCGCC	1 cut(s)	839
MlyI	GAGTC	3 cut(s)	1340, 1504, 1582
MmeI	TCCRAC	1 cut(s)	1239
Mph1103I	ATGCAT	2 cut(s)	630, 1192
MroXI	GAANNNNTTC	1 cut(s)	868
MseI	TTAA	6 cut(s)	128, 402, 471, 894, 930, 1506
MslI	CAYNNNNRTG	1 cut(s)	1581
MspA1I	CMGCKG	5 cut(s)	161, 188, 215, 290, 1406
MspCI	CTTAAG	2 cut(s)	401, 470
MspI	CCGG	4 cut(s)	1129, 1144, 1369, 1393
MspR9I	CCNGG	7 cut(s)	25, 526, 1023, 1129, 1369, 1394, 1457
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	4 cut(s)	25, 526, 1023, 1457
MvnI	CGCG	1 cut(s)	592
NarI	GGCGCC	1 cut(s)	839
NciI	CCSGG	3 cut(s)	1129, 1369, 1394
NcoI	CCATGG	1 cut(s)	848
NdeII	GATC	7 cut(s)	53, 76, 514, 953, 1063, 1409, 1444
NlaIII	CATG	8 cut(s)	179, 326, 481, 628, 703, 852, 1321, 1580
NlaIV	GGNNCC	3 cut(s)	788, 789, 840
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	3 cut(s)	145, 563, 1607
NsiI	ATGCAT	2 cut(s)	630, 1192
NspI	RCATGY	2 cut(s)	179, 481
PaeI	GCATGC	1 cut(s)	481
PceI	AGGCCT	2 cut(s)	313, 425
PcsI	WCGNNNNNNNCGW	1 cut(s)	663
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	1 cut(s)	587
PleI	GAGTC	3 cut(s)	1339, 1503, 1581
PluTI	GGCGCC	1 cut(s)	842
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
PpsI	GAGTC	3 cut(s)	1339, 1503, 1581
Ppu21I	YACGTR	1 cut(s)	232
PshAI	GACNNNNGTC	2 cut(s)	35, 669
Psp6I	CCWGG	4 cut(s)	23, 524, 1021, 1455
PspCI	CACGTG	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	1043
PspGI	CCWGG	4 cut(s)	23, 524, 1021, 1455
PspN4I	GGNNCC	3 cut(s)	788, 789, 840
PspOMI	GGGCCC	1 cut(s)	786
PspPI	GGNCC	3 cut(s)	786, 787, 1212
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	4 cut(s)	215, 290, 487, 1442
PsuI	RGATCY	1 cut(s)	53
PvuII	CAGCTG	4 cut(s)	161, 188, 215, 1406
RsaI	GTAC	1 cut(s)	1270
RsaNI	GTAC	1 cut(s)	1269
RseI	CAYNNNNRTG	1 cut(s)	1581
SaqAI	TTAA	6 cut(s)	128, 402, 471, 894, 930, 1506
Sau3AI	GATC	7 cut(s)	53, 76, 514, 953, 1063, 1409, 1444
Sau96I	GGNCC	3 cut(s)	786, 787, 1212
SchI	GAGTC	3 cut(s)	1340, 1504, 1582
ScrFI	CCNGG	7 cut(s)	25, 526, 1023, 1129, 1369, 1394, 1457
SduI	GDGCHC	4 cut(s)	513, 790, 1242, 1366
SfaNI	GCATC	2 cut(s)	1199, 1529
SfcI	CTRYAG	2 cut(s)	216, 946
SfoI	GGCGCC	1 cut(s)	840
SinI	GGWCC	1 cut(s)	1212
SmiMI	CAYNNNNRTG	1 cut(s)	1581
SmlI	CTYRAG	3 cut(s)	401, 470, 1489
SmoI	CTYRAG	3 cut(s)	401, 470, 1489
SpeI	ACTAGT	2 cut(s)	572, 1604
SphI	GCATGC	1 cut(s)	481
Sse9I	AATT	5 cut(s)	124, 906, 931, 1291, 1312
SseBI	AGGCCT	2 cut(s)	313, 425
SsiI	CCGC	8 cut(s)	164, 191, 245, 257, 263, 288, 592, 1262
SspDI	GGCGCC	1 cut(s)	838
SspMI	CTAG	5 cut(s)	309, 573, 633, 1139, 1605
StuI	AGGCCT	2 cut(s)	313, 425
StyD4I	CCNGG	7 cut(s)	23, 524, 1021, 1127, 1367, 1392, 1455
StyI	CCWWGG	3 cut(s)	426, 848, 1338
TaaI	ACNGT	4 cut(s)	145, 552, 901, 1545
TaiI	ACGT	2 cut(s)	234, 673
TaqI	TCGA	3 cut(s)	513, 903, 1066
TaqII	GACCGA	1 cut(s)	841
TasI	AATT	5 cut(s)	124, 906, 931, 1291, 1312
TatI	WGTACW	1 cut(s)	1268
TauI	GCSGC	2 cut(s)	266, 290
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	6 cut(s)	128, 402, 471, 894, 930, 1506
Tru9I	TTAA	6 cut(s)	128, 402, 471, 894, 930, 1506
TscAI	CASTG	2 cut(s)	1234, 1573
TseFI	GTSAC	3 cut(s)	145, 563, 1607
Tsp45I	GTSAC	3 cut(s)	145, 563, 1607
TspDTI	ATGAA	2 cut(s)	743, 1079
TspGWI	ACGGA	1 cut(s)	727
TspRI	CASTG	2 cut(s)	1234, 1573
Vha464I	CTTAAG	2 cut(s)	401, 470
VneI	GTGCAC	2 cut(s)	1238, 1362
VpaK11BI	GGWCC	1 cut(s)	1212
XapI	RAATTY	1 cut(s)	124
XbaI	TCTAGA	1 cut(s)	632
XceI	RCATGY	2 cut(s)	179, 481
XmiI	GTMKAC	1 cut(s)	1224
XmnI	GAANNNNTTC	1 cut(s)	868
XspI	CTAG	5 cut(s)	309, 573, 633, 1139, 1605
Zsp2I	ATGCAT	2 cut(s)	630, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.